ARX
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Also known as ISSXCT121EIEE1
Summary
ARX (aristaless related homeobox, HGNC:18060) is a protein-coding gene on chromosome Xp21.3, encoding Homeobox protein ARX (Q96QS3). Transcription factor. It is haploinsufficient (ClinGen: sufficient evidence).
This gene is a homeobox-containing gene expressed during development. The expressed protein contains two conserved domains, a C-peptide (or aristaless domain) and the prd-like class homeobox domain. It is a member of the group-II aristaless-related protein family whose members are expressed primarily in the central and/or peripheral nervous system. This gene is thought to be involved in CNS development. Expansion of a polyalanine tract and other mutations in this gene cause X-linked cognitive disability and epilepsy.
Source: NCBI Gene 170302 — RefSeq curated summary.
At a glance
- Gene–disease (curated): genetic developmental and epileptic encephalopathy (Definitive, ClinGen) — +11 more curated relationships
- Clinical variants (ClinVar): 978 total — 105 pathogenic, 26 likely-pathogenic
- Phenotypes (HPO): 169
- Dosage sensitivity (ClinGen): haploinsufficiency sufficient evidence, triplosensitivity no evidence
- Transcription factor: yes — 30 downstream targets (CollecTRI)
- MANE Select transcript:
NM_139058
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:18060 |
| Approved symbol | ARX |
| Name | aristaless related homeobox |
| Location | Xp21.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ISSX, CT121, EIEE1 |
| Ensembl gene | ENSG00000004848 |
| Ensembl biotype | protein_coding |
| OMIM | 300382 |
| Entrez | 170302 |
Gene structure
Transcript identifiers
Ensembl transcripts: 5 — 3 protein_coding_CDS_not_defined, 2 protein_coding
ENST00000379044, ENST00000636609, ENST00000636885, ENST00000637394, ENST00000637993
RefSeq mRNA: 1 — MANE Select: NM_139058
NM_139058
CCDS: CCDS14215
Canonical transcript exons
ENST00000379044 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001297998 | 25007111 | 25007439 |
| ENSE00001304879 | 25012922 | 25013798 |
| ENSE00001317788 | 25010260 | 25010305 |
| ENSE00001479586 | 25003694 | 25004910 |
| ENSE00001479600 | 25015542 | 25015965 |
Expression profiles
Bgee: expression breadth ubiquitous, 162 present calls, max score 97.34.
FANTOM5 (CAGE): breadth broad, TPM avg 11.1592 / max 773.5224, expressed in 277 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 198760 | 10.9702 | 274 |
| 198759 | 0.1317 | 54 |
| 209636 | 0.0430 | 23 |
| 198761 | 0.0143 | 4 |
Top tissues by expression
249 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| left ovary | UBERON:0002119 | 97.34 | gold quality |
| ovary | UBERON:0000992 | 94.28 | gold quality |
| right ovary | UBERON:0002118 | 93.36 | gold quality |
| ventricular zone | UBERON:0003053 | 93.33 | gold quality |
| vastus lateralis | UBERON:0001379 | 92.69 | silver quality |
| germinal epithelium of ovary | UBERON:0001304 | 92.54 | silver quality |
| quadriceps femoris | UBERON:0001377 | 92.20 | gold quality |
| endothelial cell | CL:0000115 | 90.82 | gold quality |
| bronchial epithelial cell | CL:0002328 | 87.08 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 87.07 | gold quality |
| biceps brachii | UBERON:0001507 | 86.11 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 85.73 | gold quality |
| ganglionic eminence | UBERON:0004023 | 85.68 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 85.46 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 85.13 | gold quality |
| bronchus | UBERON:0002185 | 85.00 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 84.41 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 83.99 | gold quality |
| tibialis anterior | UBERON:0001385 | 83.89 | silver quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 83.68 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 83.10 | gold quality |
| primary visual cortex | UBERON:0002436 | 83.08 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 82.52 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 82.52 | gold quality |
| right frontal lobe | UBERON:0002810 | 82.49 | gold quality |
| occipital lobe | UBERON:0002021 | 81.67 | gold quality |
| entorhinal cortex | UBERON:0002728 | 80.67 | gold quality |
| deltoid | UBERON:0001476 | 80.49 | silver quality |
| gastrocnemius | UBERON:0001388 | 80.36 | gold quality |
| right testis | UBERON:0004534 | 80.32 | gold quality |
Single-cell (SCXA)
Detected in 7 experiment(s), a significant marker in 7.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ENAD-27 | yes | 112.60 |
| E-MTAB-5061 | yes | 28.15 |
| E-GEOD-81608 | yes | 23.27 |
| E-GEOD-83139 | yes | 13.18 |
| E-GEOD-93593 | yes | 10.93 |
| E-ANND-3 | yes | 9.81 |
| E-HCAD-31 | yes | 5.16 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
30 targets.
