ARRDC4
gene geneOn this page
Also known as FLJ36045
Summary
ARRDC4 (arrestin domain containing 4, HGNC:28087) is a protein-coding gene on chromosome 15q26.2, encoding Arrestin domain-containing protein 4 (Q8NCT1). Functions as an adapter recruiting ubiquitin-protein ligases to their specific substrates.
Enables ubiquitin-like ligase-substrate adaptor activity. Involved in positive regulation of interferon-beta production and protein K63-linked ubiquitination. Acts upstream of or within positive regulation of ubiquitin-protein transferase activity. Located in endosome and plasma membrane.
Source: NCBI Gene 91947 — RefSeq curated summary.
At a glance
- GWAS associations: 4
- Clinical variants (ClinVar): 92 total — 1 pathogenic
- MANE Select transcript:
NM_183376
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:28087 |
| Approved symbol | ARRDC4 |
| Name | arrestin domain containing 4 |
| Location | 15q26.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ36045 |
| Ensembl gene | ENSG00000140450 |
| Ensembl biotype | protein_coding |
| OMIM | 619788 |
| Entrez | 91947 |
Gene structure
Transcript identifiers
Ensembl transcripts: 5 — 5 protein_coding
ENST00000268042, ENST00000885035, ENST00000885036, ENST00000885037, ENST00000946276
RefSeq mRNA: 1 — MANE Select: NM_183376
NM_183376
CCDS: CCDS10377
Canonical transcript exons
ENST00000268042 — 8 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000943113 | 97965895 | 97966042 |
| ENSE00000943114 | 97968014 | 97968116 |
| ENSE00000943115 | 97969123 | 97969379 |
| ENSE00000943116 | 97969883 | 97970045 |
| ENSE00001163990 | 97970589 | 97970743 |
| ENSE00001280411 | 97965600 | 97965666 |
| ENSE00001280442 | 97960703 | 97961168 |
| ENSE00001365782 | 97971131 | 97973833 |
Expression profiles
Bgee: expression breadth ubiquitous, 255 present calls, max score 97.61.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 19.1661 / max 338.8246, expressed in 1670 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 148787 | 19.1661 | 1670 |
Top tissues by expression
261 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| upper leg skin | UBERON:0004262 | 97.61 | gold quality |
| upper arm skin | UBERON:0004263 | 97.04 | gold quality |
| skin of hip | UBERON:0001554 | 96.79 | gold quality |
| ileal mucosa | UBERON:0000331 | 96.23 | gold quality |
| spinal cord | UBERON:0002240 | 95.51 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 95.34 | gold quality |
| decidua | UBERON:0002450 | 95.24 | gold quality |
| kidney epithelium | UBERON:0004819 | 95.23 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 95.22 | gold quality |
| colonic mucosa | UBERON:0000317 | 94.45 | gold quality |
| corpus callosum | UBERON:0002336 | 94.13 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 94.12 | gold quality |
| cardia of stomach | UBERON:0001162 | 93.38 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 93.03 | gold quality |
| nipple | UBERON:0002030 | 92.70 | gold quality |
| cauda epididymis | UBERON:0004360 | 92.67 | gold quality |
| amniotic fluid | UBERON:0000173 | 92.60 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 92.44 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 92.42 | gold quality |
| caput epididymis | UBERON:0004358 | 92.20 | gold quality |
| colon | UBERON:0001155 | 91.74 | gold quality |
| parietal pleura | UBERON:0002400 | 91.66 | gold quality |
| right uterine tube | UBERON:0001302 | 91.60 | gold quality |
| large intestine | UBERON:0000059 | 91.59 | gold quality |
| transverse colon | UBERON:0001157 | 91.29 | gold quality |
| tibialis anterior | UBERON:0001385 | 91.23 | gold quality |
