ARSI
gene geneOn this page
Also known as FLJ16069SPG66
Summary
ARSI (arylsulfatase family member I, HGNC:32521) is a protein-coding gene on chromosome 5q32, encoding Arylsulfatase I (Q5FYB1). Displays arylsulfatase activity at neutral pH, when co-expressed with SUMF1; arylsulfatase activity is measured in the secretion medium of retinal cell line, but no activity is recorded when measured in cell extracts.
This gene encodes a protein that belongs to a large family of sulfatases that hydrolyze sulfate esters and sulfamates. Members of this family play a role in several cellular processes, including hormone synthesis, cell signaling in development and degradation of macromolecules. The protein encoded by this gene is thought to be secreted, and to function in extracellular space.
Source: NCBI Gene 340075 — RefSeq curated summary.
At a glance
- Gene–disease (curated): autosomal recessive spastic paraplegia type 66 (Supportive, GenCC)
- GWAS associations: 2
- Clinical variants (ClinVar): 194 total
- Phenotypes (HPO): 14
- MANE Select transcript:
NM_001012301
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:32521 |
| Approved symbol | ARSI |
| Name | arylsulfatase family member I |
| Location | 5q32 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ16069, SPG66 |
| Ensembl gene | ENSG00000183876 |
| Ensembl biotype | protein_coding |
| OMIM | 610009 |
| Entrez | 340075 |
Gene structure
Transcript identifiers
Ensembl transcripts: 3 — 3 protein_coding
ENST00000328668, ENST00000509146, ENST00000515301
RefSeq mRNA: 1 — MANE Select: NM_001012301
NM_001012301
CCDS: CCDS34275
Canonical transcript exons
ENST00000328668 — 2 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001310797 | 150302063 | 150302905 |
| ENSE00001328397 | 150296343 | 150298612 |
Expression profiles
Bgee: expression breadth ubiquitous, 155 present calls, max score 80.25.
FANTOM5 (CAGE): breadth broad, TPM avg 2.7807 / max 205.3345, expressed in 687 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 64211 | 1.8188 | 594 |
| 64210 | 0.4174 | 214 |
| 64209 | 0.2251 | 78 |
| 203739 | 0.1862 | 113 |
| 64208 | 0.1332 | 76 |
Top tissues by expression
250 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| stromal cell of endometrium | CL:0002255 | 80.25 | gold quality |
| tibia | UBERON:0000979 | 79.46 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 75.11 | gold quality |
| cartilage tissue | UBERON:0002418 | 74.19 | gold quality |
| gingival epithelium | UBERON:0001949 | 73.19 | silver quality |
| gingiva | UBERON:0001828 | 71.45 | silver quality |
| endothelial cell | CL:0000115 | 70.89 | gold quality |
| placenta | UBERON:0001987 | 70.28 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 69.46 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 69.29 | gold quality |
| left uterine tube | UBERON:0001303 | 68.50 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 68.39 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 68.35 | gold quality |
| lower esophagus | UBERON:0013473 | 68.33 | gold quality |
| vermiform appendix | UBERON:0001154 | 67.64 | gold quality |
| ectocervix | UBERON:0012249 | 67.36 | gold quality |
| spinal cord | UBERON:0002240 | 66.82 | gold quality |
| upper lobe of lung | UBERON:0008948 | 66.64 | gold quality |
| tibial nerve | UBERON:0001323 | 66.55 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 64.96 | gold quality |
| body of uterus | UBERON:0009853 | 64.95 | gold quality |
| esophagus | UBERON:0001043 | 64.87 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 64.21 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 63.45 | gold quality |