| Target | Regulation |
|---|---|
| ACKR3 | Activation |
| ARX | |
| CEL | |
| CHGA | |
| DLX1 | |
| EBF3 | Repression |
| EGR1 | Activation |
| ETS2 | Activation |
| GAST | |
| GCG | Activation |
| GHRL | |
| HMGN3 | Repression |
| IGF1 | Activation |
| KDM5C | Unknown |
| LGI1 | |
| LMO1 | Unknown |
| LMO3 | Activation |
| MEIS1 | Activation |
| PAX4 | Unknown |
| PHLDA1 | Activation |
| PLPP1 | Repression |
| RASGEF1B | Repression |
| SCT | |
| SHH | |
| SHOX2 | Unknown |
| SLC12A5 | |
| SLIT2 | |
| SST | |
| TGFB3 | Activation |
| TPM1 |
Upstream regulators (CollecTRI, top): ARX, DLX2, ISL1, NKX2-2, NKX6-1, PAX4, SHOX2
miRNA regulators (miRDB)
85 targeting ARX, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6870-5P | 99.99 | 68.55 | 2115 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-7152-3P | 99.97 | 67.47 | 849 |
| HSA-MIR-4723-5P | 99.97 | 68.70 | 2034 |
| HSA-MIR-5698 | 99.97 | 68.49 | 2029 |
| HSA-MIR-7111-5P | 99.97 | 68.48 | 2062 |
| HSA-MIR-128-3P | 99.95 | 71.17 | 2484 |
| HSA-MIR-216A-3P | 99.95 | 71.19 | 2505 |
| HSA-MIR-651-3P | 99.94 | 73.48 | 5177 |
| HSA-MIR-454-3P | 99.91 | 74.01 | 1925 |
| HSA-MIR-3671 | 99.90 | 73.04 | 3897 |
| HSA-MIR-130A-3P | 99.90 | 73.31 | 1861 |
| HSA-MIR-130B-3P | 99.90 | 73.27 | 1850 |
| HSA-MIR-301A-3P | 99.90 | 73.15 | 1839 |
| HSA-MIR-301B-3P | 99.90 | 73.19 | 1836 |
| HSA-MIR-3666 | 99.90 | 73.24 | 1833 |
| HSA-MIR-4295 | 99.90 | 73.11 | 1838 |
| HSA-MIR-3529-3P | 99.90 | 73.55 | 3045 |
| HSA-MIR-548D-3P | 99.87 | 70.67 | 4362 |
| HSA-LET-7A-2-3P | 99.87 | 70.53 | 1921 |
| HSA-MIR-6124 | 99.87 | 69.78 | 3551 |
| HSA-MIR-548BB-3P | 99.86 | 70.58 | 4354 |
| HSA-MIR-3941 | 99.86 | 70.54 | 2735 |
| HSA-LET-7G-3P | 99.85 | 70.43 | 1929 |
| HSA-MIR-548AC | 99.84 | 70.77 | 4351 |
| HSA-MIR-548H-3P | 99.84 | 70.80 | 4349 |
| HSA-MIR-548Z | 99.84 | 70.80 | 4349 |
Functional genomics
ClinGen dosage: haploinsufficiency 3 (sufficient evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- Expression is specific to the telencephalon and thalamus. Mutations cause mental retardation without brain malformations. (PMID:11971879)
- data suggest mutations in the ARX gene are important causes of mental retardation, often associated with diverse neurological manifestations (PMID:12142061)
- A new syndrome of X-linked myoclonic epilepsy with generalized spasticity and intellectual disability in boys (XMESID) has been described and a novel missense mutation (1058C>T) identified in the ARX open reading frame. (PMID:12177367)
- The expression pattern suggests that ARX is involved in the differentiation and maintenance of specific neuronal cell types in the central nervous system. (PMID:12359145)
- ARX plays a role in causing X-linked lissencephaly with abnormal genitalia (PMID:12379852)
- Disruption of the STK9 gene causes severe X-linked infantile spasms and mental retardation. (PMID:12736870)
- 2 point mutations (790delC & R332C) in 2 X-linked lissencephaly with abnormal genitalia pedigrees affect the homeodomain of the protein & confirm that ARX is a causative gene for XLAG. (PMID:12874405)
- A hemizygous 24-bp duplication in exon 2 (441_464dup)results in expansion from 12 to 20 alanine residues (A155_W156insAAAAAAAA) in the second of four polyalanine tracts in the ARX protein, causing West syndrome. (PMID:12874418)
- Thirteen novel mutations found in ARX gene in 20 males with X-linked lissencephaly with abnormal genitalia. (PMID:14722918)
- expansions in one of the ARX polyA tracts results in nuclear protein aggregation and an increase in cell death; likely underlying the pathogenesis of the associated infantile spasms and mental retardation (PMID:15533998)
- Mutations in the ARX gene can result in many different phenotypes, including phenotypes associated with severe brain malformations and less severe phenotypes associated with syndromic or non-syndromic forms of x-linked mental retadation. (PMID:15707237)
- Familial West syndrome and dystonia caused by an Aristaless related homeobox gene mutation (ARX) (PMID:15726411)
- Four nonsyndromic XLMR families were found to have a 24 base pair duplication mutation in exon 2 of ARX. (PMID:15850492)
- Results confirm the significant contribution of ARX mutations in the etiology of X-linked mental retardation (XLMR), and imply that screening for c.428-451 dup (24 bp) mutation should be recommended in all patients with suspected XLMR. (PMID:16523516)
- These results reinforce the idea that ARX mutations are relevant to mental retardation and are indicative that molecular screening of exon 2 should be considered in males with mental retardation of unknown etiology. (PMID:16845484)
- Activin A has opposite effects on glucagon and arx gene expression in alpha-cells compared with beta-cells, a finding that may have relevance during pancreatic endocrine lineage specification and physiological function of the adult islets (PMID:16988001)
- These findings indicate that mutations in the ARX gene are very rare in autism. (PMID:17044103)
- Features confirm the pleiotropic effect of ARX gene duplication in X-linked mental retardation. (PMID:17082467)
- study underlines the role of ARXdup24 as a critical mutational site causing mental retardation linked to Xp22 (PMID:17480217)
- study showed that the c.304ins(GCG)7 mutation causing an increase from 16 to 23 alanines increased the propensity of ARX protein aggregation and a shift from nuclear to cytoplasmic localization (PMID:17490853)
- Considering genotype-phenotype correlation, we suggest screening of the most common mutation, the c.428_451 dup mutation by PCR, in patients with infantile spasm syndrome, Partington syndrome and non-syndromic X-linked mental retardation. (PMID:17613295)
- This study reports a novel 24-bp in-frame deletion within exon 2 of the ARX gene in a male child with X-linked mental retardation (PMID:17641262)
- The phenotype of infantile spasms with severe dyskinetic quadriparesis increases the number of human disorders that result from the pathologic expansion of single alanine repeats of ARX protein. (PMID:17664401)
- We screened the ARX mutation and found a hemizygous, de novo, 33-bp duplication in exon 2, 298_330dupGCGGCA(GCG)9, in two of three unrelated male patients with EIEE. (PMID:17668384)
- This study report an case of ombination of infantile spasms, non-epileptic seizures and complex movement disorder on the electroclinical features of a 4-year-old boy with an expansion of the trinucleotide repeat in the ARX gene (PMID:18468866)
- Although Arx is necessary for the Dlx-dependent promotion of interneuron migration, it is not required for the GABAergic cell fate commitment mediated by Dlx factors. (PMID:18923043)
- Disorders caused by mutations in the ARX gene include: hydrocephaly, lissencephaly and agenesis of corpus callosum with abnormal genitalia, Partington syndrome S), X-linked infantile spasms , myoclonic epilepsy, and nonspecific mental retardation. (PMID:18975239)
- Results describe three cases of mental retardation in two different families where the mutation in aristaless-related homeobox (ARX) gene c.428_451 dup24 was found while X-fragile syndrome screening was made. (PMID:19085879)
