ARF1
gene geneOn this page
Summary
ARF1 (ARF GTPase 1, HGNC:652) is a protein-coding gene on chromosome 1q42.13, encoding ADP-ribosylation factor 1 (P84077). Small GTPase involved in protein trafficking between different compartments. It is a selective cancer dependency (DepMap: 30.5% of cell lines).
ADP-ribosylation factor 1 (ARF1) is a member of the human ARF gene family. The family members encode small guanine nucleotide-binding proteins that stimulate the ADP-ribosyltransferase activity of cholera toxin and play a role in vesicular trafficking as activators of phospholipase D. The gene products, including 6 ARF proteins and 11 ARF-like proteins, constitute a family of the RAS superfamily. The ARF proteins are categorized as class I (ARF1, ARF2 and ARF3), class II (ARF4 and ARF5) and class III (ARF6), and members of each class share a common gene organization. The ARF1 protein is localized to the Golgi apparatus and has a central role in intra-Golgi transport. Multiple alternatively spliced transcript variants encoding the same protein have been found for this gene.
Source: NCBI Gene 375 — RefSeq curated summary.
At a glance
- Gene–disease (curated): periventricular nodular heterotopia (Definitive, ClinGen) — +1 more curated relationship
- GWAS associations: 2
- Clinical variants (ClinVar): 45 total — 7 pathogenic, 5 likely-pathogenic
- Phenotypes (HPO): 25
- Druggable target: yes
- Cancer dependency (DepMap): dependent in 30.5% of screened cell lines
- MANE Select transcript:
NM_001658
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:652 |
| Approved symbol | ARF1 |
| Name | ARF GTPase 1 |
| Location | 1q42.13 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000143761 |
| Ensembl biotype | protein_coding |
| OMIM | 103180 |
| Entrez | 375 |
Gene structure
Transcript identifiers
Ensembl transcripts: 43 — 42 protein_coding, 1 retained_intron
ENST00000272102, ENST00000469235, ENST00000470558, ENST00000470670, ENST00000473546, ENST00000473949, ENST00000477451, ENST00000478336, ENST00000478424, ENST00000482962, ENST00000490705, ENST00000497165, ENST00000862334, ENST00000862335, ENST00000862336, ENST00000862337, ENST00000862338, ENST00000862339, ENST00000862340, ENST00000862341, ENST00000862342, ENST00000862343, ENST00000862344, ENST00000862345, ENST00000862346, ENST00000862347, ENST00000862348, ENST00000862349, ENST00000862350, ENST00000862351, ENST00000862352, ENST00000862353, ENST00000862354, ENST00000862355, ENST00000926347, ENST00000926348, ENST00000926349, ENST00000926350, ENST00000953456, ENST00000953457, ENST00000953458, ENST00000953459, ENST00000953460
RefSeq mRNA: 4 — MANE Select: NM_001658
NM_001024226, NM_001024227, NM_001024228, NM_001658
CCDS: CCDS1565
Canonical transcript exons
ENST00000272102 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001015362 | 228082708 | 228082765 |
| ENSE00001908017 | 228097852 | 228099212 |
| ENSE00003473670 | 228097078 | 228097262 |
| ENSE00003625230 | 228097591 | 228097715 |
| ENSE00003646335 | 228097342 | 228097452 |
Expression profiles
Bgee: expression breadth ubiquitous, 295 present calls, max score 99.62.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 300.1295 / max 1290.5057, expressed in 1827 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 8908 | 292.5773 | 1827 |
| 8909 | 4.9449 | 1367 |
| 8917 | 1.6616 | 937 |
| 8911 | 0.5651 | 149 |
| 8912 | 0.2887 | 59 |
| 8910 | 0.0338 | 10 |
| 8913 | 0.0297 | 12 |
| 201981 | 0.0284 | 6 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| adult organism | UBERON:0007023 | 99.62 | gold quality |
| ileal mucosa | UBERON:0000331 | 99.57 | gold quality |
| stromal cell of endometrium | CL:0002255 | 99.51 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 99.43 | gold quality |
| type B pancreatic cell | CL:0000169 | 99.36 | gold quality |
| pituitary gland | UBERON:0000007 | 99.35 | gold quality |
| adenohypophysis | UBERON:0002196 | 99.35 | gold quality |
| corpus epididymis | UBERON:0004359 | 99.32 | gold quality |
| right lung | UBERON:0002167 | 99.28 | gold quality |
| upper lobe of lung | UBERON:0008948 | 99.27 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 99.27 | gold quality |
| decidua | UBERON:0002450 | 99.26 | gold quality |
| islet of Langerhans | UBERON:0000006 | 99.24 | gold quality |
| left uterine tube | UBERON:0001303 | 99.24 | gold quality |
| caput epididymis | UBERON:0004358 | 99.24 | gold quality |
| endocervix | UBERON:0000458 | 99.23 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 99.23 | gold quality |
| monocyte | CL:0000576 | 99.22 | gold quality |
| mononuclear cell | CL:0000842 | 99.21 | gold quality |
| colonic mucosa | UBERON:0000317 | 99.21 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 99.21 | gold quality |
| left testis | UBERON:0004533 | 99.21 | gold quality |
| prefrontal cortex | UBERON:0000451 | 99.20 | gold quality |
| ascending aorta | UBERON:0001496 | 99.20 | gold quality |
| thoracic aorta | UBERON:0001515 | 99.20 | gold quality |
| placenta | UBERON:0001987 | 99.20 | gold quality |
| body of uterus | UBERON:0009853 | 99.20 | gold quality |
| leukocyte | CL:0000738 | 99.19 | gold quality |
| body of pancreas | UBERON:0001150 | 99.19 | gold quality |
| right testis | UBERON:0004534 | 99.19 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-122 | yes | 20.91 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): MYC, ZBTB2
miRNA regulators (miRDB)
49 targeting ARF1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3064-3P | 100.00 | 70.09 | 1254 |
| HSA-MIR-4510 | 100.00 | 66.60 | 2050 |
| HSA-MIR-6127 | 100.00 | 66.76 | 2188 |
| HSA-MIR-6129 | 100.00 | 66.46 | 2080 |
| HSA-MIR-6130 | 100.00 | 66.69 | 2012 |
| HSA-MIR-6133 | 100.00 | 66.48 | 2064 |
| HSA-MIR-4776-3P | 100.00 | 68.73 | 1340 |
| HSA-MIR-12121 | 99.99 | 66.64 | 255 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
