ARHGAP29-AS1

Summary

ARHGAP29-AS1 (ARHGAP29 antisense RNA 1, HGNC:54311) is a long non-coding RNA gene on chromosome 1p22.1-p21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54311
Approved symbol	ARHGAP29-AS1
Name	ARHGAP29 antisense RNA 1
Location	1p22.1-p21.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000226835
Ensembl biotype	lncRNA
Entrez	107985092
RNAcentral	URS0000EEDBF8 — lncRNA, 1603 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 32 — 32 lncRNA

ENST00000413103, ENST00000418242, ENST00000654057, ENST00000654754, ENST00000656153, ENST00000657152, ENST00000660441, ENST00000660527, ENST00000662164, ENST00000665417, ENST00000666276, ENST00000835309, ENST00000835310, ENST00000835311, ENST00000835312, ENST00000835313, ENST00000835314, ENST00000835315, ENST00000835316, ENST00000835317, ENST00000835318, ENST00000835319, ENST00000835320, ENST00000835321, ENST00000835322, ENST00000835323, ENST00000835324, ENST00000835325, ENST00000835326, ENST00000835327, ENST00000835328, ENST00000835329

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000413103 — 5 exons

Exon	Start	End
ENSE00001609430	94333309	94333409
ENSE00001655805	94334512	94334848
ENSE00001669492	94249413	94249519
ENSE00003785693	94250379	94250544
ENSE00004253702	94247824	94248039

Expression profiles

Bgee: expression breadth ubiquitous, 112 present calls, max score 78.81.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2079 / max 35.6382, expressed in 79 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
4085	0.1240	51
4086	0.0839	24

Top tissues by expression

112 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.81	gold quality
testis	UBERON:0000473	66.95	gold quality
right testis	UBERON:0004534	66.92	gold quality
left testis	UBERON:0004533	66.89	gold quality
apex of heart	UBERON:0002098	65.31	gold quality
sural nerve	UBERON:0015488	65.09	silver quality
skeletal muscle tissue	UBERON:0001134	63.15	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	62.54	gold quality
calcaneal tendon	UBERON:0003701	57.84	gold quality
placenta	UBERON:0001987	57.06	gold quality
stromal cell of endometrium	CL:0002255	56.06	gold quality
bone marrow	UBERON:0002371	55.12	silver quality
hindlimb stylopod muscle	UBERON:0004252	54.91	silver quality
muscle of leg	UBERON:0001383	54.73	gold quality
heart left ventricle	UBERON:0002084	54.59	gold quality
gastrocnemius	UBERON:0001388	53.59	gold quality
cortex of kidney	UBERON:0001225	53.35	gold quality
monocyte	CL:0000576	53.24	gold quality
kidney	UBERON:0002113	53.00	gold quality
adult mammalian kidney	UBERON:0000082	52.89	gold quality
right adrenal gland	UBERON:0001233	52.78	gold quality
blood	UBERON:0000178	52.23	gold quality
islet of Langerhans	UBERON:0000006	51.82	gold quality
heart	UBERON:0000948	51.73	gold quality
tibial artery	UBERON:0007610	51.72	gold quality
popliteal artery	UBERON:0002250	51.70	gold quality
prefrontal cortex	UBERON:0000451	50.33	gold quality
skin of leg	UBERON:0001511	49.87	gold quality
liver	UBERON:0002107	49.83	silver quality
metanephros cortex	UBERON:0010533	49.64	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.11

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.