| urinary bladder | UBERON:0001255 | 63.20 | gold quality |
| islet of Langerhans | UBERON:0000006 | 62.63 | gold quality |
| parotid gland | UBERON:0001831 | 62.41 | gold quality |
| esophagus mucosa | UBERON:0002469 | 62.27 | gold quality |
| lung | UBERON:0002048 | 62.10 | gold quality |
| vagina | UBERON:0000996 | 62.02 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 1.10 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): CTCF
miRNA regulators (miRDB)
26 targeting ARSI, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4673 | 100.00 | 66.64 | 1490 |
| HSA-MIR-4534 | 99.99 | 66.58 | 1907 |
| HSA-MIR-4725-3P | 99.96 | 69.53 | 2520 |
| HSA-MIR-6780B-5P | 99.96 | 69.60 | 2562 |
| HSA-MIR-8082 | 99.95 | 67.27 | 1170 |
| HSA-MIR-4271 | 99.88 | 68.32 | 2244 |
| HSA-MIR-370-5P | 99.78 | 66.81 | 706 |
| HSA-MIR-4319 | 99.76 | 69.83 | 2586 |
| HSA-MIR-92A-2-5P | 99.75 | 67.01 | 2164 |
| HSA-MIR-4649-3P | 99.56 | 66.90 | 1783 |
| HSA-MIR-3612 | 99.45 | 66.02 | 1333 |
| HSA-MIR-125A-5P | 99.36 | 70.59 | 1640 |
| HSA-MIR-125B-5P | 99.36 | 70.36 | 1662 |
| HSA-MIR-491-5P | 99.13 | 65.98 | 1468 |
| HSA-MIR-4695-5P | 99.06 | 64.87 | 1151 |
| HSA-MIR-3922-5P | 98.77 | 66.53 | 1059 |
| HSA-MIR-7113-3P | 98.75 | 65.71 | 1120 |
| HSA-MIR-4640-5P | 97.42 | 66.33 | 1543 |
| HSA-MIR-4726-5P | 97.24 | 65.67 | 1299 |
| HSA-MIR-4286 | 97.20 | 64.37 | 1587 |
| HSA-MIR-874-5P | 96.93 | 63.92 | 1014 |
| HSA-MIR-6861-5P | 96.23 | 67.19 | 800 |
| HSA-MIR-4509 | 96.19 | 65.80 | 900 |
| HSA-MIR-3918 | 96.13 | 64.65 | 1300 |
| HSA-MIR-2114-3P | 95.45 | 66.11 | 579 |
| HSA-MIR-6823-3P | 95.45 | 66.14 | 704 |
Literature-anchored findings (GeneRIF, showing 2)
- The identification, molecular cloning and initial characterization of three new members of this human gene family is reported. (PMID:16500042)
- No mutation was found in the ARSI gene locus of the retinitis pigmentosa patients examined. (PMID:19262745)
Cross-species orthologs
11 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | arsia | ENSDARG00000077606 |
| mus_musculus | Arsi | ENSMUSG00000036412 |
| rattus_norvegicus | Arsi | ENSRNOG00000026060 |
| drosophila_melanogaster | CG18278 | FBGN0033836 |
| drosophila_melanogaster | CG7408 | FBGN0036765 |
| drosophila_melanogaster | CG7402 | FBGN0036768 |
| drosophila_melanogaster | Sulf1 | FBGN0040271 |
| drosophila_melanogaster | CG32191 | FBGN0052191 |
| drosophila_melanogaster | CG30059 | FBGN0260475 |
| caenorhabditis_elegans | WBGENE00006308 | |
| caenorhabditis_elegans | WBGENE00006309 |
Paralogs (16): ARSD (ENSG00000006756), IDS (ENSG00000010404), ARSF (ENSG00000062096), ARSA (ENSG00000100299), STS (ENSG00000101846), ARSB (ENSG00000113273), GNS (ENSG00000135677), SULF1 (ENSG00000137573), GALNS (ENSG00000141012), ARSG (ENSG00000141337), ARSL (ENSG00000157399), ARSK (ENSG00000164291), ARSJ (ENSG00000180801), SGSH (ENSG00000181523), SULF2 (ENSG00000196562), ARSH (ENSG00000205667)
Protein
Protein identifiers
Arylsulfatase I — Q5FYB1 (reviewed: Q5FYB1)
All UniProt accessions (2): Q5FYB1, D6RDH0
UniProt curated annotations — full annotation on UniProt →
Function. Displays arylsulfatase activity at neutral pH, when co-expressed with SUMF1; arylsulfatase activity is measured in the secretion medium of retinal cell line, but no activity is recorded when measured in cell extracts. Lacks arylsulfatase activity.
Subcellular location. Secreted. Endoplasmic reticulum.
Tissue specificity. Expressed in placenta, in embryonic stem cells, fetal eyes and lens.