| HSA-MIR-363-3P | 99.98 | 74.72 | 1821 |
| HSA-MIR-367-3P | 99.98 | 74.83 | 1819 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-4715-3P | 99.98 | 66.03 | 670 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-548J-3P | 99.94 | 72.61 | 4881 |
| HSA-MIR-95-5P | 99.89 | 72.17 | 3973 |
| HSA-MIR-12119 | 99.87 | 68.35 | 1653 |
| HSA-MIR-548D-3P | 99.87 | 70.67 | 4362 |
| HSA-MIR-548BB-3P | 99.86 | 70.58 | 4354 |
| HSA-MIR-576-5P | 99.84 | 70.46 | 2582 |
| HSA-MIR-548AC | 99.84 | 70.77 | 4351 |
| HSA-MIR-548H-3P | 99.84 | 70.80 | 4349 |
| HSA-MIR-548Z | 99.84 | 70.80 | 4349 |
| HSA-MIR-636 | 99.80 | 69.58 | 1500 |
| HSA-MIR-323A-3P | 99.79 | 70.30 | 1739 |
| HSA-MIR-320A-3P | 99.77 | 69.73 | 2107 |
| HSA-MIR-320B | 99.77 | 69.73 | 2107 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 30.5% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 40)
- A senescence rescue screen identifies BCL6 as an inhibitor of anti-proliferative p19(ARF)-p53 signaling (PMID:11914273)
- ARF1 has a role in phospholipase D activation by the M3 muscarinic receptor (PMID:12799371)
- human ARF tumor suppressor binds to Tat-binding protein-1 and has a role in control of cell proliferation (PMID:14665636)
- Overexpression of SPN causes activation of the tumor suppressor protein ARF1. (PMID:14676827)
- crystal structure of the ARF1*GDP*Sec7*Brefeldin A (BFA)complex shows that BFA binds at the protein-protein interface to inhibit conformational changes in ARF1 required for Sec7 to dislodge the GDP molecule (PMID:14690595)
- Results from NMR experiments presented on ADP-ribosylation factor 1 (Arf1).GDP and Delta17Arf1.GDP in solution reveal substantial structural differences that can only be associated with N-terminal truncation. (PMID:15308674)
- GDP-bound ARF1 induces dissociation of ADRP from the Lipid droplet surface;. (PMID:15336557)
- Binding of Arf1 to phosphatidylinositol (4,5) bisphosphate can promote the nucleotide exchange process and facilitate activation of Arfs with associated conformational changes and possible alteration in position and stability of Arf1 N-terminal helix. (PMID:15581351)
- Arf1 mRNA is a natural target for Stau1-mediated decay, and data indicate that other mRNAs are also natural targets. (PMID:15680326)
- These studies suggest that membrin recruits Arf-1 to the early Golgi and reveal distinct kinetic cycles for Arf-1 at early and late Golgi determined by different sets of Arf regulators and effectors. (PMID:15781476)
- The ADP-Ribosylation Factor 1 acts as a master regulator of Golgi structure and function through the recruitment and activation of various downstream effectors. (PMID:15793564)
- CTLA-4 may be stored in a specialized compartment in regulatory T cells that can be triggered rapidly for deployment to the plasma membrane in a phospholipase D- and ADP ribosylation factor-1-dependent manner (PMID:15814706)
- MdmX can affect post-translational modification and stability of Mdm2 and p53 activity through interaction with ARF (PMID:15876864)
- Analysis of the four possible conformations of the human ARF1 N-terminal peptide by molecular dynamics simulations to distinguish which of the four possible membrane bound structures was the most likely. (PMID:16308272)
- N376 to D mutation in the conserved NPxxY motif within the carboxy terminal tail domain (CT) of the 5-HT2A receptor alters the binding preference of GST-fusion protein constructs of the CT domain from ARF1 to an alternative isoform, ARF6. (PMID:16545942)
- A phosphatidylinositol-3-kinase-dependent signal transition defines the sequence of ARF1 activation during phagocytosis. (PMID:16669702)
- Data show that the architecture of the vimentin cytoskeleton is modified by perturbation of the GTPase ARF1. (PMID:16912072)
- Arf1-GTP-ASAP1 undergoes a significant conformational change when transitioning from the ground to catalytically active state (PMID:17112341)
- Coatomer is linked to the Golgi through multiple interfaces with membrane-bound Arf1-GTP. (PMID:17451557)
- Enhanced the stimulatory effect of 1-Phosphatidylinositol 4-Kinase on regulated exocytosis. (PMID:17555535)
- p24A is a regulator of signal-dependent trafficking that controls ARF1-dependent resensitization of PAR-2 (PMID:17693410)
- These results suggest that KIAA1110 is expressed specifically in mature neurons and may play an important role in the secretion pathway as a GEF for ARF1. (PMID:17981261)
- siRNAs demonstrate that GBF1-mediated ARF1 activation is required for efficient MHV RNA replication (PMID:18551169)
- Arf1 and Arf6 were shown to load GTP in a membrane-curvature-dependent manner and stabilize, or further facilitate, changes in membrane curvature through the insertion of an amphipathic helix. (PMID:18597672)
- Arf1-GTP induces positive membrane curvature and find that the small GTPase can dimerize dependent on GTP (PMID:18689681)
- Arf1-GTP-induced tubule formation suggests a function of Arf family proteins in curvature acquisition at sites of vesicle budding. (PMID:18693248)
- ARF1 regulates epidermal growth factor-dependent breast cancer cell growth and invasion during cancer progression by controlling the activation of the phosphatidylinositol 3-kinase pathway (PMID:18990689)
- present the structure of a myristoylated ARF1 protein, determined by solution NMR methods, and an assessment of the influence of myristoylation on association of ARF1.GDP and ARF1.GTP with lipid bilayers (PMID:19141284)
- ARF1 may play a critical role in clathrin-mediated cholera toxin (CT) trafficking through the endoplasmic reticulum and Golgi and ARF6 may facilitate clathrin-mediated CT endocytosis that leads to enhanced Gs(alpha) activation by CT. (PMID:19359423)
- Data suggest a novel model in which ARF1 recruits PKD2 to the TGN by binding to Pro275 in its C1b domain followed by anchoring of PKD2 in the TGN membranes via binding of its C1a domain to diacylglycerol. (PMID:20089835)
