ARPP21
geneOn this page
Also known as ARPP-21TARPPR3HDM3
Summary
ARPP21 (cAMP regulated phosphoprotein 21, HGNC:16968) is a protein-coding gene on chromosome 3p22.3, encoding cAMP-regulated phosphoprotein 21 (Q9UBL0). Isoform 2 may act as a competitive inhibitor of calmodulin-dependent enzymes such as calcineurin in neurons.
This gene encodes a cAMP-regulated phosphoprotein. The encoded protein is enriched in the caudate nucleus and cerebellar cortex. A similar protein in mouse may be involved in regulating the effects of dopamine in the basal ganglia. Alternate splicing results in multiple transcript variants.
Source: NCBI Gene 10777 — RefSeq curated summary.
At a glance
- Gene–disease (curated): amyotrophic lateral sclerosis (Limited, ClinGen)
- GWAS associations: 21
- Clinical variants (ClinVar): 121 total — 2 pathogenic
- MANE Select transcript:
NM_001385562
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:16968 |
| Approved symbol | ARPP21 |
| Name | cAMP regulated phosphoprotein 21 |
| Location | 3p22.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ARPP-21, TARPP, R3HDM3 |
| Ensembl gene | ENSG00000172995 |
| Ensembl biotype | protein_coding |
| OMIM | 605488 |
| Entrez | 10777 |
Gene structure
Transcript identifiers
Ensembl transcripts: 57 — 44 protein_coding, 6 protein_coding_CDS_not_defined, 4 nonsense_mediated_decay, 3 retained_intron
ENST00000187397, ENST00000396481, ENST00000396482, ENST00000412048, ENST00000413378, ENST00000414496, ENST00000417925, ENST00000419330, ENST00000421492, ENST00000425289, ENST00000427542, ENST00000427590, ENST00000428373, ENST00000432450, ENST00000432682, ENST00000434383, ENST00000436702, ENST00000438071, ENST00000438577, ENST00000441454, ENST00000444190, ENST00000446068, ENST00000449196, ENST00000450234, ENST00000452563, ENST00000457165, ENST00000461826, ENST00000462173, ENST00000463970, ENST00000473138, ENST00000474696, ENST00000476052, ENST00000476327, ENST00000481854, ENST00000494494, ENST00000684406, ENST00000909278, ENST00000909279, ENST00000946207, ENST00000946208, ENST00000946209, ENST00000946210, ENST00000946211, ENST00000946212, ENST00000946213, ENST00000946214, ENST00000946215, ENST00000946216, ENST00000946217, ENST00000946218, ENST00000946219, ENST00000946220, ENST00000946221, ENST00000946222, ENST00000946223, ENST00000946224, ENST00000946225
RefSeq mRNA: 49 — MANE Select: NM_001385562
NM_001025068, NM_001025069, NM_001267616, NM_001267617, NM_001267618, NM_001267619, NM_001385484, NM_001385485, NM_001385486, NM_001385487, NM_001385488, NM_001385489, NM_001385490, NM_001385491, NM_001385492, NM_001385495, NM_001385496, NM_001385497, NM_001385517, NM_001385536, NM_001385556, NM_001385558, NM_001385562, NM_001385563, NM_001385564, NM_001385565, NM_001385566, NM_001385567, NM_001385573, NM_001385574, NM_001385576, NM_001385577, NM_001385578, NM_001385580, NM_001385581, NM_001385582, NM_001385584, NM_001385585, NM_001385587, NM_001385588, NM_001385589, NM_001385590, NM_001385591, NM_001385592, NM_001385593, NM_001385594, NM_001385595, NM_016300, NM_198399
CCDS: CCDS2661, CCDS43063, CCDS58823, CCDS58824, CCDS93238
Canonical transcript exons
ENST00000684406 — 21 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000491952 | 35737178 | 35737362 |
| ENSE00001364970 | 35679787 | 35679960 |
| ENSE00001388290 | 35687739 | 35687883 |
| ENSE00001592275 | 35690865 | 35691005 |
| ENSE00003471000 | 35743839 | 35743965 |
| ENSE00003497289 | 35721605 | 35721834 |
| ENSE00003542928 | 35683726 | 35683815 |
| ENSE00003549587 | 35682848 | 35682889 |
| ENSE00003593591 | 35715439 | 35715476 |
| ENSE00003621917 | 35792382 | 35792530 |
| ENSE00003622980 | 35739317 | 35739577 |
| ENSE00003636106 | 35717298 | 35717357 |
| ENSE00003639168 | 35738214 | 35738318 |
| ENSE00003649279 | 35706974 | 35707082 |
| ENSE00003664931 | 35690081 | 35690140 |
| ENSE00003665121 | 35708969 | 35709070 |
| ENSE00003670101 | 35689307 | 35689385 |
| ENSE00003673748 | 35729303 | 35729536 |
| ENSE00003794213 | 35681714 | 35681880 |
| ENSE00003919931 | 35639525 | 35640398 |
| ENSE00003920601 | 35793701 | 35794486 |
Expression profiles
Bgee: expression breadth ubiquitous, 197 present calls, max score 99.60.
