ARMC10

gene
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Also known as MGC3195SVH

Summary

ARMC10 (armadillo repeat containing 10, HGNC:21706) is a protein-coding gene on chromosome 7q22.1, encoding Armadillo repeat-containing protein 10 (Q8N2F6). May play a role in cell survival and cell growth.

This gene encodes a protein that contains an armadillo repeat and transmembrane domain. The encoded protein decreases the transcriptional activity of the tumor suppressor protein p53 through direct interaction with the DNA-binding domain of p53, and may play a role in cell growth and survival. Upregulation of this gene may play a role in hepatocellular carcinoma. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene, and a pseudogene of this gene is located on the long arm of chromosome 3.

Source: NCBI Gene 83787 — RefSeq curated summary.

At a glance

  • Clinical variants (ClinVar): 69 total — 1 pathogenic
  • Druggable target: yes
  • MANE Select transcript: NM_031905

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:21706
Approved symbolARMC10
Namearmadillo repeat containing 10
Location7q22.1
Locus typegene with protein product
StatusApproved
AliasesMGC3195, SVH
Ensembl geneENSG00000170632
Ensembl biotypeprotein_coding
OMIM611864
Entrez83787

Gene structure

Transcript identifiers

Ensembl transcripts: 43 — 40 protein_coding, 2 nonsense_mediated_decay, 1 retained_intron

ENST00000306450, ENST00000323716, ENST00000323735, ENST00000425331, ENST00000428183, ENST00000431642, ENST00000434153, ENST00000441711, ENST00000454559, ENST00000479145, ENST00000541300, ENST00000873928, ENST00000873929, ENST00000873930, ENST00000873931, ENST00000873932, ENST00000873933, ENST00000873934, ENST00000873935, ENST00000873936, ENST00000873937, ENST00000873938, ENST00000873939, ENST00000873940, ENST00000873941, ENST00000873942, ENST00000873943, ENST00000873944, ENST00000873945, ENST00000873946, ENST00000873947, ENST00000873948, ENST00000873949, ENST00000873950, ENST00000873951, ENST00000873952, ENST00000918992, ENST00000918993, ENST00000966197, ENST00000966198, ENST00000966199, ENST00000966200, ENST00000966201

RefSeq mRNA: 6 — MANE Select: NM_031905 NM_001161009, NM_001161010, NM_001161011, NM_001161012, NM_001161013, NM_031905

CCDS: CCDS55145, CCDS55146, CCDS55147, CCDS55148, CCDS55149, CCDS5728

Canonical transcript exons

ENST00000323716 — 7 exons

ExonStartEnd
ENSE00001132763103083682103083830
ENSE00001245499103075777103075881
ENSE00003580352103092477103092653
ENSE00003583962103097277103097348
ENSE00003647303103086630103086764
ENSE00003727557103098299103099759
ENSE00003847213103075140103075411

Expression profiles

Bgee: expression breadth ubiquitous, 141 present calls, max score 93.44.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 39.2630 / max 246.1887, expressed in 1826 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter IDTPM avgSamples expressed
8027336.27321826
802722.98991523