- The authors demonstrate that Rab1b-activated GBF1 and ARF1 are involved in Ebolavirus virion formation, suggesting that both the COPII and COPI transport systems play a role in Ebolavirus VP40-mediated particle formation. (PMID:20164217)
- analysis of how modifications to the C-terminus of Arf1 alter cell functions and protein interactions (PMID:20214751)
- Protein complexes containing CYFIP/Sra/PIR121 coordinate Arf1 and Rac1 signalling during clathrin-AP-1-coated carrier biogenesis at the trans-golgi network. (PMID:20228810)
- Data demonstrate a key role of Rab and Arf family small GTPases and intracellular trafficking in mTORC1 activation. (PMID:20457610)
- Vascular endothelial growth factor receptor-2 activates ADP-ribosylation factor 1 to promote endothelial nitric-oxide synthase activation and nitric oxide release from endothelial cells (PMID:20529868)
- Insight into the role of dynamics in the conformational switch of the small GTP-binding protein Arf1. (PMID:20861011)
- Arf1 regulates PLA2G6-A activity together with Arf4; and gene silencing of Arf1 was shown to alter cytosolic coat protein I subunit recruitment to the early secretory pathway. (PMID:20881058)
- These data provide novel insights into the role of Arf1 in the regulation of viral RNA replication and the production of infectious hepatitis C virus. (PMID:21068255)
- Molecular basis of phosphatidylinositol 4-phosphate and ARF1 GTPase recognition by the FAPP1 pleckstrin homology (PH) domain. (PMID:21454700)
- ARF1 controls proliferation of breast cancer cells by regulating the retinoblastoma protein (PMID:21478909)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | arf2a | ENSDARG00000014763 |
| mus_musculus | Arf1 | ENSMUSG00000048076 |
| rattus_norvegicus | ENSRNOG00000063798 | |
| drosophila_melanogaster | Arf1 | FBGN0010348 |
| caenorhabditis_elegans | WBGENE00000182 |
Paralogs (30): ARF5 (ENSG00000004059), SAR1A (ENSG00000079332), ARFRP1 (ENSG00000101246), TRIM23 (ENSG00000113595), ARL6 (ENSG00000113966), ARL1 (ENSG00000120805), ARL4A (ENSG00000122644), ARL8B (ENSG00000134108), ARF3 (ENSG00000134287), ARL3 (ENSG00000138175), ARL5C (ENSG00000141748), ARL8A (ENSG00000143862), ARL11 (ENSG00000152213), SAR1B (ENSG00000152700), ARL5A (ENSG00000162980), ARF6 (ENSG00000165527), ARL5B (ENSG00000165997), ARF4 (ENSG00000168374), ARL13B (ENSG00000169379), ARL13A (ENSG00000174225), ARL10 (ENSG00000175414), ARL4D (ENSG00000175906), ARL14 (ENSG00000179674), ARL15 (ENSG00000185305), ARL17A (ENSG00000185829), ARL4C (ENSG00000188042), ARL9 (ENSG00000196503), ARL2 (ENSG00000213465), ARL16 (ENSG00000214087), ARL17B (ENSG00000228696)
Protein
Protein identifiers
ADP-ribosylation factor 1 — P84077 (reviewed: P84077)
All UniProt accessions (8): P84077, A0A8V8TNZ0, A0A8V8TNZ5, A0A8V8TP92, A0A8V8TP99, A0A8V8TPG9, A0A8V8TQC0, A0A8V8TQP8
UniProt curated annotations — full annotation on UniProt →
Function. Small GTPase involved in protein trafficking between different compartments. Modulates vesicle budding and uncoating within the Golgi complex. In its GTP-bound form, triggers the recruitment of coatomer proteins to the Golgi membrane. The hydrolysis of ARF1-bound GTP, which is mediated by ARFGAPs proteins, is required for dissociation of coat proteins from Golgi membranes and vesicles. The GTP-bound form interacts with PICK1 to limit PICK1-mediated inhibition of Arp2/3 complex activity; the function is linked to AMPA receptor (AMPAR) trafficking, regulation of synaptic plasticity of excitatory synapses and spine shrinkage during long-term depression (LTD). Plays a key role in the regulation of intestinal stem cells and gut microbiota, and is essential for maintaining intestinal homeostasis. Also plays a critical role in mast cell expansion but not in mast cell maturation by facilitating optimal mTORC1 activation. (Microbial infection) Functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase.
Subunit / interactions. Interacts (when activated) with GGA1, GGA2 and GGA3; the interaction is required for proper subcellular location of GGA1, GGA2 and GGA3. Interacts with ARHGAP21, ASAP2, HERC1, PRKCABP, PIP5K1B, TMED2, PSCD2, TMED10 and GRIA2. Interacts with ARFGAP1, which hydrolyzes GTP and thus, regulates its function. Interacts with PI4KB in the Golgi complex. Interacts with NCS1/FREQ in the Golgi and at the plasma membrane. Interacts with PLEKHA3. Interacts with PLEKHA8; the interaction, together with phosphatidylinositol 4-phosphate binding, is required for FAPP2-mediated glucosylceramide transfer activity. Interacts (activated) with PICK1 (via PDZ domain); the interaction blocks Arp2/3 complex inhibition. Interacts with IQSEC1. Interacts with C9orf72.
Subcellular location. Golgi apparatus membrane. Synapse. Synaptosome. Postsynaptic density.
Post-translational modifications. (Microbial infection) Demyristoylated by S.flexneri cysteine protease IpaJ which cleaves the peptide bond between N-myristoylated Gly-2 and Asn-3.
Disease relevance. Periventricular nodular heterotopia 8 (PVNH8) [MIM:618185] A form of periventricular nodular heterotopia, a disorder resulting from a defect in the pattern of neuronal migration in which ectopic collections of neurons lie along the lateral ventricles of the brain or just beneath, contiguously or in isolated patches. PVNH8 is an autosomal dominant disease characterized by developmental disabilities, speech delay, seizures and attention deficit-hyperactivity disorder. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Alternates between an inactive GDP-bound form and an active GTP-bound form. Intrinsic GTPase activity is almost undetectable in vitro. Activated by guanine nucleotide-exchange factors (GEFs) and inactivated by GTPase-activating proteins (GAPs).
Similarity. Belongs to the small GTPase superfamily. Arf family.