| medulla oblongata | UBERON:0001896 | 90.90 | gold quality |
| intestine | UBERON:0000160 | 90.61 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 90.56 | gold quality |
| lower esophagus | UBERON:0013473 | 90.53 | gold quality |
Single-cell (SCXA)
Detected in 5 experiment(s), a significant marker in 4.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-81608 | yes | 427.94 |
| E-GEOD-83139 | yes | 318.61 |
| E-ENAD-27 | yes | 8.94 |
| E-ANND-3 | yes | 4.44 |
| E-GEOD-75367 | no | 1693.80 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): GATA2
miRNA regulators (miRDB)
196 targeting ARRDC4, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-6759-5P | 99.99 | 66.54 | 785 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
| HSA-MIR-363-3P | 99.98 | 74.72 | 1821 |
| HSA-MIR-367-3P | 99.98 | 74.83 | 1819 |
| HSA-LET-7A-5P | 99.98 | 72.29 | 1790 |
Literature-anchored findings (GeneRIF, showing 4)
- identification of variants in the ARRDC4 coding region; seven variants were identified; fifteen haplotypes were inferred; haplotypes form two clades (PMID:18307387)
- Txnip regulates cellular metabolism independent of its binding to thioredoxin and the arrestin domains are crucial structural elements in metabolic functions of alpha-arrestin proteins (PMID:19605364)
- data highlight new function of ARRDC4 in innate immunity, contributing to the better understanding about regulation of MDA5 activation after EV71 infection, and also suggest ARRDC4 may serve as a potential target for intervention of EV71-induced inflammatory response. (PMID:28594402)
- Identification of HDAC9 and ARRDC4 as potential biomarkers and targets for treatment of type 2 diabetes. (PMID:38528189)
Cross-species orthologs
13 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Arrdc4 | ENSMUSG00000042659 |
| rattus_norvegicus | Arrdc4 | ENSRNOG00000010775 |
| caenorhabditis_elegans | WBGENE00008843 | |
| caenorhabditis_elegans | WBGENE00009852 | |
| caenorhabditis_elegans | WBGENE00011052 | |
| caenorhabditis_elegans | WBGENE00011053 | |
| caenorhabditis_elegans | WBGENE00011054 | |
| caenorhabditis_elegans | WBGENE00012464 | |
| caenorhabditis_elegans | WBGENE00013043 | |
| caenorhabditis_elegans | WBGENE00014161 | |
| caenorhabditis_elegans | WBGENE00018060 | |
| caenorhabditis_elegans | WBGENE00018061 | |
| caenorhabditis_elegans | WBGENE00020612 |
Paralogs (5): ARRDC2 (ENSG00000105643), ARRDC3 (ENSG00000113369), ARRDC1 (ENSG00000197070), ARRDC5 (ENSG00000205784), TXNIP (ENSG00000265972)
Protein
Protein identifiers
Arrestin domain-containing protein 4 — Q8NCT1 (reviewed: Q8NCT1)
All UniProt accessions (1): Q8NCT1
UniProt curated annotations — full annotation on UniProt →
Function. Functions as an adapter recruiting ubiquitin-protein ligases to their specific substrates. Plays a role in endocytosis of activated G protein-coupled receptors (GPCRs). Through an ubiquitination-dependent mechanism also plays a role in the incorporation of SLC11A2 into extracellular vesicles. May play a role in glucose uptake. Participates in innate immune response by promoting IFIH1/MDA5 activation through interaction with TRIM65.
Subunit / interactions. Interacts with ADRB2. Interacts (via PPxY motifs) with ITCH, NEDD4L and WWP2. Interacts with AVPR2. Identified in a complex containing at least ARRDC4, AVPR2 and HGS. Interacts with SLC11A2; controls the incorporation of SLC11A2 into extracellular vesicles through an ubiquitination-dependent mechanism. Interacts with TRIM65.
Subcellular location. Early endosome. Cell membrane. Cytoplasmic vesicle.
Similarity. Belongs to the arrestin family.