Top tissues by expression

141 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
prefrontal cortexUBERON:000045193.44gold quality
superior frontal gyrusUBERON:000266192.78gold quality
endometriumUBERON:000129592.59gold quality
cortical plateUBERON:000534392.27gold quality
frontal cortexUBERON:000187092.01gold quality
frontal lobeUBERON:001652592.01gold quality
body of pancreasUBERON:000115092.00gold quality
substantia nigraUBERON:000203891.96gold quality
islet of LangerhansUBERON:000000691.82gold quality
hypothalamusUBERON:000189891.77gold quality
anterior cingulate cortexUBERON:000983591.77gold quality
C1 segment of cervical spinal cordUBERON:000646991.76gold quality
amygdalaUBERON:000187691.74gold quality
temporal lobeUBERON:000187191.69gold quality
cerebral cortexUBERON:000095691.67gold quality
descending thoracic aortaUBERON:000234591.65gold quality
pancreasUBERON:000126491.62gold quality
right coronary arteryUBERON:000162591.57gold quality
dorsolateral prefrontal cortexUBERON:000983491.50gold quality
left ovaryUBERON:000211991.39gold quality
telencephalonUBERON:000189391.38gold quality
ovaryUBERON:000099291.36gold quality
ganglionic eminenceUBERON:000402391.23gold quality
embryoUBERON:000092291.22gold quality
Ammon’s hornUBERON:000195491.15gold quality
Brodmann (1909) area 9UBERON:001354091.08gold quality
thoracic aortaUBERON:000151591.05gold quality
aortaUBERON:000094791.04gold quality
ascending aortaUBERON:000149691.04gold quality
popliteal arteryUBERON:000225091.03gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

ExperimentMarker?Max mean expression
E-ANND-3yes5.55

Regulation

Is transcription factor: no

miRNA regulators (miRDB)

66 targeting ARMC10, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-5011-5P100.0083.465820
HSA-MIR-8485100.0077.574731
HSA-LET-7A-3P100.0074.033932
HSA-LET-7B-3P100.0074.083913
HSA-LET-7F-1-3P100.0074.023928
HSA-MIR-98-3P100.0074.083907
HSA-MIR-190A-3P100.0080.355520
HSA-MIR-548P99.9872.253784
HSA-MIR-4666A-3P99.9671.713434
HSA-MIR-6778-3P99.9667.292693
HSA-MIR-1468-3P99.9672.743797
HSA-MIR-6845-3P99.9466.881439
HSA-MIR-335-3P99.9373.364958
HSA-MIR-450B-5P99.9271.483175
HSA-MIR-153-5P99.8973.866317
HSA-MIR-629-3P99.8567.991875
HSA-MIR-5010-3P99.8370.602357
HSA-MIR-3121-3P99.8271.963630
HSA-MIR-4524A-3P99.7266.852406
HSA-MIR-4699-3P99.7170.153142
HSA-MIR-7-5P99.6770.531809
HSA-MIR-452-5P99.6569.631762
HSA-MIR-4676-3P99.6569.311733
HSA-MIR-892C-3P99.6569.381745
HSA-MIR-4524A-5P99.5771.731193
HSA-MIR-4524B-5P99.5771.681195
HSA-MIR-443799.5265.291266
HSA-MIR-56999.4266.321009
HSA-MIR-425199.4069.193363
HSA-MIR-504-3P99.3067.181745

Literature-anchored findings (GeneRIF, showing 4)

  • a novel gene SVH, up-regulated in hepatocellular carcinoma, was identified; four variants SVH-A, -B, -C, and -D, resulting from alternative splicing in the coding region of the SVH transcript, were observed and localized in the endoplasmic reticulum (PMID:12839973)
  • Data show that the serine S45 site of armadillo repeat containing 10 (ARMC10) can be phosphorylated by AMP-activated protein kinase (AMPK) both in vitro and in vivo. . (PMID:30631047)
  • The oncomodulin receptor ArmC10 enables axon regeneration in mice after nerve injury and neurite outgrowth in human iPSC-derived sensory neurons. (PMID:37556559)
  • ARMC10 regulates mitochondrial dynamics and affects mitochondrial function via the Wnt/beta-catenin signalling pathway involved in ischaemic stroke. (PMID:38924214)

Cross-species orthologs

2 orthologs

OrganismSymbolGene ID
mus_musculusArmc10ENSMUSG00000038525
rattus_norvegicusArmc10ENSRNOG00000012785