- The first viable knock-in mouse model of infantile spasms syndrome spontaneously recapitulates salient phenotypic features of the human triplet repeat expansion mutation. (PMID:19587282)
- Lissencephaly or mental retardation is caused by ARX mutations without the involvement of other genetic factors. (PMID:19605412)
- ARX mutations are not responsible for early onset severe myoclonic epilepsy in infancy (PMID:19734009)
- Findings widen the spectrum of clinical phenotypes because of mutations in the ARX gene, but also emphasize the molecular pathogenetic effect of individual mutations. (PMID:19738637)
- novel frameshift mutations in the terminal exon of the ARX gene (Ala524fsX534 and E536fsX672) were identified in 2 Ohtahara syndrome patients (2 and 13 years, each) from 2 families (PMID:20384723)
- This review aims to provide a catalog of the currently known mutations in ARX and associated clinical phenotypes. (PMID:20506206)
- ARX contributes not only to endocrine development, but also to exocrine development of the human pancreas, and its deficiency may lead to the severe phenotypes of X-linked lissencephaly with abnormal genitalia patients. (PMID:20538404)
- 2 male individuals, born from monozygotic twin sisters, with Ohtahara syndrome that evolved into West syndrome phenotype and epileptic encephalopathy; previously unreported missense mutation in exon 5 of ARX gene (c.1604T>A) was found in both children (PMID:21108397)
- ARX polyA expansions are primarily associated with syndromic mental retardation. (PMID:21204215)
- Contractions in the second polyA tract of ARX are rare, non-pathogenic polymorphisms. (PMID:21204226)
- study described a novel ARX mutation in a family, leading to Ohtahara syndrome with abnormal genital and psychomotor development (OAGPD) in a male infant, and neurocognitive/psychiatric phenomena in heterozygous, carrier females (PMID:21426321)
- This study confirmed the pivotal role of the aristaless related homeobox in the pathogenesis of epileptic encephalopathies (PMID:21482751)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | arxa | ENSDARG00000058011 |
| danio_rerio | arxb | ENSDARG00000101523 |
| mus_musculus | Arx | ENSMUSG00000035277 |
| rattus_norvegicus | Arx | ENSRNOG00000053562 |
Paralogs (50): PAX6 (ENSG00000007372), PAX7 (ENSG00000009709), ALX4 (ENSG00000052850), GSC2 (ENSG00000063515), PITX1 (ENSG00000069011), PAX2 (ENSG00000075891), RHOXF1 (ENSG00000101883), CRX (ENSG00000105392), EVX1 (ENSG00000106038), PAX4 (ENSG00000106331), NOBOX (ENSG00000106410), PITX3 (ENSG00000107859), PHOX2B (ENSG00000109132), OTX1 (ENSG00000115507), PRRX1 (ENSG00000116132), VSX2 (ENSG00000119614), ESX1 (ENSG00000123576), PAX8 (ENSG00000125618), PAX1 (ENSG00000125813), RHOXF2 (ENSG00000131721), GSC (ENSG00000133937), RAX (ENSG00000134438), PAX3 (ENSG00000135903), ALX3 (ENSG00000156150), HESX1 (ENSG00000163666), PITX2 (ENSG00000164093), UNCX (ENSG00000164853), PHOX2A (ENSG00000165462), OTX2 (ENSG00000165588), DRGX (ENSG00000165606), PRRX2 (ENSG00000167157), SHOX2 (ENSG00000168779), OTP (ENSG00000171540), RAX2 (ENSG00000173976), EVX2 (ENSG00000174279), PROP1 (ENSG00000175325), ISX (ENSG00000175329), ALX1 (ENSG00000180318), MIXL1 (ENSG00000185155), SHOX (ENSG00000185960)
Protein
Protein identifiers
Homeobox protein ARX — Q96QS3 (reviewed: Q96QS3)
Alternative names: Aristaless-related homeobox
All UniProt accessions (2): Q96QS3, A0A1B0GUI3
UniProt curated annotations — full annotation on UniProt →
Function. Transcription factor. Binds to specific sequence motif 5’-TAATTA-3’ in regulatory elements of target genes, such as histone demethylase KDM5C. Positively modulates transcription of KDM5C. Activates expression of KDM5C synergistically with histone lysine demethylase PHF8 and perhaps in competition with transcription regulator ZNF711; synergy may be related to enrichment of histone H3K4me3 in regulatory elements. Required for normal brain development. Plays a role in neuronal proliferation, interneuronal migration and differentiation in the embryonic forebrain. May also be involved in axonal guidance in the floor plate.
Subcellular location. Nucleus.
Tissue specificity. Expressed predominantly in fetal and adult brain and skeletal muscle. Expression is specific to the telencephalon and ventral thalamus. There is an absence of expression in the cerebellum throughout development and also in adult.
Disease relevance. Lissencephaly, X-linked 2 (LISX2) [MIM:300215] A classic type lissencephaly associated with abnormal genitalia. Patients have severe congenital or postnatal microcephaly, lissencephaly, agenesis of the corpus callosum, neonatal-onset intractable epilepsy, poor temperature regulation, chronic diarrhea, and ambiguous or underdeveloped genitalia. The disease is caused by variants affecting the gene represented in this entry. Also called X-linked lissencephaly with abnormal genitalia (XLAG). Developmental and epileptic encephalopathy 1 (DEE1) [MIM:308350] A severe form of epilepsy characterized by frequent tonic seizures or spasms beginning in infancy with a specific EEG finding of suppression-burst patterns, characterized by high-voltage bursts alternating with almost flat suppression phases. Patients may progress to West syndrome, which is characterized by tonic spasms with clustering, arrest of psychomotor development, and hypsarrhythmia on EEG. The disease is caused by variants affecting the gene represented in this entry. Partington syndrome (PRTS) [MIM:309510] An X-linked developmental disorder characterized by intellectual disability, episodic dystonic hand movements, lower limb spasticity, and dysarthria. The disease is caused by variants affecting the gene represented in this entry. Intellectual developmental disorder, X-linked 29 (XLID29) [MIM:300419] A disorder characterized by significantly below average general intellectual functioning associated with impairments in adaptive behavior and manifested during the developmental period. Intellectual deficiency is the only primary symptom of non-syndromic X-linked forms, while syndromic intellectual disability presents with associated physical, neurological and/or psychiatric manifestations. The disease is caused by variants affecting the gene represented in this entry. Agenesis of the corpus callosum, with abnormal genitalia (ACCAG) [MIM:300004] An X-linked syndrome with variable expression in females. It is characterized by agenesis of corpus callosum, intellectual disability and seizures. Manifestations in surviving males include severe acquired micrencephaly, intellectual disability, limb contractures, scoliosis, tapered fingers with hyperconvex nails, a characteristic face with large eyes, prominent supraorbital ridges, synophrys, optic atrophy, broad alveolar ridges, and seizures. Urologic anomalies include renal dysplasia, cryptorchidism, and hypospadias. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the paired homeobox family. Bicoid subfamily.