RefSeq proteins (1): NP_899232* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR011021 | Arrestin-like_N | Domain |
| IPR011022 | Arrestin-like_C | Domain |
| IPR014752 | Arrestin-like_C_sf | Homologous_superfamily |
| IPR014756 | Ig_E-set | Homologous_superfamily |
| IPR050357 | Arrestin_domain-protein | Family |
Pfam: PF00339, PF02752
UniProt features (6 total): sequence variant 3, short sequence motif 2, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8NCT1-F1 | 80.38 | 0.55 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 255 (showing top):
GSE37336_LY6C_POS_VS_NEG_NAIVE_CD4_TCELL_UP, TGGTGCT_MIR29A_MIR29B_MIR29C, GOBP_POSITIVE_REGULATION_OF_TYPE_I_INTERFERON_PRODUCTION, GOBP_REGULATION_OF_TRANSFERASE_ACTIVITY, GOBP_POSITIVE_REGULATION_OF_CYTOKINE_PRODUCTION, HERNANDEZ_MITOTIC_ARREST_BY_DOCETAXEL_2_UP, GOBP_POSITIVE_REGULATION_OF_CATALYTIC_ACTIVITY, GOBP_POSITIVE_REGULATION_OF_MOLECULAR_FUNCTION, RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_POORLY_DN, MARTINEZ_RB1_TARGETS_DN, GOBP_POSITIVE_REGULATION_OF_INTERFERON_BETA_PRODUCTION, ROZANOV_MMP14_TARGETS_UP, GOBP_CYTOKINE_PRODUCTION, WTGAAAT_UNKNOWN, NIKOLSKY_BREAST_CANCER_15Q26_AMPLICON
GO Biological Process (6): protein transport (GO:0015031), protein ubiquitination (GO:0016567), positive regulation of interferon-beta production (GO:0032728), positive regulation of ubiquitin-protein transferase activity (GO:0051443), protein K63-linked ubiquitination (GO:0070534), extracellular vesicle biogenesis (GO:0140112)
GO Molecular Function (2): ubiquitin-like ligase-substrate adaptor activity (GO:1990756), protein binding (GO:0005515)
GO Cellular Component (7): cytoplasm (GO:0005737), endosome (GO:0005768), early endosome (GO:0005769), plasma membrane (GO:0005886), extracellular vesicle (GO:1903561), membrane (GO:0016020), cytoplasmic vesicle (GO:0031410)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| transport | 1 |
| intracellular protein localization | 1 |
| establishment of protein localization | 1 |
| protein modification by small protein conjugation | 1 |
| positive regulation of type I interferon production | 1 |
| interferon-beta production | 1 |
| regulation of interferon-beta production | 1 |
| ubiquitin-protein transferase activity | 1 |
| positive regulation of protein ubiquitination | 1 |
| positive regulation of catalytic activity | 1 |
| regulation of ubiquitin-protein transferase activity | 1 |
| protein polyubiquitination | 1 |
| cellular component biogenesis | 1 |
| enzyme-substrate adaptor activity | 1 |
| binding | 1 |
| intracellular anatomical structure | 1 |
| endomembrane system | 1 |
| cytoplasmic vesicle | 1 |
| endosome | 1 |
| membrane | 1 |
| cell periphery | 1 |
| extracellular region | 1 |
| vesicle | 1 |
| extracellular membrane-bounded organelle | 1 |
| cytoplasm | 1 |
| intracellular vesicle | 1 |
Protein interactions and networks
STRING
778 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ARRDC4 | MLXIP | Q9HAP2 | 659 |
| ARRDC4 | TRIM65 | Q6PJ69 | 585 |
| ARRDC4 | IFIH1 | Q9BYX4 | 527 |
| ARRDC4 | SAG | P10523 | 520 |
| ARRDC4 | TRAPPC2L | Q9UL33 | 447 |
| ARRDC4 | PGPEP1L | A6NFU8 | 441 |