Paralogs (10): ARMCX3 (ENSG00000102401), ARMCX5 (ENSG00000125962), ARMCX1 (ENSG00000126947), ARMC12 (ENSG00000157343), GPRASP2 (ENSG00000158301), ARMCX2 (ENSG00000184867), ARMCX4 (ENSG00000196440), GPRASP3 (ENSG00000198908), GPRASP1 (ENSG00000198932), ARMCX6 (ENSG00000198960)

Protein

Protein identifiers

Armadillo repeat-containing protein 10Q8N2F6 (reviewed: Q8N2F6)

Alternative names: Splicing variant involved in hepatocarcinogenesis protein

All UniProt accessions (5): Q8N2F6, C9J5N7, H7BXM8, H7BXQ8, H7C2M7

UniProt curated annotations — full annotation on UniProt →

Function. May play a role in cell survival and cell growth. May suppress the transcriptional activity of p53/TP53.

Subunit / interactions. Interacts with the DNA-binding domain of p53/TP53.

Subcellular location. Endoplasmic reticulum membrane Mitochondrion outer membrane.

Tissue specificity. Expressed in all tissues tested with higher expression in placenta, liver, kidney, heart and brain.

Miscellaneous. Depletion of isoform 2 results in cell apoptosis while its overexpression in cells leads to accelerated growth rate and tumorogenicity.

Isoforms (6)

UniProt IDNamesCanonical?
Q8N2F6-11, SVH-Ayes
Q8N2F6-22, SVH-B
Q8N2F6-33, SVH-C
Q8N2F6-44, SVH-D
Q8N2F6-55
Q8N2F6-66

RefSeq proteins (6): NP_001154481, NP_001154482, NP_001154483, NP_001154484, NP_001154485, NP_114111* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR006911ARM-rpt_domDomain
IPR011989ARM-likeHomologous_superfamily
IPR016024ARM-type_foldHomologous_superfamily
IPR051303Armcx_regulatorFamily

Pfam: PF04826

UniProt features (21 total): modified residue 10, splice variant 4, chain 1, transmembrane region 1, sequence variant 1, sequence conflict 1, repeat 1, region of interest 1, compositionally biased region 1

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q8N2F6-F180.880.68

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Post-translational modifications (10): 45, 50, 45, 50, 45, 50, 45, 50, 45, 85

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 142 (showing top): GOBP_AXO_DENDRITIC_TRANSPORT, GOBP_NEGATIVE_REGULATION_OF_INTRINSIC_APOPTOTIC_SIGNALING_PATHWAY_BY_P53_CLASS_MEDIATOR, GOBP_GROWTH, GOBP_ORGANELLE_TRANSPORT_ALONG_MICROTUBULE, GOBP_NEGATIVE_REGULATION_OF_INTRACELLULAR_SIGNAL_TRANSDUCTION, GOBP_NEGATIVE_REGULATION_OF_INTRINSIC_APOPTOTIC_SIGNALING_PATHWAY, CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_1, GOBP_APOPTOTIC_SIGNALING_PATHWAY, GOCC_MITOCHONDRIAL_ENVELOPE, GOBP_INTRINSIC_APOPTOTIC_SIGNALING_PATHWAY, GOBP_SIGNAL_TRANSDUCTION_BY_P53_CLASS_MEDIATOR, GOBP_POSITIVE_REGULATION_OF_GROWTH, GOBP_NEGATIVE_REGULATION_OF_APOPTOTIC_SIGNALING_PATHWAY, GOBP_REGULATION_OF_SIGNAL_TRANSDUCTION_BY_P53_CLASS_MEDIATOR, GOCC_NEURON_PROJECTION

GO Biological Process (3): positive regulation of growth rate (GO:0040010), negative regulation of apoptotic process (GO:0043066), negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator (GO:1902254)

GO Molecular Function (3): p53 binding (GO:0002039), DNA binding domain binding (GO:0050692), protein binding (GO:0005515)

GO Cellular Component (5): mitochondrion (GO:0005739), mitochondrial outer membrane (GO:0005741), endoplasmic reticulum (GO:0005783), endoplasmic reticulum membrane (GO:0005789), membrane (GO:0016020)