FANTOM5 (CAGE): breadth broad, TPM avg 20.3809 / max 2692.0691, expressed in 306 samples.
FANTOM5 promoters (37 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 36011 | 8.5256 | 154 |
| 36012 | 3.3139 | 123 |
| 35995 | 2.5154 | 156 |
| 35981 | 2.0378 | 199 |
| 36008 | 0.4906 | 99 |
| 35983 | 0.3997 | 95 |
| 36013 | 0.3101 | 79 |
| 35993 | 0.2984 | 99 |
| 36014 | 0.2613 | 41 |
| 35980 | 0.2181 | 86 |
Top tissues by expression
284 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| lateral globus pallidus | UBERON:0002476 | 99.60 | gold quality |
| putamen | UBERON:0001874 | 99.45 | gold quality |
| nucleus accumbens | UBERON:0001882 | 99.43 | gold quality |
| caudate nucleus | UBERON:0001873 | 99.41 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 99.26 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 98.86 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 98.85 | gold quality |
| cerebellar cortex | UBERON:0002129 | 98.84 | gold quality |
| cortical plate | UBERON:0005343 | 98.53 | gold quality |
| cerebellum | UBERON:0002037 | 97.94 | gold quality |
| primary visual cortex | UBERON:0002436 | 97.86 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 97.86 | gold quality |
| right frontal lobe | UBERON:0002810 | 97.33 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 97.18 | gold quality |
| gastrocnemius | UBERON:0001388 | 96.93 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 96.72 | gold quality |
| prefrontal cortex | UBERON:0000451 | 96.43 | gold quality |
| cerebellar vermis | UBERON:0004720 | 96.36 | gold quality |
| frontal cortex | UBERON:0001870 | 96.05 | gold quality |
| frontal lobe | UBERON:0016525 | 96.05 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 96.03 | gold quality |
| cingulate cortex | UBERON:0003027 | 95.96 | gold quality |
| neocortex | UBERON:0001950 | 95.81 | gold quality |
| telencephalon | UBERON:0001893 | 95.58 | gold quality |
| amygdala | UBERON:0001876 | 95.10 | gold quality |
| cerebral cortex | UBERON:0000956 | 94.83 | gold quality |
| muscle of leg | UBERON:0001383 | 94.80 | gold quality |
| occipital lobe | UBERON:0002021 | 94.58 | gold quality |
| temporal lobe | UBERON:0001871 | 94.33 | gold quality |
| endothelial cell | CL:0000115 | 94.06 | gold quality |
Single-cell (SCXA)
Detected in 12 experiment(s), a significant marker in 11.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-75140 | yes | 836.60 |
| E-CURD-6 | yes | 504.32 |
| E-HCAD-5 | yes | 369.01 |
| E-HCAD-25 | yes | 87.84 |
| E-HCAD-6 | yes | 68.05 |
| E-HCAD-35 | yes | 66.68 |
| E-HCAD-4 | yes | 41.29 |
| E-CURD-112 | yes | 37.09 |
| E-MTAB-9067 | yes | 20.57 |