| ARRDC4 | WWP1 | Q9H0M0 | 405 |
| ARRDC4 | IAPP | P10997 | 401 |
| ARRDC4 | NEDD4 | P46934 | 401 |
| ARRDC4 | TMEM132B | Q14DG7 | 401 |
| ARRDC4 | ERO1B | Q86YB8 | 385 |
| ARRDC4 | DNAJB5 | O75953 | 383 |
| ARRDC4 | ENO4 | A6NNW6 | 381 |
| ARRDC4 | WWP2 | O00308 | 379 |
| ARRDC4 | TXN2 | Q99757 | 375 |
| ARRDC4 | FOXO1 | Q12778 | 375 |
IntAct
7 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ARRDC4 | WWP2 | psi-mi:“MI:0914”(association) | 0.530 |
| ARRDC4 | AVPR2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| WWP1 | TP73 | psi-mi:“MI:0914”(association) | 0.350 |
| SLC2A3 | NRP2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (92): ADRB2 (Affinity Capture-Western), ARRDC4 (Affinity Capture-Western), AVPR2 (Affinity Capture-Western), ARRDC4 (Affinity Capture-Western), IFIH1 (Affinity Capture-Western), ARRDC4 (Affinity Capture-Western), TRIM65 (Affinity Capture-Western), ARRDC4 (Affinity Capture-MS), ARRDC4 (Affinity Capture-MS), XPOT (Affinity Capture-MS), PSMD13 (Affinity Capture-MS), ANKRD13A (Affinity Capture-MS), NDFIP1 (Affinity Capture-MS), SVIL (Affinity Capture-MS), PJA2 (Affinity Capture-MS)
ESM2 similar proteins: A0A0B4J1F4, A0A0G2JXN2, A2AWP8, A2RRH5, C9J798, O43374, O70277, O95294, P04629, P59926, Q0GA42, Q13368, Q14318, Q16512, Q29RM4, Q2HY40, Q2T9P3, Q2TBA3, Q5BIM1, Q5M7W1, Q5R5M3, Q5R811, Q5T7P8, Q5XIS9, Q62746, Q6PFQ7, Q6PFY8, Q7TNM2, Q7TP90, Q7Z4K8, Q8BG60, Q8BHT7, Q8BQC3, Q8C6N3, Q8CIW5, Q8IZ69, Q8NCT1, Q920N2, Q92546, Q925B4
Diamond homologs: A0A0B4J1F4, Q0VCA2, Q2HY40, Q5M7W1, Q5R5L7, Q5R811, Q6TXF1, Q7TP90, Q7TPQ9, Q8BG60, Q8NCT1, Q8TBH0, Q96B67, Q9D668, Q9H3M7, O45782, Q99KN1, B0BNL6, Q8N5I2, Q02805
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
92 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 70 |
| Likely benign | 2 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 395722 | GRCh37/hg19 15q26.2-26.3(chr15:95202449-98779894) | Pathogenic |
SpliceAI
733 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 15:97965665:GA:G | donor_gain | 1.0000 |
| 15:97965667:G:GG | donor_gain | 1.0000 |
| 15:97965886:T:A | acceptor_gain | 1.0000 |
| 15:97965892:CA:C | acceptor_loss | 1.0000 |
| 15:97965893:A:AG | acceptor_gain | 1.0000 |
| 15:97965893:AGACC:A | acceptor_loss | 1.0000 |
| 15:97965894:G:GA | acceptor_gain | 1.0000 |
| 15:97965894:GA:G | acceptor_gain | 1.0000 |
| 15:97965894:GAC:G | acceptor_gain | 1.0000 |
| 15:97965894:GACC:G | acceptor_gain | 1.0000 |
| 15:97965894:GACCT:G | acceptor_gain | 1.0000 |
| 15:97966038:TATTA:T | donor_gain | 1.0000 |
| 15:97966039:ATTA:A | donor_gain | 1.0000 |
| 15:97966040:TTA:T | donor_gain | 1.0000 |
| 15:97966041:TA:T | donor_gain | 1.0000 |
| 15:97966042:AG:A | donor_loss | 1.0000 |
| 15:97966043:G:GG | donor_gain | 1.0000 |
| 15:97966044:T:G | donor_loss | 1.0000 |
| 15:97968001:T:TA | acceptor_gain | 1.0000 |
| 15:97968011:A:AG | acceptor_gain | 1.0000 |
| 15:97968012:A:AG | acceptor_gain | 1.0000 |
| 15:97968013:G:GG | acceptor_gain | 1.0000 |
| 15:97969118:TTTA:T | acceptor_loss | 1.0000 |
| 15:97969120:TA:T | acceptor_loss | 1.0000 |
| 15:97969121:A:AG | acceptor_gain | 1.0000 |
| 15:97969121:A:AT | acceptor_loss | 1.0000 |