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cytoplasm2
intracellular membrane-bounded organelle2
regulation of growth rate1
positive regulation of growth1
apoptotic process1
regulation of apoptotic process1
negative regulation of programmed cell death1
intrinsic apoptotic signaling pathway by p53 class mediator1
negative regulation of signal transduction by p53 class mediator1
regulation of intrinsic apoptotic signaling pathway by p53 class mediator1
negative regulation of intrinsic apoptotic signaling pathway1
protein binding1
protein domain specific binding1
binding1
mitochondrial membrane1
organelle outer membrane1
endomembrane system1
organelle membrane1
nuclear outer membrane-endoplasmic reticulum membrane network1
endoplasmic reticulum subcompartment1
cellular anatomical structure1

Protein interactions and networks

STRING

1179 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
ARMC10TRAK2O60296635
ARMC10RHOT1Q8IXI2596
ARMC10MAP3K9P80192508
ARMC10MTFR1LQ9H019444
ARMC10FBXL13Q8NEE6429
ARMC10LRIT2A6NDA9423
ARMC10OGDHLQ9ULD0414
ARMC10TCEA2Q15560410
ARMC10SMARCD1Q96GM5395
ARMC10SPDYE2Q495Y8394
ARMC10ARMC1Q9NVT9382
ARMC10HTTP42858372
ARMC10HDAC7Q8WUI4365
ARMC10ILKP57043360
ARMC10MROH8Q9H579360

IntAct

21 interactions, top by confidence:

ABTypeScore
EXOC1EXOC5psi-mi:“MI:0914”(association)0.730
LPAR1TMEM223psi-mi:“MI:0914”(association)0.530
MMEpsi-mi:“MI:0914”(association)0.350
COQ9NDUFS8psi-mi:“MI:0914”(association)0.350
CUL4ADDX39Apsi-mi:“MI:0914”(association)0.350
LHFPL5GNAQpsi-mi:“MI:0914”(association)0.350
ARMC10ACTA2psi-mi:“MI:0914”(association)0.350
LHFPL5TMEM259psi-mi:“MI:0914”(association)0.350
ARMC10IGHG2psi-mi:“MI:0914”(association)0.350
MTCH2IPO5psi-mi:“MI:0914”(association)0.350
CHRM4EXOC5psi-mi:“MI:0914”(association)0.350
CHRNB2SNX2psi-mi:“MI:0914”(association)0.350
ERFDVL2psi-mi:“MI:0914”(association)0.350
FBXL16STK25psi-mi:“MI:0914”(association)0.350
GSDMEDDX39Apsi-mi:“MI:0914”(association)0.350
HPNDDX39Apsi-mi:“MI:0914”(association)0.350
VSIG1RIMOC1psi-mi:“MI:0914”(association)0.350
SLC39A11ESYT2psi-mi:“MI:0914”(association)0.350
PARLHAX1psi-mi:“MI:2364”(proximity)0.270

BioGRID (43): ARMC10 (Affinity Capture-MS), ARMC10 (Affinity Capture-RNA), ARMC10 (Affinity Capture-MS), ARMC10 (Two-hybrid), TCEA2 (Two-hybrid), FAM25A (Two-hybrid), FAM25G (Two-hybrid), CAPNS2 (Two-hybrid), FAM25C (Two-hybrid), ARMC10 (Proximity Label-MS), ARMC10 (Proximity Label-MS), ARMC10 (Proximity Label-MS), ARMC10 (Proximity Label-MS), ARMC10 (Proximity Label-MS), ARMC10 (Proximity Label-MS)