| E-ANND-3 | yes | 7.27 |
| E-CURD-122 | yes | 5.66 |
| E-CURD-79 | no | 1605.58 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
144 targeting ARPP21, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-188-3P | 100.00 | 68.76 | 1240 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4481 | 100.00 | 66.42 | 1669 |
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-4745-5P | 99.98 | 65.95 | 1028 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-4725-3P | 99.96 | 69.53 | 2520 |
| HSA-MIR-6780B-5P | 99.96 | 69.60 | 2562 |
| HSA-MIR-2110 | 99.96 | 66.68 | 1930 |
| HSA-MIR-3143 | 99.93 | 71.96 | 3104 |
| HSA-MIR-381-3P | 99.93 | 71.87 | 2854 |
| HSA-MIR-515-5P | 99.92 | 69.82 | 2343 |
| HSA-MIR-519E-5P | 99.92 | 69.62 | 2358 |
| HSA-MIR-300 | 99.92 | 71.76 | 2856 |
| HSA-MIR-205-3P | 99.92 | 69.92 | 3165 |
| HSA-MIR-10527-5P | 99.91 | 72.28 | 3754 |
| HSA-MIR-1297 | 99.91 | 73.41 | 3162 |
| HSA-MIR-498-3P | 99.91 | 71.27 | 1114 |
| HSA-MIR-4493 | 99.90 | 66.48 | 977 |
| HSA-MIR-548E-5P | 99.89 | 72.73 | 4486 |
Literature-anchored findings (GeneRIF, showing 3)
- Interstitial deletion of 3p22.3p22.2 encompassing ARPP21 and CLASP2 is a potential pathogenic factor for a syndromic form of intellectual disability. (PMID:24127197)
- Mutation analysis of GLT8D1 and ARPP21 genes in amyotrophic lateral sclerosis patients from mainland China. (PMID:31653410)
- Genetic analysis of GLT8D1 and ARPP21 in Australian familial and sporadic amyotrophic lateral sclerosis. (PMID:33581934)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Arpp21 | ENSMUSG00000032503 |
| rattus_norvegicus | Arpp21 | ENSRNOG00000008919 |
| drosophila_melanogaster | enc | FBGN0004875 |
| caenorhabditis_elegans | WBGENE00022664 |
Paralogs (2): R3HDM1 (ENSG00000048991), R3HDM2 (ENSG00000179912)
Protein
Protein identifiers
cAMP-regulated phosphoprotein 21 — Q9UBL0 (reviewed: Q9UBL0)
Alternative names: Thymocyte cAMP-regulated phosphoprotein
All UniProt accessions (16): Q9UBL0, A0A804HI65, A8K1F3, C9J091, C9J2U3, C9J5R1, C9JD93, C9JI74, C9JQQ6, C9JTF2, C9JTX6, F8WDL2, H7C0P9, H7C1B6, H7C2X8, H7C3J7
UniProt curated annotations — full annotation on UniProt →
Function. Isoform 2 may act as a competitive inhibitor of calmodulin-dependent enzymes such as calcineurin in neurons.
Subunit / interactions. Interacts with CALM1.
Subcellular location. Cytoplasm.
Tissue specificity. Isoform 2 is expressed in brain. Isoform 1 is present in immature thymocytes (at protein level).
Post-translational modifications. Phosphorylation at Ser-56 favors interaction with CALM1. Isoform 1 is methylated by CARM1 at Arg-655 in immature thymocytes.
