ARNT2-DT

Summary

ARNT2-DT (ARNT2 divergent transcript, HGNC:56077) is a long non-coding RNA gene on chromosome 15q25.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56077
Approved symbol	ARNT2-DT
Name	ARNT2 divergent transcript
Location	15q25.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000259495
Ensembl biotype	lncRNA
Entrez	101929560
RNAcentral	URS00026A2492 — lncRNA, 996 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 35 — 35 lncRNA

ENST00000559008, ENST00000559267, ENST00000653750, ENST00000656160, ENST00000794190, ENST00000794191, ENST00000794192, ENST00000794193, ENST00000794194, ENST00000794195, ENST00000794196, ENST00000794197, ENST00000794198, ENST00000794199, ENST00000794200, ENST00000794201, ENST00000794202, ENST00000794203, ENST00000794204, ENST00000794205, ENST00000794206, ENST00000794207, ENST00000794208, ENST00000794209, ENST00000794210, ENST00000794211, ENST00000794212, ENST00000794213, ENST00000794214, ENST00000794215, ENST00000794216, ENST00000794217, ENST00000794218, ENST00000794219, ENST00000794220

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000559008 — 3 exons

Exon	Start	End
ENSE00002562596	80397944	80398006
ENSE00002564529	80373413	80380153
ENSE00002572845	80403502	80403575

Expression profiles

Bgee: expression breadth ubiquitous, 153 present calls, max score 80.94.

Top tissues by expression

233 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
C1 segment of cervical spinal cord	UBERON:0006469	80.94	gold quality
caudate nucleus	UBERON:0001873	78.68	gold quality
nucleus accumbens	UBERON:0001882	78.50	gold quality
putamen	UBERON:0001874	77.86	gold quality
spinal cord	UBERON:0002240	77.38	gold quality
hypothalamus	UBERON:0001898	76.25	gold quality
amygdala	UBERON:0001876	75.60	gold quality
anterior cingulate cortex	UBERON:0009835	75.35	gold quality
metanephros cortex	UBERON:0010533	75.15	gold quality
Brodmann (1909) area 9	UBERON:0013540	75.04	gold quality
ventricular zone	UBERON:0003053	74.76	gold quality
islet of Langerhans	UBERON:0000006	74.13	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	74.10	gold quality
right frontal lobe	UBERON:0002810	74.00	gold quality
ganglionic eminence	UBERON:0004023	73.71	gold quality
cerebellar hemisphere	UBERON:0002245	73.51	gold quality
cerebellar cortex	UBERON:0002129	73.45	gold quality
prefrontal cortex	UBERON:0000451	73.33	gold quality
adult mammalian kidney	UBERON:0000082	73.12	gold quality
right hemisphere of cerebellum	UBERON:0014890	73.01	gold quality
substantia nigra	UBERON:0002038	71.95	gold quality
cerebellum	UBERON:0002037	71.89	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	71.83	gold quality
popliteal artery	UBERON:0002250	71.76	gold quality
tibial artery	UBERON:0007610	71.75	gold quality
cortex of kidney	UBERON:0001225	71.42	gold quality
adenohypophysis	UBERON:0002196	70.99	gold quality
cortical plate	UBERON:0005343	70.54	gold quality
right uterine tube	UBERON:0001302	70.08	gold quality
forebrain	UBERON:0001890	70.07	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.22

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.