ESM2 similar proteins: A0JM23, A6H7D1, A7MBF6, A8C752, A8C754, B1AY13, F4IG73, F4JD14, O17482, O75165, O88480, O95876, P0C6R2, P0CI65, P50851, Q1RMS6, Q32NR9, Q3UHQ6, Q3V129, Q5R4M2, Q5TIA1, Q5ZL91, Q642P2, Q69YN4, Q69ZR2, Q6AZT7, Q6PIY5, Q6ZS30, Q7Z494, Q86VV8, Q8C456, Q8JGR7, Q8N2F6, Q8NEN0, Q8NFP9, Q8R4Y8, Q8TEL6, Q8W4P9, Q91VB4, Q969F9

Diamond homologs: B1WBW4, Q3UZB0, Q5H9R4, Q5JY77, Q5R4B2, Q5R7U0, Q5R9J3, Q5RDG2, Q5U310, Q5U4C1, Q5XID7, Q6A058, Q6P1M9, Q6PI77, Q7L311, Q8BHS6, Q8BUY8, Q8N2F6, Q920R4, Q96D09, Q9BE11, Q9CX83, Q9D0L7, Q9P291, Q9UH62, Q6PB60, Q71HP2, Q66HF0, Q7L4S7, Q8K3A6

SIGNOR signaling

4 interactions.

AEffectBMechanism
AMPK“up-regulates activity”ARMC10phosphorylation
ARMC10“down-regulates activity”TP53binding

Disease & clinical

Clinical variants and AI predictions

ClinVar

69 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic1
Likely pathogenic0
Uncertain significance53
Likely benign3
Benign0

Top pathogenic / likely-pathogenic (1)

Variant IDHGVSClassification
60283GRCh38/hg38 7q22.1-22.3(chr7:102808199-105701108)x1Pathogenic

SpliceAI

1687 predictions. Top by Δscore:

VariantEffectΔscore
7:103083677:T:Gacceptor_gain1.0000
7:103083678:GCAGA:Gacceptor_loss1.0000
7:103083679:CAGAA:Cacceptor_loss1.0000
7:103083680:A:AGacceptor_gain1.0000
7:103083681:G:GAacceptor_gain1.0000
7:103083681:GA:Gacceptor_gain1.0000
7:103083681:GAA:Gacceptor_gain1.0000
7:103083681:GAAGA:Gacceptor_gain1.0000
7:103083827:CCAA:Cdonor_gain1.0000
7:103083828:CAAGT:Cdonor_loss1.0000
7:103083831:G:Cdonor_loss1.0000
7:103083831:G:GGdonor_gain1.0000
7:103083833:AA:Adonor_loss1.0000
7:103086624:TCGTA:Tacceptor_loss1.0000
7:103086625:CGTAG:Cacceptor_loss1.0000
7:103086626:GTAGG:Gacceptor_loss1.0000
7:103086627:TAGG:Tacceptor_loss1.0000
7:103086628:A:AGacceptor_gain1.0000
7:103086628:AGGC:Aacceptor_loss1.0000
7:103086629:G:GGacceptor_gain1.0000
7:103086629:G:GTacceptor_loss1.0000
7:103086629:GGCT:Gacceptor_gain1.0000
7:103086763:AGGT:Adonor_loss1.0000
7:103086764:GGT:Gdonor_loss1.0000
7:103086765:G:GCdonor_loss1.0000
7:103086765:G:GGdonor_gain1.0000
7:103086766:T:Gdonor_loss1.0000
7:103097342:TGCCC:Tdonor_gain1.0000
7:103097349:G:GGdonor_gain1.0000
7:103075409:CAGGT:Cdonor_loss0.9900