RefSeq proteins (4): NP_001019397, NP_001019398, NP_001019399, NP_001649* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR005225 | Small_GTP-bd | Domain |
| IPR006689 | Small_GTPase_ARF/SAR | Family |
| IPR024156 | Small_GTPase_ARF | Family |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR045872 | Arf1-5-like | Family |
Pfam: PF00025
Catalyzed reactions (Rhea), 1 shown:
- GTP + H2O = GDP + phosphate + H(+) (RHEA:19669)
UniProt features (32 total): strand 9, helix 8, sequence variant 3, turn 3, binding site 3, initiator methionine 1, chain 1, mutagenesis site 1, region of interest 1, modified residue 1, lipid moiety-binding region 1
Structure
Experimental structures (PDB)
40 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8SDW | X-RAY DIFFRACTION | 1.75 |
| 1HUR | X-RAY DIFFRACTION | 2 |
| 7R4H | ELECTRON MICROSCOPY | 2.34 |
| 6FAE | X-RAY DIFFRACTION | 2.35 |
| 1RE0 | X-RAY DIFFRACTION | 2.4 |
| 9QLO | ELECTRON MICROSCOPY | 2.47 |
| 9QLQ | ELECTRON MICROSCOPY | 2.57 |
| 7DN8 | X-RAY DIFFRACTION | 2.61 |
| 9QLP | ELECTRON MICROSCOPY | 2.75 |
| 3O47 | X-RAY DIFFRACTION | 2.8 |
| 7DN9 | X-RAY DIFFRACTION | 3.29 |
| 6CM9 | ELECTRON MICROSCOPY | 3.73 |
| 6DFF | ELECTRON MICROSCOPY | 3.9 |
| 7MGE | ELECTRON MICROSCOPY | 3.94 |
| 9C5A | ELECTRON MICROSCOPY | 4.2 |
| 6D83 | ELECTRON MICROSCOPY | 4.27 |
| 9C59 | ELECTRON MICROSCOPY | 4.3 |
| 9C5B | ELECTRON MICROSCOPY | 4.5 |
| 9C58 | ELECTRON MICROSCOPY | 4.7 |
| 9U9R | ELECTRON MICROSCOPY | 6.6 |
| 6D84 | ELECTRON MICROSCOPY | 6.72 |
| 6CRI | ELECTRON MICROSCOPY | 6.8 |
| 9U9S | ELECTRON MICROSCOPY | 6.8 |
| 4HMY | X-RAY DIFFRACTION | 7 |
| 9RTW | ELECTRON MICROSCOPY | 7.4 |
| 9QPQ | ELECTRON MICROSCOPY | 7.5 |
| 9RTX | ELECTRON MICROSCOPY | 8.5 |
| 9RTY | ELECTRON MICROSCOPY | 8.9 |
| 8D4E | ELECTRON MICROSCOPY | 9.2 |
| 8D4C | ELECTRON MICROSCOPY | 9.3 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P84077-F1 | 85.93 | 0.57 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (3): 24–32; 126–129; 160
Post-translational modifications (2): 2, 2
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 71 | inhibits gtp hydrolysis. coatomer proteins recruitment to the golgi membrane and formation of coated vesicles are normal |
Function
Pathways and Gene Ontology
Reactome pathways
39 pathways
| ID | Pathway |
|---|---|
| R-HSA-1660499 | Synthesis of PIPs at the plasma membrane |
| R-HSA-1660514 | Synthesis of PIPs at the Golgi membrane |
| R-HSA-167590 | Nef Mediated CD4 Down-regulation |
| R-HSA-199992 | trans-Golgi Network Vesicle Budding |
| R-HSA-2132295 | MHC class II antigen presentation |
| R-HSA-432720 | Lysosome Vesicle Biogenesis |
| R-HSA-432722 | Golgi Associated Vesicle Biogenesis |
| R-HSA-6807878 | COPI-mediated anterograde transport |
| R-HSA-6811434 | COPI-dependent Golgi-to-ER retrograde traffic |
| R-HSA-6811438 | Intra-Golgi traffic |
| R-HSA-8950505 | Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation |
| R-HSA-9845576 | Glycosphingolipid transport |
| R-HSA-1280215 | Cytokine Signaling in Immune system |
| R-HSA-1280218 | Adaptive Immune System |
| R-HSA-1430728 | Metabolism |
| R-HSA-1483255 | PI Metabolism |
| R-HSA-1483257 | Phospholipid metabolism |
| R-HSA-162906 | HIV Infection |
| R-HSA-162909 | Host Interactions of HIV factors |
| R-HSA-1643685 | Disease |
| R-HSA-164938 | Nef-mediates down modulation of cell surface receptors by recruiting them to clathrin adapters |
| R-HSA-164952 | The role of Nef in HIV-1 replication and disease pathogenesis |
| R-HSA-168256 | Immune System |
| R-HSA-199977 | ER to Golgi Anterograde Transport |
| R-HSA-199991 | Membrane Trafficking |
| R-HSA-382551 | Transport of small molecules |
| R-HSA-392499 | Metabolism of proteins |
| R-HSA-446203 | Asparagine N-linked glycosylation |
| R-HSA-447115 | Interleukin-12 family signaling |
| R-HSA-449147 | Signaling by Interleukins |
MSigDB gene sets: 358 (showing top):
GOBP_MITOTIC_CYTOKINESIS, GOBP_CELLULAR_RESPONSE_TO_VIRUS, REACTOME_ADAPTIVE_IMMUNE_SYSTEM, GOBP_INTRACELLULAR_PROTEIN_TRANSPORT, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOBP_REGULATION_OF_ACTIN_NUCLEATION, HSIAO_HOUSEKEEPING_GENES, KYNG_DNA_DAMAGE_DN, REACTOME_THE_ROLE_OF_NEF_IN_HIV_1_REPLICATION_AND_DISEASE_PATHOGENESIS, GOBP_VESICLE_MEDIATED_TRANSPORT, REACTOME_MEMBRANE_TRAFFICKING, CACCAGC_MIR138, CTATGCA_MIR153, GOBP_CYTOKINETIC_PROCESS, YY1_Q6
GO Biological Process (10): regulation of receptor internalization (GO:0002090), intracellular copper ion homeostasis (GO:0006878), intracellular protein transport (GO:0006886), vesicle-mediated transport (GO:0016192), regulation of Arp2/3 complex-mediated actin nucleation (GO:0034315), long-term synaptic depression (GO:0060292), dendritic spine organization (GO:0097061), cellular response to virus (GO:0098586), mitotic cleavage furrow ingression (GO:1990386), protein transport (GO:0015031)
GO Molecular Function (9): magnesium ion binding (GO:0000287), RNA binding (GO:0003723), GTPase activity (GO:0003924), G protein activity (GO:0003925), GTP binding (GO:0005525), protein domain specific binding (GO:0019904), nucleotide binding (GO:0000166), protein binding (GO:0005515), hydrolase activity (GO:0016787)