RefSeq proteins (1): NP_620689* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001356 | HD | Domain |
| IPR003654 | OAR_dom | Domain |
| IPR009057 | Homeodomain-like_sf | Homologous_superfamily |
| IPR017970 | Homeobox_CS | Conserved_site |
| IPR050649 | Paired_Homeobox_TFs | Family |
Pfam: PF00046, PF03826
UniProt features (25 total): sequence variant 12, compositionally biased region 5, region of interest 3, mutagenesis site 2, chain 1, DNA-binding region 1, short sequence motif 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96QS3-F1 | 56.51 | 0.11 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 358 | abolishes sequence-specific dna-binding; reduces transcriptional repression of lmo1 and shox2. abolishes transcriptional |
| 379 | abolishes sequence-specific dna-binding; reduces transcriptional repression of lmo1 and shox2. abolishes transcriptional |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 523 (showing top):
GOBP_FOREBRAIN_NEURON_DEVELOPMENT, GOBP_DIGESTION, GOBP_OLFACTORY_BULB_INTERNEURON_DIFFERENTIATION, GOBP_EPITHELIUM_DEVELOPMENT, TSENG_IRS1_TARGETS_UP, STAEGE_EWING_FAMILY_TUMOR, RORA1_01, GOBP_REGULATION_OF_DEVELOPMENTAL_GROWTH, PEREZ_TP63_TARGETS, GOBP_GROWTH, GOBP_NEUROGENESIS, TGACCTY_ERR1_Q2, AAAYRNCTG_UNKNOWN, USF_C, GOBP_CELL_PROLIFERATION_IN_FOREBRAIN
GO Biological Process (24): negative regulation of transcription by RNA polymerase II (GO:0000122), regulation of transcription by RNA polymerase II (GO:0006357), axon guidance (GO:0007411), positive regulation of gene expression (GO:0010628), globus pallidus development (GO:0021759), cerebral cortex tangential migration (GO:0021800), embryonic olfactory bulb interneuron precursor migration (GO:0021831), cell proliferation in forebrain (GO:0021846), cerebral cortex GABAergic interneuron migration (GO:0021853), organ growth (GO:0035265), lipid digestion (GO:0044241), positive regulation of transcription by RNA polymerase II (GO:0045944), positive regulation of organ growth (GO:0046622), neuron fate commitment (GO:0048663), neuron development (GO:0048666), regulation of epithelial cell proliferation (GO:0050678), epithelial cell fate commitment (GO:0072148), neuron migration (GO:0001764), regulation of DNA-templated transcription (GO:0006355), nervous system development (GO:0007399), olfactory bulb development (GO:0021772), cell differentiation (GO:0030154), forebrain development (GO:0030900), interneuron migration (GO:1904936)
GO Molecular Function (9): RNA polymerase II transcription regulatory region sequence-specific DNA binding (GO:0000977), RNA polymerase II cis-regulatory region sequence-specific DNA binding (GO:0000978), DNA-binding transcription factor activity, RNA polymerase II-specific (GO:0000981), DNA-binding transcription repressor activity, RNA polymerase II-specific (GO:0001227), DNA-binding transcription activator activity, RNA polymerase II-specific (GO:0001228), chromatin binding (GO:0003682), sequence-specific double-stranded DNA binding (GO:1990837), DNA binding (GO:0003677), protein binding (GO:0005515)
GO Cellular Component (2): chromatin (GO:0000785), nucleus (GO:0005634)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| RNA polymerase II transcription regulatory region sequence-specific DNA binding | 4 |
| regulation of transcription by RNA polymerase II | 3 |
| transcription by RNA polymerase II | 3 |
| regulation of gene expression | 2 |
| neuron differentiation | 2 |
| cell fate commitment | 2 |
| DNA-binding transcription factor activity, RNA polymerase II-specific | 2 |
| binding | 2 |
| negative regulation of DNA-templated transcription | 1 |
| regulation of DNA-templated transcription | 1 |
| axonogenesis | 1 |
| neuron projection guidance | 1 |
| gene expression | 1 |
| positive regulation of macromolecule biosynthetic process | 1 |
| diencephalon development | 1 |
| neural nucleus development | 1 |
| cerebral cortex cell migration | 1 |
| substrate-independent telencephalic tangential interneuron migration | 1 |
| olfactory bulb interneuron development | 1 |
| tangential migration from the subventricular zone to the olfactory bulb | 1 |
| forebrain development | 1 |
| neural precursor cell proliferation | 1 |
| interneuron migration from the subpallium to the cortex | 1 |
| cerebral cortex GABAergic interneuron development | 1 |
| interneuron migration | 1 |
| multicellular organismal process | 1 |
| developmental growth | 1 |
| digestion | 1 |
| positive regulation of DNA-templated transcription | 1 |
| organ growth | 1 |
| regulation of organ growth | 1 |
| positive regulation of developmental growth | 1 |
| positive regulation of multicellular organismal process | 1 |
| cell development | 1 |
| regulation of cell population proliferation | 1 |
| epithelial cell proliferation | 1 |
| epithelial cell differentiation | 1 |
| cell migration | 1 |
| generation of neurons | 1 |
| DNA-templated transcription | 1 |
Protein interactions and networks
STRING
710 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ARX | PCDH19 | Q8TAB3 | 818 |
| ARX | CDKL5 | O76039 | 804 |
| ARX | STXBP1 | P61764 | 799 |
| ARX | SLC25A22 | Q9H936 | 781 |