Isoforms (6)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9UBL0-1 | 1, TARPP | yes |
| Q9UBL0-2 | 2, ARPP-21 | |
| Q9UBL0-3 | 3 | |
| Q9UBL0-4 | 4 | |
| Q9UBL0-5 | 5 | |
| Q9UBL0-6 | 6 |
RefSeq proteins (49): NP_001020239, NP_001020240, NP_001254545, NP_001254546, NP_001254547, NP_001254548, NP_001372413, NP_001372414, NP_001372415, NP_001372416, NP_001372417, NP_001372418, NP_001372419, NP_001372420, NP_001372421, NP_001372424, NP_001372425, NP_001372426, NP_001372446, NP_001372465, NP_001372485, NP_001372487, NP_001372491, NP_001372492, NP_001372493, NP_001372494, NP_001372495, NP_001372496, NP_001372502, NP_001372503, NP_001372505, NP_001372506, NP_001372507, NP_001372509, NP_001372510, NP_001372511, NP_001372513, NP_001372514, NP_001372516, NP_001372517, NP_001372518, NP_001372519, NP_001372520, NP_001372521, NP_001372522, NP_001372523, NP_001372524, NP_057384, NP_938409 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001374 | R3H_dom | Domain |
| IPR024771 | SUZ | Domain |
| IPR036867 | R3H_dom_sf | Homologous_superfamily |
| IPR051937 | R3H_domain_containing | Family |
Pfam: PF01424, PF12752
UniProt features (38 total): compositionally biased region 10, modified residue 9, splice variant 8, region of interest 5, domain 2, initiator methionine 1, chain 1, sequence conflict 1, coiled-coil region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9UBL0-F1 | 52.34 | 0.12 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (9): 2, 33, 56, 134, 300, 363, 383, 562, 655
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 172 (showing top):
TGCTGCT_MIR15A_MIR16_MIR15B_MIR195_MIR424_MIR497, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_UP, MEF2_02, HNF1_Q6, CAGCTG_AP4_Q5, CEBPB_01, WTGAAAT_UNKNOWN, GRE_C, chr3p22, TGANTCA_AP1_C, MYOD_Q6, IRF_Q6, AACTTT_UNKNOWN, HNF1_C
GO Biological Process (1): cellular response to heat (GO:0034605)
GO Molecular Function (3): nucleic acid binding (GO:0003676), calmodulin binding (GO:0005516), protein binding (GO:0005515)
GO Cellular Component (1): cytoplasm (GO:0005737)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| binding | 2 |
| response to heat | 1 |
| cellular response to stress | 1 |
| protein binding | 1 |
| intracellular anatomical structure | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
1342 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ARPP21 | ARPP19 | P56211 | 890 |
| ARPP21 | PPP1R1B | Q9UD71 | 833 |
| ARPP21 | ENSA | O43768 | 670 |
| ARPP21 | CAMK1 | Q14012 | 637 |
| ARPP21 | BCL11B | Q9C0K0 | 524 |
| ARPP21 | PCP4 | P48539 | 520 |
| ARPP21 | ADORA2A | P29274 | 494 |
| ARPP21 | DRD1 | P21728 | 483 |
| ARPP21 | ANO3 | Q9BYT9 | 461 |
| ARPP21 | RASD2 | Q96D21 | 458 |
| ARPP21 | GPR88 | Q9GZN0 | 458 |
| ARPP21 | CALML4 | Q96GE6 | 458 |
| ARPP21 | CALM1 | P02593 | 448 |
| ARPP21 | SV2B | Q7L1I2 | 445 |
| ARPP21 | KIAA0930 | Q6ICG6 | 444 |
| ARPP21 | CALML6 | Q8TD86 | 444 |
IntAct
3 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TERF1 | ARPP21 | psi-mi:“MI:0915”(physical association) | 0.370 |
| TERF2IP | ARPP21 | psi-mi:“MI:0915”(physical association) | 0.370 |
BioGRID (4): ARPP21 (Synthetic Growth Defect), ARPP21 (Affinity Capture-RNA), ARPP21 (Two-hybrid), ARPP21 (Two-hybrid)