GO Cellular Component (15): Golgi membrane (GO:0000139), cytoplasm (GO:0005737), cytosol (GO:0005829), plasma membrane (GO:0005886), focal adhesion (GO:0005925), postsynaptic density (GO:0014069), sarcomere (GO:0030017), cell leading edge (GO:0031252), protein-containing complex (GO:0032991), neuron projection (GO:0043005), extracellular exosome (GO:0070062), Golgi apparatus (GO:0005794), endomembrane system (GO:0012505), membrane (GO:0016020), synapse (GO:0045202)
Reactome top-level categories
Rollup of top-15 pathways:
| Category | Pathways |
|---|---|
| PI Metabolism | 2 |
| trans-Golgi Network Vesicle Budding | 2 |
| Immune System | 2 |
| Nef-mediates down modulation of cell surface receptors by recruiting them to clathrin adapters | 1 |
| Membrane Trafficking | 1 |
| Adaptive Immune System | 1 |
| ER to Golgi Anterograde Transport | 1 |
| Golgi-to-ER retrograde transport | 1 |
| Intra-Golgi and retrograde Golgi-to-ER traffic | 1 |
| Interleukin-12 signaling | 1 |
| Transport of small molecules | 1 |
| Phospholipid metabolism | 1 |
| Metabolism of lipids | 1 |
| Viral Infection Pathways | 1 |
| HIV Infection | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 6 |
| intracellular protein localization | 2 |
| transport | 2 |
| cytoplasm | 2 |
| receptor internalization | 1 |
| regulation of receptor-mediated endocytosis | 1 |
| intracellular monoatomic cation homeostasis | 1 |
| copper ion homeostasis | 1 |
| protein transport | 1 |
| intracellular transport | 1 |
| cellular process | 1 |
| Arp2/3 complex-mediated actin nucleation | 1 |
| regulation of actin nucleation | 1 |
| regulation of synaptic plasticity | 1 |
| negative regulation of synaptic transmission | 1 |
| postsynapse organization | 1 |
| neuron projection organization | 1 |
| response to virus | 1 |
| cleavage furrow ingression | 1 |
| mitotic cytokinetic process | 1 |
| establishment of protein localization | 1 |
| metal ion binding | 1 |
| nucleic acid binding | 1 |
| ribonucleoside triphosphate phosphatase activity | 1 |
| GTPase activity | 1 |
| molecular function regulator activity | 1 |
| guanyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| protein binding | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| binding | 1 |
| catalytic activity | 1 |
| Golgi apparatus | 1 |
| bounding membrane of organelle | 1 |
| intracellular anatomical structure | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cell-substrate junction | 1 |
| asymmetric synapse | 1 |
Protein interactions and networks
STRING
0 interactions, top by confidence (×1000):
IntAct
127 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| AP1B1 | Ap1g1 | psi-mi:“MI:0915”(physical association) | 0.740 |
| LYRM2 | NDUFAB1 | psi-mi:“MI:0914”(association) | 0.730 |
| ARF1 | CYTH2 | psi-mi:“MI:0407”(direct interaction) | 0.720 |
| CYTH2 | ARF1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| LRIF1 | SMCHD1 | psi-mi:“MI:0914”(association) | 0.680 |
| Ap1g1 | Ap1m1 | psi-mi:“MI:0914”(association) | 0.660 |
| LYRM7 | NDUFAB1 | psi-mi:“MI:0914”(association) | 0.640 |
| ARF1 | ARFIP2 | psi-mi:“MI:0915”(physical association) | 0.620 |
| ARF1 | ARFIP2 | psi-mi:“MI:0914”(association) | 0.620 |
| RAB8A | WDR91 | psi-mi:“MI:0914”(association) | 0.600 |
| ARF5 | ARF4 | psi-mi:“MI:0914”(association) | 0.530 |
| VCAM1 | PSMD11 | psi-mi:“MI:0914”(association) | 0.530 |
| ARF1 | ARFIP1 | psi-mi:“MI:0915”(physical association) | 0.520 |
| ARFIP1 | ARF1 | psi-mi:“MI:0915”(physical association) | 0.520 |
| SNAP25 | ARF1 | psi-mi:“MI:0914”(association) | 0.510 |
| ARF1 | SNAP25 | psi-mi:“MI:0914”(association) | 0.510 |
| SNAP25 | ARF1 | psi-mi:“MI:0403”(colocalization) | 0.510 |
| NRAS | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.480 |
| AP3D1 | psi-mi:“MI:0914”(association) | 0.460 | |
| MYL12B | psi-mi:“MI:0914”(association) | 0.460 |
BioGRID (358): ARF1 (Affinity Capture-MS), ARF1 (Reconstituted Complex), ARF1 (Reconstituted Complex), ARF1 (Reconstituted Complex), ARF1 (Affinity Capture-MS), ARF1 (Affinity Capture-RNA), ACADM (Co-fractionation), AHSA1 (Co-fractionation), ARF1 (Co-fractionation), ARF1 (Co-fractionation), ARF4 (Co-fractionation), ARF5 (Co-fractionation), ARFGAP1 (Co-fractionation), ARFGAP2 (Co-fractionation), ARFGAP3 (Co-fractionation)
ESM2 similar proteins: O00909, O23778, O48649, O48920, P0CM16, P0CM17, P0DH91, P11076, P18085, P19146, P22274, P36397, P36579, P49076, P49702, P51643, P51644, P51821, P51822, P51823, P61204, P61205, P61206, P61207, P61750, P61751, P84077, P84078, P84079, P84080, P84081, P84082, P84083, P84084, P84085, P91924, Q06396, Q10943, Q25761, Q3SZF2
Diamond homologs: A1CRG9, A1D4D1, A3LTA2, A5DR82, A5E5G3, A8ISN6, O04266, O04267, O04834, O45379, O48649, O48920, P0C583, P0C950, P0C951, P0CM16, P0CM17, P0CR30, P0CR31, P0CT16, P0CT17, P0DH91, P11076, P18085, P19146, P20606, P22274, P34727, P36397, P36536, P36579, P38116, P40940, P40945, P40994, P49702, P51643, P51821, P51823, P51824
SIGNOR signaling
6 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| ARFGEF1 | “up-regulates activity” | ARF1 | “guanine nucleotide exchange factor” |
| ARF1 | “up-regulates quantity” | “AP-4 Adaptor complex” | binding |
| ARFGAP1 | “up-regulates activity” | ARF1 | “gtpase-activating protein” |
| ASAP2 | “up-regulates activity” | ARF1 | “gtpase-activating protein” |
| ARF1 | up-regulates | Vesicle_transport | |