| ARX | PNKP | Q96T60 | 751 |
| ARX | SCN1A | P35498 | 750 |
| ARX | IPO13 | O94829 | 730 |
| ARX | SPTAN1 | Q13813 | 722 |
| ARX | ARHGEF9 | O43307 | 682 |
| ARX | VCX3B | Q9H321 | 670 |
| ARX | PLCB1 | Q9NQ66 | 668 |
| ARX | POLA1 | P09884 | 668 |
| ARX | VCX | Q9H320 | 648 |
| ARX | VCX2 | Q9H322 | 647 |
| ARX | LMO1 | P25800 | 638 |
IntAct
19 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PHF8 | ARX | psi-mi:“MI:0915”(physical association) | 0.520 |
| ACTN1 | ARX | psi-mi:“MI:0915”(physical association) | 0.510 |
| PICK1 | ARX | psi-mi:“MI:0915”(physical association) | 0.510 |
| ARX | psi-mi:“MI:0915”(physical association) | 0.370 | |
| ACTN2 | ARX | psi-mi:“MI:0915”(physical association) | 0.370 |
| TLE5 | ARX | psi-mi:“MI:0915”(physical association) | 0.370 |
| CYTIP | ARX | psi-mi:“MI:0915”(physical association) | 0.370 |
| DNM2 | ARX | psi-mi:“MI:0915”(physical association) | 0.370 |
| IPO13 | ARX | psi-mi:“MI:0915”(physical association) | 0.370 |
| NELL2 | ARX | psi-mi:“MI:0915”(physical association) | 0.370 |
| PKM | ARX | psi-mi:“MI:0915”(physical association) | 0.370 |
| SETD2 | ARX | psi-mi:“MI:0915”(physical association) | 0.370 |
| ARX | MIGA1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (29): AP2A1 (Affinity Capture-MS), APOB (Affinity Capture-MS), CLTA (Affinity Capture-MS), CLTB (Affinity Capture-MS), CLTC (Affinity Capture-MS), PIK3C2A (Affinity Capture-MS), RBM4 (Affinity Capture-MS), CLINT1 (Affinity Capture-MS), SEC16A (Affinity Capture-MS), TACC3 (Affinity Capture-MS), CYFIP1 (Affinity Capture-MS), STK39 (Affinity Capture-MS), GTSE1 (Affinity Capture-MS), KLC2 (Affinity Capture-MS), CD99L2 (Affinity Capture-MS)
ESM2 similar proteins: A2A9A2, A6QQ94, A6YP92, A7MB54, B5RHS5, E9PZZ1, M0R6D8, O02786, O08934, O09029, O35085, P13297, P28360, P46153, P50548, P78413, P78414, P78415, P81067, P81068, P84550, P97830, Q12952, Q13207, Q14549, Q14774, Q2VL76, Q2VL77, Q2VL78, Q2VL79, Q2VL80, Q2VL82, Q2VL83, Q2VL84, Q2VL85, Q2VL86, Q2VL87, Q2VL88, Q2VWA4, Q5SQQ9
Diamond homologs: A1A546, A1YEV8, A1YG25, A2T711, A6NJT0, A6NNA5, A6YP92, G5EC89, G5EDS1, L8E946, O08934, O09113, O14813, O15266, O18381, O35085, O35137, O35602, O35690, O35750, O42115, O42201, O42250, O42356, O42357, O42358, O42477, O42567, O60902, O70137, O73917, O95076, O97039, P0DMV5, P23759, P23760, P24610, P26367, P26630, P29506
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| ARX | “down-regulates quantity by repression” | EBF3 | “transcriptional regulation” |
| DLX2 | “up-regulates quantity by expression” | ARX | “transcriptional regulation” |
| PRKCA | “up-regulates activity” | ARX | phosphorylation |
Disease & clinical
Clinical variants and AI predictions
ClinVar
978 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 105 |
| Likely pathogenic | 26 |
| Uncertain significance | 371 |
| Likely benign | 359 |
| Benign | 18 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1074175 | NM_139058.3(ARX):c.1443dup (p.Gly482fs) | Pathogenic |
| 11188 | NM_139058.3(ARX):c.1058C>T (p.Pro353Leu) | Pathogenic |
| 11189 | NM_139058.3(ARX):c.1449-816_*460del | Pathogenic |
| 11192 | NM_139058.3(ARX):c.995G>A (p.Arg332His) | Pathogenic |
| 11193 | NM_139058.3(ARX):c.1117C>T (p.Gln373Ter) | Pathogenic |
| 11195 | NG_008281.1:g.(?4983)(8028_10643)del | Pathogenic |
| 11197 | NM_139058.3(ARX):c.1028T>A (p.Leu343Gln) | Pathogenic |
| 11198 | NM_139058.3(ARX):c.98T>C (p.Leu33Pro) | Pathogenic |
| 11200 | NM_139058.3(ARX):c.998C>A (p.Thr333Asn) | Pathogenic |
| 11201 | NM_139058.3(ARX):c.1105G>T (p.Glu369Ter) | Pathogenic |
| 11202 | NM_139058.3(ARX):c.309_341dup (p.Ala105_Ala115dup) | Pathogenic |
| 11205 | NM_139058.3(ARX):c.232G>T (p.Glu78Ter) | Pathogenic |
| 1164076 | NM_139058.3(ARX):c.1406_1415del (p.Ala469fs) | Pathogenic |
| 1172770 | NM_139058.3(ARX):c.947del (p.Gly316fs) | Pathogenic |
| 1299655 | NM_139058.3(ARX):c.1472del (p.Leu491fs) | Pathogenic |
| 1374869 | NM_139058.3(ARX):c.1125G>A (p.Trp375Ter) | Pathogenic |
| 1410535 | NM_139058.3(ARX):c.642_645del (p.Pro215fs) | Pathogenic |
| 1434577 | NM_139058.3(ARX):c.1120-2A>G | Pathogenic |
| 1526401 | NM_139058.3(ARX):c.26dup (p.Cys10fs) | Pathogenic |
| 156619 | NM_139058.3(ARX):c.1141G>A (p.Ala381Thr) | Pathogenic |
| 157739 | NM_139058.3(ARX):c.1111C>T (p.Arg371Ter) | Pathogenic |
| 157744 | NM_139058.3(ARX):c.1372del (p.Ala458fs) | Pathogenic |
| 157746 | NM_139058.3(ARX):c.1414C>T (p.Arg472Ter) | Pathogenic |
| 157748 | NM_139058.3(ARX):c.1465del (p.Ala489fs) | Pathogenic |
| 157749 | NM_139058.3(ARX):c.1544del (p.Gly515fs) | Pathogenic |
| 157750 | NM_139058.3(ARX):c.172del (p.Ala58fs) | Pathogenic |
| 157756 | NM_139058.3(ARX):c.335_368del (p.Ala112fs) | Pathogenic |
| 157757 | NM_139058.3(ARX):c.34G>T (p.Glu12Ter) | Pathogenic |
| 157759 | NM_139058.3(ARX):c.617del (p.Gly206fs) | Pathogenic |
| 157765 | NM_139058.3(ARX):c.995G>T (p.Arg332Leu) | Pathogenic |
SpliceAI
873 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| X:25010254:GCTCA:G | donor_loss | 1.0000 |
| X:25010256:TCA:T | donor_loss | 1.0000 |
| X:25010258:A:C | donor_loss | 1.0000 |
| X:25015536:CCTTA:C | donor_loss | 1.0000 |
| X:25015537:CTTA:C | donor_loss | 1.0000 |