ESM2 similar proteins: A0A0G2JTY4, A0JNC2, A2AQ25, E1BEQ5, O09000, O57539, O70305, O93602, P15336, P16951, P17544, P70365, P97305, Q00969, Q02930, Q12968, Q14157, Q15032, Q15596, Q15788, Q1LY51, Q4PJW2, Q4VCS5, Q5R9C9, Q5SFM8, Q5T5P2, Q5T6F2, Q61026, Q62415, Q6GP15, Q80TM6, Q80X50, Q86YP4, Q8CHY6, Q8IY63, Q8VCB2, Q8VHG2, Q8VHR5, Q8WXI9, Q91VX2
Diamond homologs: A0JNC2, Q15032, Q80TM6, Q8MSX1, Q9DCB4, Q9UBL0, Q9Y2K5, Q5R6X9, Q7M2N1
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PRKACA | “up-regulates activity” | ARPP21 | phosphorylation |
Disease & clinical
Clinical variants and AI predictions
ClinVar
121 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 0 |
| Uncertain significance | 103 |
| Likely benign | 5 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (2)
| Variant ID | HGVS | Classification |
|---|---|---|
| 57769 | GRCh38/hg38 3p22.3-22.2(chr3:32322382-36775606)x1 | Pathogenic |
| 57770 | GRCh38/hg38 3p22.3-22.2(chr3:33062199-36829440)x1 | Pathogenic |
SpliceAI
4157 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 3:35679784:CA:C | acceptor_loss | 1.0000 |
| 3:35679785:A:AG | acceptor_gain | 1.0000 |
| 3:35679785:AG:A | acceptor_gain | 1.0000 |
| 3:35679785:AGGTT:A | acceptor_gain | 1.0000 |
| 3:35679786:G:GT | acceptor_gain | 1.0000 |
| 3:35679786:GG:G | acceptor_gain | 1.0000 |
| 3:35679786:GGT:G | acceptor_gain | 1.0000 |
| 3:35679786:GGTT:G | acceptor_gain | 1.0000 |
| 3:35679786:GGTTG:G | acceptor_gain | 1.0000 |
| 3:35679921:G:GG | donor_gain | 1.0000 |
| 3:35679959:AGGTA:A | donor_loss | 1.0000 |
| 3:35679960:GGTAA:G | donor_loss | 1.0000 |
| 3:35679961:G:A | donor_loss | 1.0000 |
| 3:35679962:T:A | donor_loss | 1.0000 |
| 3:35681712:AG:A | acceptor_gain | 1.0000 |
| 3:35681713:GG:G | acceptor_gain | 1.0000 |
| 3:35681742:A:AG | acceptor_gain | 1.0000 |
| 3:35681742:ATCT:A | acceptor_gain | 1.0000 |
| 3:35681742:ATCTG:A | acceptor_gain | 1.0000 |
| 3:35681745:T:TA | acceptor_gain | 1.0000 |
| 3:35681877:GCAG:G | donor_gain | 1.0000 |
| 3:35681881:G:GA | donor_loss | 1.0000 |
| 3:35681881:G:GG | donor_gain | 1.0000 |
| 3:35682829:T:G | acceptor_gain | 1.0000 |
| 3:35682839:A:AG | acceptor_gain | 1.0000 |
| 3:35682840:A:G | acceptor_gain | 1.0000 |
| 3:35682843:T:G | acceptor_gain | 1.0000 |
| 3:35682846:A:AG | acceptor_gain | 1.0000 |
| 3:35682847:G:GG | acceptor_gain | 1.0000 |
| 3:35683724:A:AG | acceptor_gain | 1.0000 |
AlphaMissense
5565 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 3:35689327:G:C | D143H | 1.000 |
| 3:35689354:T:C | F152L | 1.000 |
| 3:35689355:T:C | F152S | 1.000 |
| 3:35689355:T:G | F152C | 1.000 |
| 3:35689356:T:A | F152L | 1.000 |
| 3:35689356:T:G | F152L | 1.000 |
| 3:35689358:T:C | L153P | 1.000 |
| 3:35690095:T:C | L167P | 1.000 |
| 3:35690882:T:C | F188S | 1.000 |
| 3:35690906:G:C | R196T | 1.000 |
| 3:35690906:G:T | R196M | 1.000 |
| 3:35690907:G:C | R196S | 1.000 |
| 3:35690907:G:T | R196S | 1.000 |
| 3:35690909:T:A | M197K | 1.000 |
| 3:35690909:T:C | M197T | 1.000 |
| 3:35690909:T:G | M197R | 1.000 |
| 3:35690910:G:A | M197I | 1.000 |
| 3:35690910:G:C | M197I | 1.000 |
| 3:35690910:G:T | M197I | 1.000 |
| 3:35690912:T:C | L198P | 1.000 |
| 3:35690915:T:A | V199D | 1.000 |
| 3:35690917:C:G | H200D | 1.000 |
| 3:35690918:A:G | H200R | 1.000 |