| GBF1 | “up-regulates activity” | ARF1 | “guanine nucleotide exchange factor” |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 125 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Regulation of RAS by GAPs | 6 | 13.7× | 3e-03 |
| Mitochondrial protein import | 6 | 11.8× | 3e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| intracellular protein transport | 11 | 7.2× | 3e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
45 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 7 |
| Likely pathogenic | 5 |
| Uncertain significance | 18 |
| Likely benign | 5 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (12)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1343798 | NM_001658.4(ARF1):c.153C>A (p.Phe51Leu) | Pathogenic |
| 1343799 | NM_001658.4(ARF1):c.392C>G (p.Pro131Arg) | Pathogenic |
| 1343803 | NM_001658.4(ARF1):c.151T>C (p.Phe51Leu) | Pathogenic |
| 3247647 | NC_000001.10:g.(?228194830)(228566496_?)del | Pathogenic |
| 3253556 | NM_001658.4(ARF1):c.202G>A (p.Val68Met) | Pathogenic |
| 590332 | NM_001658.4(ARF1):c.103T>C (p.Tyr35His) | Pathogenic |
| 590333 | NM_001658.4(ARF1):c.379A>G (p.Lys127Glu) | Pathogenic |
| 1343801 | NM_001658.4(ARF1):c.55C>T (p.Arg19Cys) | Likely pathogenic |
| 1343805 | NM_001658.4(ARF1):c.295C>T (p.Arg99Cys) | Likely pathogenic |
| 3420237 | NM_001658.4(ARF1):c.208G>A (p.Gly70Ser) | Likely pathogenic |
| 565231 | GRCh37/hg19 1q42.13(chr1:227696109-229152386)x3 | Likely pathogenic |
| 690284 | NM_001658.4(ARF1):c.143C>T (p.Thr48Ile) | Likely pathogenic |
SpliceAI
652 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:228082762:TGAGG:T | donor_loss | 1.0000 |
| 1:228082763:GAGGT:G | donor_loss | 1.0000 |
| 1:228082764:AGG:A | donor_loss | 1.0000 |
| 1:228082766:GTGA:G | donor_loss | 1.0000 |
| 1:228082767:T:G | donor_loss | 1.0000 |
| 1:228097074:CCAG:C | acceptor_loss | 1.0000 |
| 1:228097075:CAG:C | acceptor_loss | 1.0000 |
| 1:228097077:GGT:G | acceptor_gain | 1.0000 |
| 1:228097201:G:T | donor_gain | 1.0000 |
| 1:228097228:GCTGG:G | donor_gain | 1.0000 |
| 1:228097229:C:G | donor_gain | 1.0000 |
| 1:228097333:C:CA | acceptor_gain | 1.0000 |
| 1:228097336:A:AG | acceptor_gain | 1.0000 |
| 1:228097337:C:G | acceptor_gain | 1.0000 |
| 1:228097338:CCAG:C | acceptor_loss | 1.0000 |
| 1:228097339:CAGG:C | acceptor_loss | 1.0000 |
| 1:228097340:A:AG | acceptor_gain | 1.0000 |
| 1:228097340:AG:A | acceptor_gain | 1.0000 |
| 1:228097341:G:GT | acceptor_gain | 1.0000 |
| 1:228097341:GG:G | acceptor_gain | 1.0000 |
| 1:228097341:GGC:G | acceptor_gain | 1.0000 |
| 1:228097341:GGCT:G | acceptor_gain | 1.0000 |
| 1:228097341:GGCTT:G | acceptor_gain | 1.0000 |
| 1:228097448:ACAAG:A | donor_gain | 1.0000 |
| 1:228097449:CAAG:C | donor_gain | 1.0000 |
| 1:228097449:CAAGG:C | donor_loss | 1.0000 |
| 1:228097450:AAG:A | donor_gain | 1.0000 |
| 1:228097450:AAGGT:A | donor_loss | 1.0000 |
| 1:228097451:AG:A | donor_gain | 1.0000 |
| 1:228097451:AGGT:A | donor_loss | 1.0000 |
AlphaMissense
1202 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:228097176:T:A | L21H | 1.000 |
| 1:228097179:T:G | M22R | 1.000 |
| 1:228097184:G:C | G24R | 1.000 |
| 1:228097184:G:T | G24C | 1.000 |
| 1:228097185:G:A | G24D | 1.000 |
| 1:228097185:G:T | G24V | 1.000 |
| 1:228097190:G:C | D26H | 1.000 |
| 1:228097191:A:T | D26V | 1.000 |
| 1:228097193:G:C | A27P | 1.000 |
| 1:228097199:G:A | G29R | 1.000 |
| 1:228097199:G:C | G29R | 1.000 |
| 1:228097199:G:T | G29W | 1.000 |
| 1:228097200:G:A | G29E | 1.000 |
| 1:228097200:G:T | G29V | 1.000 |
| 1:228097202:A:C | K30Q | 1.000 |
| 1:228097203:A:T | K30M | 1.000 |
| 1:228097204:G:C | K30N | 1.000 |
| 1:228097204:G:T | K30N | 1.000 |
| 1:228097206:C:T | T31I | 1.000 |
| 1:228097215:T:A | L34H | 1.000 |
| 1:228097215:T:C | L34P | 1.000 |
| 1:228097224:T:C | L37P | 1.000 |
| 1:228097251:T:A | I46N | 1.000 |
| 1:228097254:C:A | P47H | 1.000 |
| 1:228097257:C:T | T48I | 1.000 |
| 1:228097260:T:A | I49K | 1.000 |
| 1:228097262:G:C | G50R | 1.000 |
| 1:228097262:G:T | G50C | 1.000 |
| 1:228097342:G:A | G50D | 1.000 |
| 1:228097342:G:T | G50V | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000058274 (1:228095281 T>G), RS1000405693 (1:228087207 G>A), RS1000671194 (1:228097498 A>C,G), RS1000928049 (1:228083818 C>G,T), RS1001000239 (1:228084113 C>A), RS1001279337 (1:228089774 G>A,T), RS1001336255 (1:228095029 G>C), RS1001471519 (1:228095161 C>A), RS1001965314 (1:228080827 T>C), RS1002027266 (1:228085682 A>G), RS1002081202 (1:228085970 C>T), RS1002215324 (1:228089061 A>G), RS1002329854 (1:228089415 G>A,T), RS1002341935 (1:228096040 C>T), RS1002657090 (1:228083363 G>T)
Disease associations
OMIM: gene MIM:103180 | disease phenotypes: MIM:618185, MIM:615330, MIM:616451, MIM:118220
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| periventricular nodular heterotopia | Definitive | Autosomal dominant |
| periventricular nodular heterotopia 8 | Strong | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| periventricular nodular heterotopia | Definitive | AD |
Mondo (5): periventricular nodular heterotopia 8 (MONDO:0032588), multiple mitochondrial dysfunctions syndrome 3 (MONDO:0014132), hereditary spastic paraplegia 74 (MONDO:0014644), Charcot-Marie-Tooth disease (MONDO:0015626), periventricular nodular heterotopia (MONDO:0020341)