Post-translational modifications. The oxidation of Cys-93 residue to 3-oxoalanine (also known as C(alpha)-formylglycine) by SUMF1/Sulfatase-modifying factor 1, seems critical for catalytic activity.
Cofactor. Binds 1 Ca(2+) ion per subunit.
Similarity. Belongs to the sulfatase family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q5FYB1-1 | 1 | yes |
| Q5FYB1-2 | 2 |
RefSeq proteins (1): NP_001012301* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000917 | Sulfatase_N | Domain |
| IPR017850 | Alkaline_phosphatase_core_sf | Homologous_superfamily |
| IPR024607 | Sulfatase_CS | Conserved_site |
| IPR047115 | ARSB | Family |
Pfam: PF00884
UniProt features (22 total): binding site 8, glycosylation site 4, sequence conflict 2, active site 2, signal peptide 1, chain 1, modified residue 1, splice variant 1, mutagenesis site 1, region of interest 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q5FYB1-F1 | 87.35 | 0.77 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (2): 93 (nucleophile); 149
Ligand- & substrate-binding residues (8): 297; 298; 315; 55; 56; 93 (via 3-oxoalanine); 147; 239
Post-translational modifications (1): 93
Glycosylation sites (4): 276, 288, 466, 496
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 93 | no arylsulfatase activity in the media of retinal epithelium cell. |
Function
Pathways and Gene Ontology
Reactome pathways
9 pathways
| ID | Pathway |
|---|---|
| R-HSA-1663150 | The activation of arylsulfatases |
| R-HSA-9840310 | Glycosphingolipid catabolism |
| R-HSA-1430728 | Metabolism |
| R-HSA-163841 | Gamma carboxylation, hypusinylation, hydroxylation, and arylsulfatase activation |
| R-HSA-1660662 | Glycosphingolipid metabolism |
| R-HSA-392499 | Metabolism of proteins |
| R-HSA-428157 | Sphingolipid metabolism |
| R-HSA-556833 | Metabolism of lipids |
| R-HSA-597592 | Post-translational protein modification |
MSigDB gene sets: 92 (showing top):
REACTOME_SPHINGOLIPID_METABOLISM, chr5q32, GOCC_ENDOPLASMIC_RETICULUM_LUMEN, GOMF_HYDROLASE_ACTIVITY_ACTING_ON_ESTER_BONDS, GOMF_SULFURIC_ESTER_HYDROLASE_ACTIVITY, GOMF_ARYLSULFATASE_ACTIVITY, MEISSNER_NPC_HCP_WITH_H3_UNMETHYLATED, REACTOME_POST_TRANSLATIONAL_PROTEIN_MODIFICATION, MARTENS_TRETINOIN_RESPONSE_UP, LIM_MAMMARY_STEM_CELL_UP, ZWANG_CLASS_1_TRANSIENTLY_INDUCED_BY_EGF, REACTOME_GAMMA_CARBOXYLATION_HYPUSINYLATION_HYDROXYLATION_AND_ARYLSULFATASE_ACTIVATION, REACTOME_METABOLISM_OF_LIPIDS, ZNF92_TARGET_GENES, MIR6780B_5P
GO Biological Process (0):
GO Molecular Function (5): arylsulfatase activity (GO:0004065), sulfuric ester hydrolase activity (GO:0008484), metal ion binding (GO:0046872), protein binding (GO:0005515), hydrolase activity (GO:0016787)
GO Cellular Component (3): extracellular region (GO:0005576), endoplasmic reticulum lumen (GO:0005788), endoplasmic reticulum (GO:0005783)
Reactome top-level categories
Rollup of top-7 pathways:
| Category | Pathways |
|---|---|
| Gamma carboxylation, hypusinylation, hydroxylation, and arylsulfatase activation | 1 |
| Glycosphingolipid metabolism | 1 |
| Post-translational protein modification | 1 |
| Sphingolipid metabolism | 1 |
| Metabolism of lipids | 1 |
| Metabolism | 1 |
| Metabolism of proteins | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| sulfuric ester hydrolase activity | 1 |
| hydrolase activity, acting on ester bonds | 1 |
| cation binding | 1 |
| binding | 1 |
| catalytic activity | 1 |