| 15:97969122:G:GT | acceptor_gain | 1.0000 |
| 15:97969122:GGA:G | acceptor_gain | 1.0000 |
| 15:97969122:GGAGA:G | acceptor_gain | 1.0000 |
| 15:97969375:TAGCT:T | donor_gain | 1.0000 |
AlphaMissense
2700 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 15:97968075:T:A | V195D | 1.000 |
| 15:97969157:T:A | N220K | 1.000 |
| 15:97969157:T:G | N220K | 1.000 |
| 15:97969296:T:A | W267R | 1.000 |
| 15:97969296:T:C | W267R | 1.000 |
| 15:97965644:T:C | F118L | 0.999 |
| 15:97965645:T:C | F118S | 0.999 |
| 15:97965646:T:A | F118L | 0.999 |
| 15:97965646:T:G | F118L | 0.999 |
| 15:97965927:G:A | G136E | 0.999 |
| 15:97965938:T:G | Y140D | 0.999 |
| 15:97968087:C:A | A199D | 0.999 |
| 15:97969138:T:A | I214N | 0.999 |
| 15:97969143:G:C | A216P | 0.999 |
| 15:97969144:C:A | A216E | 0.999 |
| 15:97969180:C:A | P228Q | 0.999 |
| 15:97969185:G:C | A230P | 0.999 |
| 15:97969186:C:A | A230D | 0.999 |
| 15:97969188:G:C | A231P | 0.999 |
| 15:97969192:T:A | I232N | 0.999 |
| 15:97969298:G:C | W267C | 0.999 |
| 15:97969298:G:T | W267C | 0.999 |
| 15:97960980:G:A | G40E | 0.998 |
| 15:97965651:T:C | F120S | 0.998 |
| 15:97965911:T:C | F131L | 0.998 |
| 15:97965913:T:A | F131L | 0.998 |
| 15:97965913:T:G | F131L | 0.998 |
| 15:97965939:A:C | Y140S | 0.998 |
| 15:97968081:T:C | L197P | 0.998 |
| 15:97968104:G:A | G205R | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000098529 (15:97968961 G>C), RS1000359411 (15:97966661 A>G), RS1000711304 (15:97965424 GAC>G,GACAC,GACACAC,GACACACAC), RS1000797766 (15:97963437 T>A), RS1001107014 (15:97970378 T>C), RS1001227368 (15:97968536 C>A), RS1001523307 (15:97960494 A>G), RS1001558092 (15:97970658 C>G,T), RS1002016975 (15:97962988 T>A,C), RS1002261569 (15:97959320 T>C), RS1002316302 (15:97970511 T>G), RS1002428679 (15:97964260 C>T), RS1002451286 (15:97963348 A>G), RS1002680994 (15:97960733 C>G,T), RS1002902952 (15:97966843 T>C)
Disease associations
OMIM: gene MIM:619788 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): breast ductal adenocarcinoma (MONDO:0005590)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001343_13 | Fat distribution (HIV) | 8.000000e-07 |
| GCST004569_2 | Neuroticism | 1.000000e-06 |
| GCST009276_8 | Response to placebo treatment in childhood asthma (FVC change) | 7.000000e-06 |
| GCST011696_10 | Alzheimer’s disease | 2.000000e-09 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004341 | body fat distribution |
| EFO:0008344 | response to placebo |
| EFO:0010339 | FVC change measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D018270 | Carcinoma, Ductal, Breast | C04.557.470.200.025.232.500; C04.557.470.615.132.500; C04.588.180.390; C17.800.090.500.390 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
84 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases expression, affects cotreatment, increases abundance, increases expression | 5 |
| Valproic Acid | affects expression, increases expression | 5 |
| Benzo(a)pyrene | increases expression | 4 |
| Cyclosporine | increases expression | 4 |
| Cadmium Chloride | decreases expression, increases abundance, increases expression | 4 |
| (+)-JQ1 compound | decreases expression, increases expression | 3 |