| X:25015538:TTAC:T | donor_loss | 1.0000 |
| X:25015539:TA:T | donor_loss | 1.0000 |
| X:25015540:A:AC | donor_gain | 1.0000 |
| X:25015540:A:T | donor_loss | 1.0000 |
| X:25015541:C:CC | donor_gain | 1.0000 |
| X:25015541:C:CG | donor_loss | 1.0000 |
| X:25007113:G:A | donor_gain | 0.9900 |
| X:25010301:CCTCC:C | acceptor_gain | 0.9900 |
| X:25010302:CTCCC:C | acceptor_gain | 0.9900 |
| X:25010303:TCCCT:T | acceptor_gain | 0.9900 |
| X:25010304:CC:C | acceptor_gain | 0.9900 |
| X:25010305:CCTA:C | acceptor_gain | 0.9900 |
| X:25010306:C:CA | acceptor_loss | 0.9900 |
| X:25010306:C:CC | acceptor_gain | 0.9900 |
| X:25010307:T:C | acceptor_loss | 0.9900 |
| X:25012917:CATA:C | donor_loss | 0.9900 |
| X:25012918:ATACC:A | donor_loss | 0.9900 |
| X:25012919:TA:T | donor_loss | 0.9900 |
| X:25012920:ACCT:A | donor_loss | 0.9900 |
| X:25014562:T:TA | donor_gain | 0.9900 |
| X:25014802:T:A | donor_gain | 0.9900 |
| X:25015540:AC:A | donor_gain | 0.9900 |
| X:25015541:CC:C | donor_gain | 0.9900 |
| X:25015541:CCTTG:C | donor_gain | 0.9900 |
| X:25004909:GCCTG:G | acceptor_loss | 0.9800 |
AlphaMissense
3585 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| X:25004743:G:T | A539D | 1.000 |
| X:25004744:C:G | A539P | 1.000 |
| X:25004749:A:G | L537P | 1.000 |
| X:25004751:C:A | R536S | 1.000 |
| X:25004751:C:G | R536S | 1.000 |
| X:25004752:C:A | R536M | 1.000 |
| X:25004752:C:G | R536T | 1.000 |
| X:25004755:A:G | L535P | 1.000 |
| X:25004755:A:T | L535Q | 1.000 |
| X:25004764:A:C | I532R | 1.000 |
| X:25004764:A:G | I532T | 1.000 |
| X:25004764:A:T | I532K | 1.000 |
| X:25004766:G:C | S531R | 1.000 |
| X:25004766:G:T | S531R | 1.000 |
| X:25004767:C:A | S531I | 1.000 |
| X:25004768:T:G | S531R | 1.000 |
| X:25007404:C:A | K385N | 1.000 |
| X:25007404:C:G | K385N | 1.000 |
| X:25007405:T:A | K385M | 1.000 |
| X:25007406:T:C | K385E | 1.000 |
| X:25007408:C:G | R384P | 1.000 |
| X:25007409:G:A | R384C | 1.000 |
| X:25007409:G:T | R384S | 1.000 |
| X:25007410:C:A | W383C | 1.000 |
| X:25007410:C:G | W383C | 1.000 |
| X:25007412:A:G | W383R | 1.000 |
| X:25007412:A:T | W383R | 1.000 |
| X:25007413:C:A | K382N | 1.000 |
| X:25007413:C:G | K382N | 1.000 |
| X:25007414:T:A | K382M | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000074971 (X:25006584 G>A,T), RS1000106379 (X:25014422 G>A), RS1000498226 (X:25012086 G>A), RS1000954674 (X:25011689 T>C), RS1001362221 (X:25012821 A>G), RS1001384484 (X:25005315 G>A), RS1002214533 (X:25003487 A>C), RS1002515777 (X:25007824 T>C), RS1002648579 (X:25011436 C>T), RS1002662680 (X:25017511 C>T), RS1003146115 (X:25017903 G>A,C), RS1003424363 (X:25011166 G>A), RS1003856468 (X:25005417 C>A), RS1003885772 (X:25015283 T>C), RS1003997021 (X:25011419 T>C)
Disease associations
OMIM: gene MIM:300382 | disease phenotypes: MIM:300419, MIM:308350, MIM:217990, MIM:309510, MIM:300004, MIM:300215, MIM:209850, MIM:613154, MIM:304050
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| intellectual disability, X-linked, with or without seizures, ARX-related | Definitive | X-linked |
| X-linked complex neurodevelopmental disorder | Definitive | X-linked |
| X-linked lissencephaly with abnormal genitalia | Strong | X-linked |
| neurodevelopmental disorder | Strong | X-linked |
| developmental and epileptic encephalopathy, 1 | Strong | X-linked |
| genetic developmental and epileptic encephalopathy | Supportive | Autosomal dominant |
| corpus callosum agenesis-abnormal genitalia syndrome | Supportive | X-linked |
| X-linked spasticity-intellectual disability-epilepsy syndrome | Supportive | X-linked |
| infantile spasms | Supportive | Autosomal dominant |
| infantile epileptic-dyskinetic encephalopathy | Supportive | X-linked |
| non-syndromic X-linked intellectual disability | Supportive | X-linked |
| Partington syndrome | Supportive | X-linked |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| genetic developmental and epileptic encephalopathy | Definitive | XL |
| X-linked complex neurodevelopmental disorder | Definitive | XL |
Mondo (18): intellectual disability, X-linked, with or without seizures, ARX-related (MONDO:0010317), developmental and epileptic encephalopathy, 1 (MONDO:0010632), arachnoid cyst (MONDO:0008813), corpus callosum, agenesis of (MONDO:0009022), Partington syndrome (MONDO:0010654), corpus callosum agenesis-abnormal genitalia syndrome (MONDO:0010224), X-linked lissencephaly with abnormal genitalia (MONDO:0010268), X-linked spasticity-intellectual disability-epilepsy syndrome (MONDO:0017856), autism (MONDO:0005260), intellectual disability (MONDO:0001071), muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A6 (MONDO:0013158), Aicardi syndrome (MONDO:0010568), X-linked complex neurodevelopmental disorder (MONDO:0100148), genetic developmental and epileptic encephalopathy (MONDO:0100062), infantile spasms (MONDO:0018097)