| cellular anatomical structure | 1 |
| endoplasmic reticulum | 1 |
| intracellular organelle lumen | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
784 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ARSI | ARSK | Q6UWY0 | 728 |
| ARSI | SPG21 | Q9NZD8 | 478 |
| ARSI | AP4B1 | Q9Y6B7 | 478 |
| ARSI | AP5Z1 | O43299 | 461 |
| ARSI | AP4S1 | Q9Y587 | 450 |
| ARSI | AR | P10275 | 448 |
| ARSI | AP4E1 | Q9UPM8 | 435 |
| ARSI | VPS37A | Q8NEZ2 | 435 |
| ARSI | C19orf12 | Q9NSK7 | 434 |
| ARSI | REEP2 | Q9BRK0 | 430 |
| ARSI | ARL6IP1 | Q15041 | 426 |
| ARSI | MTRFR | Q9H3J6 | 422 |
| ARSI | PGAP1 | Q75T13 | 419 |
| ARSI | TECPR2 | O15040 | 418 |
| ARSI | AP4M1 | O00189 | 416 |
| ARSI | DDHD2 | O94830 | 416 |
IntAct
6 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| KRT40 | ARSI | psi-mi:“MI:0915”(physical association) | 0.560 |
| ARSI | KRT40 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ARSI | HSPA5 | psi-mi:“MI:0914”(association) | 0.530 |
| ARSI | FBXO21 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (8): ARSI (Two-hybrid), NOL11 (Affinity Capture-MS), AHCYL2 (Affinity Capture-MS), HSPA5 (Affinity Capture-MS), FBXO21 (Affinity Capture-MS), AHCYL2 (Affinity Capture-MS), NOL11 (Affinity Capture-MS), HSPA5 (Affinity Capture-MS)
ESM2 similar proteins: A2AIR5, A5PK45, F1PZV2, O00222, O09009, O15303, O15399, O60391, O97583, P31423, P35349, P52849, P52850, P70579, Q00961, Q01098, Q03391, Q13467, Q14833, Q14957, Q1ZZH0, Q32KH7, Q32KI9, Q32KJ8, Q3U481, Q5FYB1, Q5NCH9, Q5RDQ8, Q61088, Q62645, Q68EF4, Q6PCB7, Q863I4, Q8CHL0, Q8K078, Q8K297, Q8NBJ5, Q8TCU5, Q8VHN2, Q91ZU9
Diamond homologs: P08842, P14000, P15289, P15589, P20713, P22304, P31447, P34059, P50427, P50428, P50473, P51689, P51690, P54793, Q08890, Q08DD1, Q32KH5, Q32KH8, Q32KH9, Q32KI9, Q32KJ6, Q32KJ8, Q32KJ9, Q3TYD4, Q571E4, Q5FYA8, Q5FYB1, Q60HH5, Q8WNQ7, Q96EG1, Q9X759, T2KMG4, P15586, P50426, Q5FYB0, Q8A2F6, Q8A2H2, Q8BFR4, Q8BM89, Q8IWU6
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
194 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 139 |
| Likely benign | 35 |
| Benign | 12 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
223 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 5:150298610:TAC:T | acceptor_gain | 1.0000 |
| 5:150298611:AC:A | acceptor_gain | 1.0000 |
| 5:150298612:CCTGG:C | acceptor_gain | 1.0000 |
| 5:150298613:C:CC | acceptor_gain | 1.0000 |
| 5:150298613:CT:C | acceptor_loss | 1.0000 |
| 5:150298616:G:GC | acceptor_gain | 1.0000 |
| 5:150302057:GCCTA:G | donor_loss | 1.0000 |
| 5:150302058:CCTA:C | donor_loss | 1.0000 |
| 5:150302059:CTA:C | donor_loss | 1.0000 |
| 5:150302060:TAC:T | donor_loss | 1.0000 |
| 5:150302061:ACC:A | donor_loss | 1.0000 |
| 5:150298608:GGTAC:G | acceptor_gain | 0.9900 |
| 5:150298609:GTAC:G | acceptor_gain | 0.9900 |
| 5:150302065:G:A | donor_gain | 0.9900 |
| 5:150302127:TG:T | donor_gain | 0.9900 |
| 5:150298616:G:C | acceptor_gain | 0.9800 |
| 5:150298609:GTACC:G | acceptor_gain | 0.9700 |
| 5:150298610:TACCT:T | acceptor_gain | 0.9700 |
| 5:150298611:ACC:A | acceptor_gain | 0.9700 |
| 5:150298612:CCT:C | acceptor_gain | 0.9700 |
| 5:150298613:CTGGT:C | acceptor_gain | 0.9700 |
| 5:150302061:A:AC | donor_gain | 0.9700 |
| 5:150302061:ACCTG:A | donor_gain | 0.9700 |
| 5:150302062:C:CC | donor_gain | 0.9700 |
| 5:150302062:CCTG:C | donor_gain | 0.9700 |
| 5:150302062:CCTGC:C | donor_gain | 0.9700 |