Orphanet (3): Multiple mitochondrial dysfunctions syndrome type 3 (Orphanet:363424), Autosomal recessive spastic paraplegia type 74 (Orphanet:468661), Charcot-Marie-Tooth disease/Hereditary motor and sensory neuropathy (Orphanet:166)
HPO phenotypes
25 total (25 of 25 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000750 | Delayed speech and language development |
| HP:0000963 | Thin skin |
| HP:0001250 | Seizure |
| HP:0001257 | Spasticity |
| HP:0001263 | Global developmental delay |
| HP:0001382 | Joint hypermobility |
| HP:0001643 | Patent ductus arteriosus |
| HP:0001654 | Abnormal heart valve morphology |
| HP:0001659 | Aortic regurgitation |
| HP:0001892 | Abnormal bleeding |
| HP:0002020 | Gastroesophageal reflux |
| HP:0002021 | Pyloric stenosis |
| HP:0002188 | Delayed CNS myelination |
| HP:0002650 | Scoliosis |
| HP:0002999 | Patellar dislocation |
| HP:0003834 | Shoulder dislocation |
| HP:0004942 | Aortic aneurysm |
| HP:0006855 | Cerebellar vermis atrophy |
| HP:0007165 | Periventricular heterotopia |
| HP:0007359 | Focal-onset seizure |
| HP:0012639 | Abnormal nervous system morphology |
| HP:0032388 | Periventricular nodular heterotopia |
| HP:0034295 | Reduced cerebral white matter volume |
| HP:0100790 | Hernia |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST008788_4 | Adolescent idiopathic scoliosis | 7.000000e-11 |
| GCST008789_3 | Adolescent idiopathic scoliosis | 2.000000e-10 |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002607 | Charcot-Marie-Tooth Disease | C10.500.300.200; C10.574.500.495.200; C10.668.829.800.300.200; C16.131.666.300.200; C16.320.400.375.200 |
| D054091 | Periventricular Nodular Heterotopia | C10.500.507.450.750; C16.131.666.507.450.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5985 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs11541557 | ARF1 | 0.00 | 0 |
ChEMBL bioactivities
1 potent at pChembl≥5 of 1 total, top 1 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.21 | Kd | 620 | nM | CHEMBL259181 |
PubChem BioAssay actives
1 with measured affinity, of 4 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (2S)-2-[[2-(2,3-dihydro-1H-inden-5-yloxy)-9-[(4-phenylphenyl)methyl]purin-6-yl]amino]-3-phenylpropan-1-ol | 318398: Binding affinity to ADP-ribosylation factor 1 expressed HEK293 cells by surface plasmon resonance analysis | kd | 0.6200 | uM |
CTD chemical–gene interactions
53 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression | 3 |
| sodium arsenite | affects binding, increases reaction, increases expression | 2 |
| Arsenic | affects methylation, decreases expression, increases abundance | 2 |
| Copper | increases abundance, decreases abundance, decreases uptake, affects binding, increases expression (+2 more) | 2 |
| Cyclosporine | increases expression | 2 |
| p-Chloromercuribenzoic Acid | affects cotreatment, increases expression | 2 |
| Particulate Matter | affects cotreatment, increases abundance, increases expression, decreases expression | 2 |
| bisphenol F | affects cotreatment, decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | affects expression | 1 |
| sodium arsenate | decreases expression, increases abundance | 1 |
| trichostatin A | increases expression | 1 |
| ochratoxin A | affects binding | 1 |
| ochratoxin B | affects binding | 1 |
| CD 437 | decreases expression | 1 |
| K 7174 | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| 3-(4’-hydroxy-3’-adamantylbiphenyl-4-yl)acrylic acid | decreases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| LM11 compound | decreases activity | 1 |
| NSC 689534 | affects binding, increases expression | 1 |
| Erlotinib Hydrochloride | decreases response to substance | 1 |
| Irinotecan | affects cotreatment, affects response to substance, decreases expression | 1 |
| Temozolomide | affects response to substance | 1 |
| Arsenic Trioxide | increases expression | 1 |
| Gemcitabine | decreases expression | 1 |
| Ethanol | affects cotreatment, increases abundance, increases expression | 1 |
| Benzo(a)pyrene | decreases methylation | 1 |
| Cadmium | increases expression | 1 |
| Carmustine | affects response to substance | 1 |
ChEMBL screening assays
4 unique, capped per target: 4 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5118449 | Binding | Binding affinity to Arf1 in human HepG2 cell lysate assessed as change in denaturation temperature at 25 uM measured after 3 mins by CETSA | New brefeldin A-cinnamic acid ester derivatives as potential antitumor agents: Design, synthesis and biological evaluation. — Eur J Med Chem |
Cellosaurus cell lines
3 cell lines: 3 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1JV | Abcam HeLa ARF1 KO | Cancer cell line | Female |
| CVCL_SD25 | HAP1 ARF1 (-) 1 | Cancer cell line | Male |
| CVCL_SD26 | HAP1 ARF1 (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
60 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04762758 | PHASE3 | UNKNOWN | Phase III Trial Assessing the Efficacy and Safety of PXT3003 in CMT1A Patients |
| NCT00271635 | PHASE2 | COMPLETED | Ascorbic Acid Treatment in CMT1A Trial (AATIC) |
| NCT01401257 | PHASE2 | COMPLETED | Phase II, Randomized, Placebo-controlled Trial in Patients With Charcot-marie-tooth Disease Type 1A |