Orphanet (12): X-linked non-syndromic intellectual disability (Orphanet:777), Isolated corpus callosum agenesis (Orphanet:200), Arachnoid cyst (Orphanet:2356), Partington syndrome (Orphanet:94083), Corpus callosum agenesis-abnormal genitalia syndrome (Orphanet:2508), X-linked lissencephaly with abnormal genitalia (Orphanet:452), X-linked spasticity-intellectual disability-epilepsy syndrome (Orphanet:3175), ARX-related epileptic encephalopathy (Orphanet:182079), Muscle-eye-brain disease (Orphanet:588), Walker-Warburg syndrome (Orphanet:899), Aicardi syndrome (Orphanet:50), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
169 total (30 of 169 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000020 | Urinary incontinence |
| HP:0000023 | Inguinal hernia |
| HP:0000028 | Cryptorchidism |
| HP:0000047 | Hypospadias |
| HP:0000053 | Macroorchidism |
| HP:0000054 | Micropenis |
| HP:0000062 | Ambiguous genitalia |
| HP:0000070 | Ureterocele |
| HP:0000110 | Renal dysplasia |
| HP:0000175 | Cleft palate |
| HP:0000187 | Broad alveolar ridges |
| HP:0000218 | High palate |
| HP:0000219 | Thin upper lip vermilion |
| HP:0000252 | Microcephaly |
| HP:0000260 | Wide anterior fontanel |
| HP:0000280 | Coarse facial features |
| HP:0000294 | Low anterior hairline |
| HP:0000325 | Triangular face |
| HP:0000336 | Prominent supraorbital ridges |
| HP:0000340 | Sloping forehead |
| HP:0000343 | Long philtrum |
| HP:0000347 | Micrognathia |
| HP:0000348 | High forehead |
| HP:0000369 | Low-set ears |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000411 | Protruding ear |
| HP:0000426 | Prominent nasal bridge |
| HP:0000431 | Wide nasal bridge |
| HP:0000463 | Anteverted nares |
| HP:0000486 | Strabismus |
GWAS associations
0 associations (top):
MeSH disease descriptors (11)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D061085 | Agenesis of Corpus Callosum | C10.500.034; C16.131.666.034; C23.300.008 |
| D058540 | Aicardi Syndrome | C10.500.034.687; C11.270.019; C16.131.162; C16.131.666.034.687; C16.320.290.019; C16.320.322.030 |
| D016080 | Arachnoid Cysts | C04.182.044; C04.588.614.250.387.100; C10.500.142.100; C10.551.240.375.100; C16.131.666.142.100 |
| D001321 | Autistic Disorder | F03.625.164.113.500 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D065886 | Neurodevelopmental Disorders | F03.625 |
| C567924 | Infantile Epileptic-Dyskinetic Encephalopathy (supp.) | |
| C564563 | Lissencephaly, X-Linked, 2 (supp.) | |
| C564490 | Mental Retardation, X-Linked Nonsyndromic (supp.) | |
| C563150 | Mental Retardation, X-Linked, With Or Without Seizures, Arx-Related (supp.) | |
| C563110 | Proud Syndrome (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
33 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, increases expression, increases methylation, affects cotreatment, decreases expression | 8 |
| trichostatin A | affects cotreatment, decreases expression | 3 |
| mercuric bromide | decreases expression, affects cotreatment | 2 |
| entinostat | decreases expression, affects cotreatment | 2 |
| Panobinostat | affects cotreatment, decreases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| p-Chloromercuribenzoic Acid | decreases expression, affects cotreatment | 2 |
| aristolochic acid I | increases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| propionaldehyde | decreases expression | 1 |
| bisphenol A | decreases methylation | 1 |
| arsenite | increases methylation | 1 |
| 2,3-bis(3’-hydroxybenzyl)butyrolactone | affects cotreatment, decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| nutlin 3 | affects cotreatment, increases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| jinfukang | decreases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Arbutin | decreases expression | 1 |
| Atrazine | increases expression | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Caffeine | increases phosphorylation | 1 |
| Camptothecin | increases expression | 1 |
| Cisplatin | decreases expression | 1 |
| Coumestrol | affects cotreatment, decreases expression | 1 |
| Dactinomycin | affects cotreatment, increases expression | 1 |
| Diethylhexyl Phthalate | decreases expression | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Silicon Dioxide | decreases expression | 1 |
Cellosaurus cell lines
5 cell lines: 3 induced pluripotent stem cell, 1 transformed cell line, 1 embryonic stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A7IQ | SHCDNi005-A | Induced pluripotent stem cell | Male |
| CVCL_A8MU | OGHFUi001-A | Induced pluripotent stem cell | Male |
| CVCL_C0CK | OGHFUi001-A-1 | Induced pluripotent stem cell | Male |
| CVCL_C0LF | GM28075 | Transformed cell line | Male |
| CVCL_C1W6 | SCSe001-A-4 | Embryonic stem cell | Male |
Clinical trials (associated diseases)
538 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01413711 | PHASE4 | WITHDRAWN | An Open-Label, Single and Multiple Oral Dose Pharmacokinetic Study of Vigabatrin in Infants With Infantile Spasms |
| NCT02092883 | PHASE4 | COMPLETED | Evaluation of Neuroinflammation in Children With Infantile Spasms |
| NCT04586348 | PHASE4 | UNKNOWN | Prenatal Iodine Supplementation and Early Childhood Neurodevelopment |
| NCT04873115 | PHASE4 | UNKNOWN | Double-blind, Placebo-controlled, Randomized Clinical Trial Comparing the Efficacy and Safety of Sialanar Plus orAl rehabiLitation Against Placebo Plus Oral Rehabilitation for chIldren and Adolescents With seVere Sialorrhoea and Neurodisabilties, |