| 5:150298614:T:A | acceptor_gain | 0.9600 |
| 5:150300468:AGGGC:A | donor_gain | 0.9600 |
| 5:150298223:GCCAC:G | acceptor_gain | 0.8800 |
| 5:150298613:C:T | acceptor_gain | 0.8800 |
AlphaMissense
3695 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 5:150298482:A:G | W148R | 1.000 |
| 5:150298482:A:T | W148R | 1.000 |
| 5:150297979:C:A | K315N | 0.999 |
| 5:150297979:C:G | K315N | 0.999 |
| 5:150298028:C:T | G299D | 0.999 |
| 5:150298480:C:A | W148C | 0.999 |
| 5:150298480:C:G | W148C | 0.999 |
| 5:150302210:T:A | D55V | 0.999 |
| 5:150297364:C:A | W520C | 0.998 |
| 5:150297364:C:G | W520C | 0.998 |
| 5:150297647:A:G | L426P | 0.998 |
| 5:150297876:A:G | W350R | 0.998 |
| 5:150297876:A:T | W350R | 0.998 |
| 5:150297938:A:T | V329D | 0.998 |
| 5:150298000:G:C | N308K | 0.998 |
| 5:150298000:G:T | N308K | 0.998 |
| 5:150298028:C:A | G299V | 0.998 |
| 5:150298034:T:A | D297V | 0.998 |
| 5:150298209:G:C | H239D | 0.998 |
| 5:150298432:G:C | F164L | 0.998 |
| 5:150298432:G:T | F164L | 0.998 |
| 5:150298434:A:G | F164L | 0.998 |
| 5:150298448:G:T | P159H | 0.998 |
| 5:150298483:C:A | K147N | 0.998 |
| 5:150298483:C:G | K147N | 0.998 |
| 5:150298487:C:A | G146V | 0.998 |
| 5:150298592:A:G | L111P | 0.998 |
| 5:150302087:G:C | S96W | 0.998 |
| 5:150302095:G:C | C93W | 0.998 |
| 5:150302096:C:T | C93Y | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000655947 (5:150303054 G>A), RS1001246916 (5:150299051 A>T), RS1001418211 (5:150303574 C>T), RS1001491420 (5:150303189 T>C), RS1001650603 (5:150297179 G>C,T), RS1002908904 (5:150296057 C>A,T), RS1002973254 (5:150302288 G>A,T), RS1003404920 (5:150300985 T>C), RS1004570882 (5:150296247 C>T), RS1004664009 (5:150296489 C>T), RS1005023360 (5:150302897 A>G), RS1005328145 (5:150298918 C>G), RS1006033244 (5:150303664 A>C,G), RS1007405064 (5:150297728 G>C,T), RS1007427800 (5:150298223 G>A,C,T)
Disease associations
OMIM: gene MIM:610009 | disease phenotypes: MIM:303350
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| autosomal recessive spastic paraplegia type 66 | Supportive | Autosomal recessive |
Mondo (2): hereditary spastic paraplegia (MONDO:0019064), autosomal recessive spastic paraplegia type 66 (MONDO:0018418)
Orphanet (1): Hereditary spastic paraplegia (Orphanet:685)
HPO phenotypes
14 total (14 of 14 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0001249 | Intellectual disability |
| HP:0001284 | Areflexia |
| HP:0001288 | Gait disturbance |
| HP:0001301 | Chronic sensorineural polyneuropathy |
| HP:0001321 | Cerebellar hypoplasia |
| HP:0001762 | Talipes equinovarus |
| HP:0002061 | Lower limb spasticity |
| HP:0002064 | Spastic gait |
| HP:0002079 | Hypoplasia of the corpus callosum |
| HP:0002166 | Impaired vibration sensation in the lower limbs |
| HP:0002509 | Limb hypertonia |
| HP:0007020 | Progressive spastic paraplegia |
| HP:0007210 | Lower limb amyotrophy |
| HP:0030048 | Colpocephaly |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004735_15 | Epstein-Barr virus copy number in lymphoblastoid cell lines | 7.000000e-06 |
| GCST009391_1519 | Metabolite levels | 9.000000e-07 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0010418 | triacylglycerol 52:6 measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D015419 | Spastic Paraplegia, Hereditary | C10.500.300.820; C10.574.500.495.820; C10.668.829.800.300.820; C16.131.666.300.820; C16.320.400.375.820 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