AlphaMissense

2209 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
7:103083816:T:CF127L0.991
7:103083818:T:AF127L0.991
7:103083818:T:GF127L0.991
7:103086732:A:CS166R0.985
7:103086734:T:AS166R0.985
7:103086734:T:GS166R0.985
7:103086749:T:AN171K0.977
7:103086749:T:GN171K0.977
7:103086640:G:CR135P0.975
7:103086730:T:CL165P0.974
7:103083730:T:CL98P0.966
7:103075328:G:AG19D0.965
7:103075322:G:AG17D0.964
7:103083811:C:AA125E0.964
7:103083739:T:CL101P0.963
7:103086664:T:AV143D0.961
7:103086717:G:CA161P0.961
7:103086708:G:CA158P0.960
7:103075310:G:AG13D0.959
7:103083786:G:CA117P0.957
7:103075309:G:CG13R0.955
7:103092547:T:CL200P0.955
7:103075321:G:CG17R0.952
7:103086721:T:CL162P0.952
7:103075327:G:CG19R0.945
7:103083810:G:CA125P0.941
7:103086637:T:GI134S0.935
7:103075333:T:CC21R0.934
7:103086637:T:AI134N0.934
7:103086701:A:CK155N0.934

dbSNP variants (sampled 300 via entrez): RS1000349097 (7:103075119 G>A), RS1000421039 (7:103075219 C>A,G,T), RS1000483619 (7:103096998 T>C), RS1000496598 (7:103073466 G>A), RS1000605143 (7:103096634 G>A,C), RS1000754246 (7:103074481 C>T), RS1000957763 (7:103078494 G>A,C), RS1001083476 (7:103085482 G>A), RS1001359407 (7:103091679 A>G,T), RS1001416536 (7:103076388 G>T), RS1001617607 (7:103074620 G>A,C,T), RS1001688128 (7:103095600 C>G,T), RS1001737482 (7:103089301 G>A), RS1001859673 (7:103086428 C>A), RS1001887035 (7:103098605 T>G)

Disease associations

OMIM: gene MIM:611864 | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

0 associations (top):

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (1): CHEMBL5465331 (SINGLE PROTEIN)

PharmGKB: 1 entry (VIP=true, CPIC=false)

CTD chemical–gene interactions

28 total (human), top 28 by PubMed support.

ChemicalActions (top 5)PubMed papers
FR900359increases phosphorylation1
sodium arsenatedecreases expression1
decabromobiphenyl etheraffects expression1
beta-lapachoneincreases expression1
sodium arseniteaffects cotreatment, increases abundance, increases expression1
di-n-butylphosphoric acidaffects expression1
perfluorooctane sulfonic acidincreases expression1
CGP 52608increases reaction, affects binding1
perfluorohexanesulfonic acidincreases expression1
Grape Seed Proanthocyanidinsaffects cotreatment, decreases expression1
NSC 689534affects binding, decreases expression1
Resveratrolaffects cotreatment, increases expression1
Air Pollutantsincreases abundance, decreases expression1
Arsenicaffects cotreatment, increases abundance, increases expression1
Atrazineincreases expression1
Catechinaffects cotreatment, decreases expression1
Copperaffects binding, decreases expression1
Formaldehydedecreases expression1
Ivermectindecreases expression1
Methyl Methanesulfonatedecreases expression1
Plant Extractsincreases expression, affects cotreatment1
Rotenonedecreases expression1
Thiramdecreases expression1
Aflatoxin B1decreases methylation1
Cadmium Chloridedecreases expression1
Copper Sulfatedecreases expression1
Genisteinincreases expression, increases reaction1
Particulate Matterdecreases expression, increases abundance1

ChEMBL screening assays

1 unique, capped per target: 1 binding

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL5338444BindingBinding affinity to Armc10 (unknown origin) at 200 uM preincubated for 2 hrs followed by pronase addition and measured after 30 mins by coomassie blue staining based SDS-PAGE gel analysisStructurally Diverse Alkaloids with Anti-Renal-Fibrosis Activity from the Centipede Scolopendra subspinipes mutilans. — J Nat Prod

Cellosaurus cell lines

2 cell lines: 2 cancer cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_SD50HAP1 ARMC10 (-) 1Cancer cell lineMale
CVCL_SD51HAP1 ARMC10 (-) 2Cancer cell lineMale

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.

No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.