| 3:35690919:T:A | H200Q | 1.000 |
| 3:35690919:T:G | H200Q | 1.000 |
| 3:35690921:G:C | R201P | 1.000 |
| 3:35690926:G:C | A203P | 1.000 |
| 3:35690927:C:A | A203E | 1.000 |
| 3:35690947:C:G | H210D | 1.000 |
| 3:35690975:T:A | V219D | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000002310 (3:35725769 C>T), RS1000052628 (3:35683504 T>A,C), RS1000063886 (3:35650132 C>T), RS1000082330 (3:35656259 A>G), RS1000086786 (3:35737825 G>A,T), RS1000098981 (3:35768583 G>A,T), RS1000099649 (3:35788243 A>T), RS1000119334 (3:35658833 C>T), RS1000139038 (3:35749771 C>A,T), RS1000152899 (3:35636895 A>G), RS1000191606 (3:35665958 G>C), RS1000198891 (3:35744312 G>C,T), RS1000199723 (3:35655940 C>A,G,T), RS1000251594 (3:35683011 G>A,T), RS1000258926 (3:35784948 C>G,T)
Disease associations
OMIM: gene MIM:605488 | disease phenotypes: MIM:189800, MIM:602440
GenCC curated gene-disease
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| amyotrophic lateral sclerosis | Limited | AD |
Mondo (4): preeclampsia (MONDO:0005081), prostate cancer (MONDO:0008315), primary ovarian failure (MONDO:0005387), monomelic amyotrophy (MONDO:0011224)
Orphanet (4): Preeclampsia (Orphanet:275555), Familial prostate cancer (Orphanet:1331), Monomelic amyotrophy (Orphanet:65684), NON RARE IN EUROPE: Primary ovarian failure (Orphanet:619)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
21 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000477_39 | Cognitive performance | 2.000000e-07 |
| GCST000894_1 | Entorhinal cortical thickness | 6.000000e-08 |
| GCST003123_8 | Severe influenza A (H1N1) infection | 2.000000e-08 |
| GCST005212_5 | Asthma | 9.000000e-06 |
| GCST005411_4 | Thrombin-activatable fibrinolysis inhibitor activation peptide | 9.000000e-07 |
| GCST005830_134 | Hand grip strength | 2.000000e-09 |
| GCST006269_1183 | General cognitive ability | 3.000000e-08 |
| GCST006940_92 | Neurociticism | 1.000000e-11 |
| GCST006941_58 | Irritable mood | 2.000000e-08 |
| GCST006946_21 | Worry too long after an embarrassing experience | 1.000000e-12 |
| GCST006946_22 | Worry too long after an embarrassing experience | 1.000000e-08 |
| GCST006950_50 | Feeling worry | 7.000000e-09 |
| GCST007325_107 | General risk tolerance (MTAG) | 2.000000e-10 |
| GCST007709_12 | General factor of neuroticism | 1.000000e-10 |
| GCST008529_32 | Tea consumption | 5.000000e-06 |
| GCST009439_13 | Age-related cognitive decline (language) (slope of z-scores) | 3.000000e-07 |
| GCST009444_2 | Age-related cognitive decline (global cognition) (slope of z-scores) | 1.000000e-06 |
| GCST010988_135 | Adult body size | 1.000000e-09 |
| GCST90000047_90 | Age at first sexual intercourse | 1.000000e-11 |
| GCST90020025_1937 | Waist-to-hip ratio adjusted for BMI | 5.000000e-11 |
| GCST90020027_168 | Waist-hip index | 8.000000e-11 |
EFO canonical traits (13, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0003926 | neuropsychological test |
| EFO:0004840 | cortical thickness |
| EFO:1001488 | influenza A (H1N1) |
| EFO:0006941 | grip strength measurement |
| EFO:0004337 | intelligence |
| EFO:0007660 | neuroticism measurement |
| EFO:0009594 | irritability measurement |
| EFO:0009589 | worry measurement |
| EFO:0008579 | risk-taking behaviour |