38 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | increases expression, decreases expression | 2 |
| Valproic Acid | decreases methylation, increases expression | 2 |
| Particulate Matter | increases abundance, increases expression, affects cotreatment | 2 |
| dicrotophos | decreases expression | 1 |
| propionaldehyde | increases expression | 1 |
| butyraldehyde | increases expression | 1 |
| zinc chromate | decreases expression, increases abundance | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| pentanal | increases expression | 1 |
| chromium hexavalent ion | increases abundance, decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| entinostat | increases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Leflunomide | decreases expression | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Aldehydes | increases expression | 1 |
| Arsenicals | increases expression | 1 |
| Benzo(a)pyrene | decreases methylation | 1 |
| Calcitriol | decreases expression | 1 |
| Cisplatin | affects cotreatment, increases expression | 1 |
| Endosulfan | affects cotreatment, increases expression | 1 |
| Estradiol | affects cotreatment, increases expression | 1 |
| Gasoline | affects cotreatment, increases abundance, increases expression | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Polycyclic Aromatic Hydrocarbons | affects cotreatment, increases abundance, increases expression | 1 |
| Silicon Dioxide | increases expression | 1 |
| Silver | decreases expression | 1 |
| Smoke | decreases expression | 1 |
Clinical trials (associated diseases)
51 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT07542548 | PHASE4 | COMPLETED | D-Cycloserine for Serine Palmitoyltransferase Inhibition |
| NCT03961906 | PHASE2 | COMPLETED | Physiotherapy in Hereditary Spastic Paraplegia |
| NCT04768166 | PHASE2 | COMPLETED | Testing Miglustat Administration in Subjects With Spastic Paraplegia 11 |
| NCT06117020 | PHASE1 | COMPLETED | Single and Multiple Ascending Dose Study of MTR-601 in Healthy Individuals |
| NCT02604186 | PHASE2/PHASE3 | COMPLETED | Effects of Botulinum Toxin Injections in Patients With Hereditary Spastic Paraplegia |
| NCT05518188 | PHASE1/PHASE2 | RECRUITING | Melpida: Recombinant Adeno-associated Virus (serotype 9) Encoding a Codon Optimized Human AP4M1 Transgene (hAP4M1opt) |
| NCT06948019 | PHASE1/PHASE2 | NOT_YET_RECRUITING | Safety and Efficacy of AAV9/AP4B1 (BFB-101) For Patients With AP4B1-related Hereditary Spastic Paraplegia Type 47 (SPG47) |
| NCT06478238 | EARLY_PHASE1 | RECRUITING | Calcium Folinate Treatment of Spastic Paraplegia 56 |
| NCT00023075 | Not specified | COMPLETED | Nuclear Magnetic Spectroscopy Imaging to Evaluate Primary Lateral Sclerosis, Hereditary Spastic Paraplegia and Amyotrophic Lateral Sclerosis |
| NCT00136630 | Not specified | COMPLETED | Natural History, Genetic Bases and Phenotype-genotype Correlations in Autosomal Dominant Spinocerebellar Degenerations |
| NCT00140829 | Not specified | COMPLETED | SPATAX: Clinical and Genetic Analysis of Cerebellar Ataxias and Spastic Paraplegias |
| NCT00677768 | Not specified | COMPLETED | Validation of Biomarkers in Amyotrophic Lateral Sclerosis (ALS) |
| NCT01568658 | Not specified | ACTIVE_NOT_RECRUITING | Genetic and Physical Study of Childhood Nerve and Muscle Disorders |