| Air Pollutants | decreases expression, increases abundance, increases expression | 3 |
| Cisplatin | affects cotreatment, decreases expression, increases expression | 3 |
| Estradiol | increases expression | 3 |
| Aflatoxin B1 | increases expression, affects expression, decreases expression, decreases methylation | 3 |
| methylmercuric chloride | decreases expression | 2 |
| S-(1,2-dichlorovinyl)cysteine | affects cotreatment, increases expression, decreases expression | 2 |
| entinostat | affects cotreatment, decreases expression | 2 |
| Acetaminophen | decreases expression, increases expression | 2 |
| Rotenone | decreases expression | 2 |
| Silicon Dioxide | decreases expression, increases expression | 2 |
| Particulate Matter | increases abundance, increases expression, decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| 3-((6-(2-methoxyphenyl)pyrimidin-4-yl)amino)phenyl)methane sulfonamide | decreases expression | 1 |
| OTX015 | increases expression | 1 |
| mivebresib | increases expression | 1 |
| Esketamine | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| pirinixic acid | affects binding, increases activity, increases expression | 1 |
| lead acetate | increases expression | 1 |
| trichostatin A | increases expression | 1 |
| thallium sulfate | decreases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| cobaltous chloride | increases expression | 1 |
| butyraldehyde | increases expression | 1 |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_F1P1 | HyCyte HCT 116 KO-hARRDC4 | Cancer cell line | Male |
Clinical trials (associated diseases)
11 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT03414970 | PHASE3 | ACTIVE_NOT_RECRUITING | Hypofractionated Radiation Therapy After Mastectomy in Preventing Recurrence in Patients With Stage IIa-IIIa Breast Cancer |
| NCT00461344 | PHASE2 | TERMINATED | Docetaxel + Doxorubicin as Neoadjuvant Chemotherapy in Patients With Breast Cancer |
| NCT07499999 | PHASE2 | NOT_YET_RECRUITING | Randomized Double-Blind Phase II Trial of Baby Exemestane Versus Baby Tamoxifen in Post-Menopausal Women at High Risk for Breast Cancer |
| NCT00637364 | PHASE1/PHASE2 | SUSPENDED | High Intensity Focused Ultrasound Tumor Treatment for Pancreatic Cancer Pain |
| NCT02779855 | PHASE1/PHASE2 | COMPLETED | Talimogene Laherparepvec in Combination With Neoadjuvant Chemotherapy in Triple Negative Breast Cancer |
| NCT01753908 | EARLY_PHASE1 | COMPLETED | Broccoli Sprout Extract in Treating Patients With Breast Cancer |
| NCT01796041 | EARLY_PHASE1 | COMPLETED | Intraoperative Imaging of Breast Cancer With Indocyanine Green |
| NCT01208974 | Not specified | ACTIVE_NOT_RECRUITING | Nipple-Areola Complex (NAC) Irradiation After Nipple-Sparing Mastectomy and Reconstruction |
| NCT01875198 | Not specified | TERMINATED | Oncologic Impact of Splenectomy-omitting Radical Pancreatectomy in Well-selected Left-sided Pancreatic Cancer |
| NCT03543397 | Not specified | UNKNOWN | MRI in Ductal Carcinoma in Situ (DCIS) |
| NCT03834532 | Not specified | COMPLETED | Living Well After Breast Surgery |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): neurotic disorder