| EFO:0010091 | tea consumption measurement |
| EFO:0007710 | cognitive decline measurement |
| EFO:0009749 | age at first sexual intercourse measurement |
| EFO:0007788 | BMI-adjusted waist-hip ratio |
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D011225 | Pre-Eclampsia | C12.050.703.395.249 |
| D016649 | Primary Ovarian Insufficiency | C12.050.351.500.056.630.750; C12.100.250.056.630.750; C19.391.630.750 |
| D011471 | Prostatic Neoplasms | C04.588.945.440.770; C12.100.500.260.750; C12.100.500.565.625; C12.200.294.260.750; C12.200.294.565.625; C12.200.758.409.750; C12.900.619.750 |
| C538253 | Amyotrophy, monomelic (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
16 total (human), top 16 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Aflatoxin B1 | decreases methylation, increases methylation | 3 |
| bisphenol S | increases expression, increases methylation | 2 |
| beauvericin | increases expression | 1 |
| pirinixic acid | affects binding, increases activity, increases expression | 1 |
| bisphenol A | increases methylation | 1 |
| sodium arsenite | affects methylation | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| AM 251 | increases expression | 1 |
| incobotulinumtoxinA | decreases expression | 1 |
| Benzo(a)pyrene | affects methylation, decreases methylation | 1 |
| Cadmium | decreases expression, increases abundance | 1 |
| Rotenone | decreases expression | 1 |
| Testosterone | decreases expression | 1 |
| Tretinoin | increases expression | 1 |
| 1-Methyl-4-phenylpyridinium | decreases expression | 1 |
| Cadmium Chloride | decreases expression, increases abundance | 1 |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00117546 | PHASE4 | UNKNOWN | Cardiovascular and Autonomic Reactivity in Women With a History of Pre-eclampsia |
| NCT00567957 | PHASE4 | UNKNOWN | Remifentanil for General Anesthesia in Preeclamptics |
| NCT01030627 | PHASE4 | COMPLETED | Treatment Approaches to Preeclampsia |
| NCT01352234 | PHASE4 | COMPLETED | Comparison of Doses of Acetylsalicylic Acid in Women With Previous History of Preeclampsia |
| NCT01361425 | PHASE4 | UNKNOWN | Anti-Hypertensive Treatment In Stable Pregnant Women With Severe Pre-Eclampsia (Metildopape) |
| NCT01729468 | PHASE4 | COMPLETED | Prevention of Pre-eclampsia and SGA by Low-Dose Aspirin in Nulliparous Women With Abnormal First-trimester Uterine Artery Dopplers |
| NCT01761916 | PHASE4 | COMPLETED | Clonidine Versus Captopril for Treatment of Postpartum Very High Blood Pressure |
| NCT01912677 | PHASE4 | COMPLETED | Oral Antihypertensive Regimens for Management of Hypertension in Pregnancy |
| NCT02025426 | PHASE4 | TERMINATED | Phenylephrine Versus Ephedrine in Pre-eclampsia |
| NCT02091401 | PHASE4 | COMPLETED | A Trial Comparing Treatment With the Springfusor Infusion Pump to the IV Magnesium Sulfate Regimen |
| NCT02163655 | PHASE4 | COMPLETED | Diuretics for Postpartum High Blood Pressure in Preeclampsia |
| NCT02338687 | PHASE4 | COMPLETED | Low Dose Calcium to Prevent Preeclampsia |
| NCT02396030 | PHASE4 | TERMINATED | Different Schemes of Magnesium Sulfate for Preeclampsia |
| NCT02531490 | PHASE4 | UNKNOWN | Early Vascular Adjustments During Hypertensive Pregnancy |