| NCT02327845 | Not specified | ENROLLING_BY_INVITATION | Phenotype, Genotype & Biomarkers in ALS and Related Disorders |
| NCT02852278 | Not specified | COMPLETED | A Patient Centric Motor Neuron Disease Activities of Daily Living Scale |
| NCT02859428 | Not specified | TERMINATED | Disease Natural History and Biomarkers of SPG3A, SPG4A, and SPG31 |
| NCT03104088 | Not specified | COMPLETED | Studying Cognition in SPG4 |
| NCT03206190 | Not specified | RECRUITING | The preSPG4 Study - Studying the Prodromal and Early Phase of SPG4 |
| NCT03627416 | Not specified | COMPLETED | Repetitive Transcranial Magnetic Stimulation as Therapy in Hereditary Spastic Paraplegia and Adrenomyeloneuropathy |
| NCT03981276 | Not specified | RECRUITING | Phenotypes, Biomarkers and Pathophysiology in Hereditary Spastic Paraplegias and Related Disorders |
| NCT04006418 | Not specified | RECRUITING | A Registered Cohort Study on Spastic Paraplegia |
| NCT04180098 | Not specified | COMPLETED | Improving Gait Adaptability in Hereditary Spastic Paraplegia |
| NCT04256681 | Not specified | COMPLETED | SNAP: Measurement of the Subjective Perception of the Symptom in Hereditary Spastic Paraparesis (HSP) |
| NCT04712812 | Not specified | RECRUITING | Registry and Natural History Study for Early Onset Hereditary Spastic Paraplegia |
| NCT04875416 | Not specified | ACTIVE_NOT_RECRUITING | Phenotype, Genotype and Biomarkers 2 |
| NCT04912609 | Not specified | COMPLETED | Trehalose Administration in Subjects With Spastic Paraplegia 11 (3AL-SPG11) |
| NCT05354622 | Not specified | RECRUITING | Hereditary Spastic Paraplegia Genomic Sequencing Initiative (HSPseq) |
| NCT05373082 | Not specified | COMPLETED | Identification of Modifying Factors in Hereditary Spastic Paraplegia |
| NCT05411627 | Not specified | WITHDRAWN | A Pilot Study of Shockwave Therapy in HSP |
| NCT05432999 | Not specified | COMPLETED | Extracorporeal Shockwave Therapy for Spasticity in People With Spinal Cord Injury |
| NCT05613114 | Not specified | COMPLETED | Effect of Dalfampridine in Patients With Hereditary Spastic Paraplegia |
| NCT05767268 | Not specified | COMPLETED | Assessment of the Psychophysical State During Rehabilitation Treatment With Lokomat |
| NCT05848271 | Not specified | RECRUITING | Natural History Study of Patients with HPDL Mutations |
| NCT06156813 | Not specified | RECRUITING | Turkish Lower-Extremity Motor Activity Log (LE-MAL) |
| NCT06229626 | Not specified | RECRUITING | Evaluation of an Intensive Training Program for Patients with Hereditary Spastic Paraparesis SPG4/Spast |
| NCT06260982 | Not specified | UNKNOWN | Cognitive Disorders in Hereditary Spastic Paraplegia Type 4 |
| NCT06553976 | Not specified | RECRUITING | Spastic Paraplegia - Centers of Excellence Research Network |
| NCT06572046 | Not specified | RECRUITING | STOP-HSP.Net: a Registry for Hereditary Spastic Paraplegia as an Integration Tool for Future Therapeutic Strategies |
| NCT06573866 | Not specified | RECRUITING | Enhancement of Quality of Work And Life |
| NCT06680063 | Not specified | COMPLETED | Correlation Between Clinical Assessment and Neurophysiological Assessment in Spinal Cord Injury |
Related Atlas pages
- Associated diseases: autosomal recessive spastic paraplegia type 66
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autosomal recessive spastic paraplegia type 66, Epstein-Barr virus infection, hereditary spastic paraplegia