| NCT02561702 | PHASE2 | COMPLETED | Mexiletine for Muscle Cramps in Charcot Marie Tooth Disease |
| NCT02967679 | PHASE2 | COMPLETED | SERENDEM : MD1003 in Patients Suffering From Demyelinating Neuropathies, an Open Label Pilot Study |
| NCT03124459 | PHASE2 | TERMINATED | Study of ACE-083 in Patients With Charcot-Marie-Tooth Disease |
| NCT03254199 | PHASE2 | TERMINATED | A Study to Assess the Safety and Effectiveness of FLX-787 in Subjects With Charcot-Marie-Tooth Disease Experiencing Muscle Cramps. |
| NCT03943290 | PHASE2 | TERMINATED | Extension Study to Evaluate the Long-Term Effects of ACE-083 in Patients With Facioscapulohumeral Muscular Dystrophy (FSHD) and Charcot-Marie Tooth (CMT) Disease Types 1 and X (CMT1 and CMTX) |
| NCT05777226 | PHASE2 | UNKNOWN | Research of SORD-CMT Natural History and Epalrestat Treatment |
| NCT06482437 | PHASE2 | COMPLETED | Safety and Efficacy of NMD670 in Adult Patients With Type 1 and Type 2 Charcot-Marie-Tooth Disease |
| NCT05696912 | Not specified | UNKNOWN | Functional Tests to Resolve Unsolved Rare Diseases. Rares. |
| NCT01289704 | PHASE2/PHASE3 | UNKNOWN | Treadmill, Stretching and Proprioceptive Exercise (TreSPE) Rehabilitation Program for Charcot-Marie-Tooth Neuropathy Type 1A (CMT1A) |
| NCT00541164 | PHASE1/PHASE2 | COMPLETED | Effects of Coenzyme Q10 on Charcot-Marie-Tooth Disease |
| NCT05361031 | PHASE1/PHASE2 | COMPLETED | The Safety and Tolerability of Engensis (VM202) in Patients With Charcot-Marie-Tooth Disease Subtype 1A (CMT1A) |
| NCT07223632 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Treatment of Charcot-Marie-Tooth Disease, Axonal, Type 2S (CMT2S) in an Individual Patient |
| NCT00149045 | Not specified | COMPLETED | Follow up and Observation of Charcot Marie Tooth Disease in Families |
| NCT01193075 | Not specified | RECRUITING | Natural History Evaluation of Charcot Marie Tooth Disease (CMT) Types CMT1B, CMT2A, CMT4A, CMT4C, and Others |
| NCT01203085 | Not specified | COMPLETED | Development of Charcot Marie Tooth Disease (CMT) Pediatric Scale for Children With CMT |
| NCT01455623 | Not specified | COMPLETED | Development and Validation of a Disability Severity Index for CMT |
| NCT01918826 | Not specified | UNKNOWN | Evaluation of the Analgesic Efficiency of the Transcutaneous Neurostimulation in the Charcot Syndrome Marie Tooth on the Pains of Lower Limbs |
| NCT02001038 | Not specified | COMPLETED | Survey of Current Management of Orthopaedic Complications in CMT Patients |
| NCT02011204 | Not specified | COMPLETED | Study of Electrical Impedance Myography (EIM) in ALS |
| NCT02194010 | Not specified | COMPLETED | Disability Severity Scale (DSI) and Hereditary Motor and Sensory Neuropathy Overall Disability Scale (HMSN-R-ODS) |
| NCT02429947 | Not specified | COMPLETED | An Analysis of the Symptomatic Domains Most Relevant to Charcot Marie Tooth Neuropathy (CMT) Patients |
| NCT02532244 | Not specified | COMPLETED | Genetics of Pediatric-Onset Motor Neuron and Neuromuscular Diseases |
| NCT02699190 | Not specified | COMPLETED | LeukoSEQ: Whole Genome Sequencing as a First-Line Diagnostic Tool for Leukodystrophies |
| NCT02788734 | Not specified | COMPLETED | Patient Reported Outcomes Measures (PROM) in Carpal Tunnel Therapies in Patients With Inherited Neuropathies |
| NCT02979145 | Not specified | UNKNOWN | Charcot-Marie-Tooth Disease (CMT) Infant Scale (INC-6611) |
| NCT03047369 | Not specified | RECRUITING | The Myelin Disorders Biorepository Project |
| NCT03460951 | Not specified | COMPLETED | Diffusion Tensor Imaging in Chronic Inflammatory Demyelinating Polyneuropathy (PIDC) |
| NCT03715283 | Not specified | COMPLETED | Change in MUNIX in Patients With CMT1A Undergoing a Home Ankle Strengthening Program Versus Standard of Care |
| NCT03782883 | Not specified | COMPLETED | The Impact of Charcot-Marie-Tooth Disease in the Real World |
| NCT03810508 | Not specified | TERMINATED | A Natural History Study of Charcot-Marie-Tooth 4J (CMT4J) |
| NCT03966287 | Not specified | COMPLETED | Analysis of Pain and Quality of Life in Patients With Charcot-Marie-Tooth Neuropathy (CMT) |
| NCT04010188 | Not specified | RECRUITING | A Registered Cohort Study on Charcot-Marie-Tooth Disease |
| NCT04283175 | Not specified | COMPLETED | Validation Study of Posturology Platforms for Evaluating Postural Control of Hemiparetic and Neuro-muscular Patients |
| NCT04461613 | Not specified | UNKNOWN | Physical Activity in Persons With Charcot-Marie-Tooth: Developing a Measurement Instrument |
| NCT04786522 | Not specified | COMPLETED | Irisin Levels in Patients With Charcot-Marie-Tooth (CMT) Disease |
| NCT04967716 | Not specified | UNKNOWN | Genetics of Charcot-Marie-Tooth Dystrophy and Related Diseases |
| NCT04980807 | Not specified | COMPLETED | Observational Study of Neuromuscular Function in CMT Type 1&2 and Healthy Controls |
Related Atlas pages
- Associated diseases: periventricular nodular heterotopia 8, periventricular nodular heterotopia
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): adolescent idiopathic scoliosis, hereditary spastic paraplegia 74, multiple mitochondrial dysfunctions syndrome 3, periventricular nodular heterotopia, periventricular nodular heterotopia 8