| NCT02699827 | PHASE4 | COMPLETED | Adding MgSO4 to Epidural Levobupivacaine in CS for Patients With Preeclampsia |
| NCT02835339 | PHASE4 | COMPLETED | Magnesium Sulfate in Obese Preeclamptics |
| NCT02891174 | PHASE4 | COMPLETED | The Effect of Ibuprofen on Post-partum Blood Pressure in Women With Hypertensive Disorders of Pregnancy |
| NCT02911701 | PHASE4 | COMPLETED | Effect of Acetaminophen on Postpartum Blood Pressure Control in Preeclampsia With Severe Features |
| NCT03171480 | PHASE4 | COMPLETED | Use of Nitrous Oxide Donor for Labor Induction in Women With PreEclampsia |
| NCT03233880 | PHASE4 | UNKNOWN | Impact of Antichlamydial Treatment on the Rate of Preeclampsia |
| NCT03237000 | PHASE4 | UNKNOWN | Effect of Administering Intravenous Magnesium Sulfate on Fetal Cardiotocography and Neonatal Outcome in Preeclamptic Patients |
| NCT03506724 | PHASE4 | COMPLETED | Response to Anti-hypertensives in Pregnant and Postpartum Patients |
| NCT03674606 | PHASE4 | COMPLETED | Trial of Early Screening Test for Pre-eclampsia and Growth Restriction |
| NCT03735433 | PHASE4 | TERMINATED | The Effect of Two Aspirin Dosing Strategies for Obese Women at High Risk for Preeclampsia |
| NCT03824119 | PHASE4 | UNKNOWN | Postpartum NSAIDS and Maternal Hypertension |
| NCT04051567 | PHASE4 | UNKNOWN | Low-dose Aspirin for Prevention of Adverse Pregnancy Outcomes in Twin Pregnancies |
| NCT04077853 | PHASE4 | COMPLETED | Progesterone in Expectantly Managed Early-onset Preeclampsia |
| NCT04158830 | PHASE4 | WITHDRAWN | Aspirin (ASA) Therapy and Preeclampsia Prevention |
| NCT04424693 | PHASE4 | UNKNOWN | Comparing the Incidence of Preeclampsia Between Pregnant Women Receiving Tdap Vaccinations at Week 28 or at Week 36 |
| NCT04631627 | PHASE4 | UNKNOWN | Early Prediction and Randomised Prevention of Preeclampsia With Low Dose Aspirin in Chinese Cohort |
| NCT04656665 | PHASE4 | UNKNOWN | The Effectiveness of Aspirin on Preventing Pre-eclampsia |
| NCT04797949 | PHASE4 | WITHDRAWN | Adherence to Universal Aspirin Compared to Screening Indicated Aspirin for Prevention of Preeclampsia |
| NCT04908982 | PHASE4 | UNKNOWN | Aspirin for the Prevention of Preeclampsia in Women With Stage 1 Hypertension |
| NCT05221164 | PHASE4 | UNKNOWN | 162 mg of Aspirin for Prevention of Preeclampsia |
| NCT05294952 | PHASE4 | UNKNOWN | co Ihibtory Receptor in Preeclampsia |
| NCT05514847 | PHASE4 | ACTIVE_NOT_RECRUITING | Low Dose Aspirin for Preterm Preeclampsia Preventionmg/day Dose in High-risk Patients |
| NCT05586373 | PHASE4 | COMPLETED | Ibuprofen vs Dipyrone After C-section in Preeclampsia |
| NCT06069102 | PHASE4 | COMPLETED | Optimal Blood Pressure Treatment Thresholds Postpartum |
| NCT06107335 | PHASE4 | NOT_YET_RECRUITING | Effect of Albumin Versus Routine Care on Hemodynamic Response and Stability in Patients With Preeclampsia Guided by a Non-invasive Hemodynamic Monitoring System During Cesarean Delivery With Spinal Anesthesia |
| NCT06281665 | PHASE4 | RECRUITING | Treatment With Aspirin After Preeclampsia: TAP Trial |
Related Atlas pages
- Associated diseases: amyotrophic lateral sclerosis
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): monomelic amyotrophy, preeclampsia, primary ovarian failure