| NCT00211796 | PHASE4 | COMPLETED | Divalproex Sodium ER in Adult Autism |
| NCT00391261 | PHASE4 | COMPLETED | An Open-label Trial of Metformin for Weight Control of Pediatric Patients on Antipsychotic Medications. |
| NCT00409747 | PHASE4 | COMPLETED | Minocycline to Treat Childhood Regressive Autism |
| NCT00576732 | PHASE4 | COMPLETED | A Study of the Effectiveness and Safety of Two Doses of Risperidone in the Treatment of Children and Adolescents With Autistic Disorder |
| NCT00844753 | PHASE4 | COMPLETED | Atomoxetine, Placebo and Parent Management Training in Autism |
| NCT01028820 | PHASE4 | COMPLETED | FMRI Brain Activation of Aripiprazole Treatment in Autism Spectrum Disorders |
| NCT01098383 | PHASE4 | UNKNOWN | Treatment With Acetyl-Choline Esterase Inhibitors in Children With Autism Spectrum Disorders |
| NCT01333865 | PHASE4 | COMPLETED | A Study of Memantine Hydrochloride (Namenda®) for Cognitive and Behavioral Impairment in Adults With Autism Spectrum Disorders |
| NCT01337700 | PHASE4 | COMPLETED | Milnacipran in Autism and the Functional Locus Coeruleus and Noradrenergic Model of Autism |
| NCT01695200 | PHASE4 | COMPLETED | Omega-3 Fatty Acids in Autism Spectrum Disorders |
| NCT02069977 | PHASE4 | UNKNOWN | Study to Evaluate the Efficacy and Safety of Aripiprazole |
| NCT02096952 | PHASE4 | COMPLETED | Methylphenidate ER Liquid Formulation in Adults With ASD and ADHD |
| NCT02199925 | PHASE4 | UNKNOWN | An Open-Label Study to Evaluate the Efficacy of High-Dose Gammaplex in Children on the Autism Spectrum |
| NCT02235467 | PHASE4 | COMPLETED | Multisite Study: Parental Training Using Video Modelling to Develop Social Skills in Children With Autism |
| NCT02255565 | PHASE4 | COMPLETED | Dose Response Effects of Quillivant XR in Children With ADHD and Autism: A Pilot Study |
| NCT02940574 | PHASE4 | COMPLETED | Neural and Behavioral Effects of Oxytocin in Autism Spectrum Disorders |
| NCT03333629 | PHASE4 | COMPLETED | Promoting Positive Outcomes for Individuals With ASD: Linking Early Detection, Treatment, and Long-term Outcomes |
| NCT03337646 | PHASE4 | COMPLETED | Evaluation of the Effect and Safety of Lisdexamfetamine in Children Aged 6-12 With ADHD and Autism |
| NCT03538431 | PHASE4 | COMPLETED | Improving Driving in Young People With Autism Spectrum Disorders |
| NCT03757585 | PHASE4 | COMPLETED | Natural Treatments for the Management of Emotional Dysregulation in Youth With Non-verbal Learning Disability (NVLD) and/or Autism Spectrum Disorders (ASD) |
| NCT04903353 | PHASE4 | COMPLETED | Pragmatic Trial Comparing Weight Gain in Children With Autism Taking Risperidone Versus Aripiprazole |
| NCT05063656 | PHASE4 | COMPLETED | Biomarker-Driven Pharmacological Treatment of Adolescents With Autism Spectrum Disorder With Gabapentin |
| NCT05146245 | PHASE4 | UNKNOWN | Safety and Pharmacokinetics of Antipsychotics in Children 2: Studying TDM in an RCT |
| NCT05916339 | PHASE4 | RECRUITING | AWARE: Management of ADHD in Autism Spectrum Disorder |
| NCT05954052 | PHASE4 | TERMINATED | A Study of Glutathione in Children With Autism Spectrum Disorder |
| NCT06853665 | PHASE4 | RECRUITING | The TEAM Study - Treatment Efficacy for Autism/Attention Using Mixed Amphetamine |
| NCT07054697 | PHASE4 | COMPLETED | Pilot-RCT With Individualized Homeopathic Treatment in the Children With Autism Spectrum Disorder |
| NCT07161804 | PHASE4 | COMPLETED | Pilot RCT Using Homeopathic Medicines in ASD |
| NCT07439042 | PHASE4 | NOT_YET_RECRUITING | Buspirone for Anxiety in Autistic Youth |
| NCT06719141 | PHASE3 | RECRUITING | A Study to Investigate LP352 in Children and Adults With Developmental and Epileptic Encephalopathies (DEE) |
| NCT06908226 | PHASE3 | ENROLLING_BY_INVITATION | A Study to Investigate LP352 in Children and Adults With Developmental and Epileptic Encephalopathy (DEE) |
| NCT01575639 | PHASE3 | COMPLETED | Prednisolone in Infantile Spasms- High Dose Versus Usual Dose |
| NCT01828437 | PHASE3 | COMPLETED | Addition of Pyridoxine to Prednisolone in Infantile Spasms |
| NCT02299115 | PHASE3 | WITHDRAWN | Prednisolone Versus Vigabatrin in the First-line Treatment of Infantile Spasms |
| NCT02953548 | PHASE3 | COMPLETED | Trial of Cannabidiol (CBD; GWP42003-P) for Infantile Spasms (GWPCARE7) |
| NCT02954887 | PHASE3 | COMPLETED | Phase 3 Trial of Cannabidiol (CBD; GWP42003-P) for Infantile Spasms: Open-label Extension Phase (GWPCARE7) |
Related Atlas pages
- Associated diseases: X-linked lissencephaly with abnormal genitalia, intellectual disability, X-linked, with or without seizures, ARX-related, X-linked complex neurodevelopmental disorder, genetic developmental and epileptic encephalopathy, corpus callosum agenesis-abnormal genitalia syndrome, X-linked spasticity-intellectual disability-epilepsy syndrome, infantile spasms, infantile epileptic-dyskinetic encephalopathy, non-syndromic X-linked intellectual disability, Partington syndrome, neurodevelopmental disorder, developmental and epileptic encephalopathy, 1
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Aicardi syndrome, arachnoid cyst, corpus callosum agenesis-abnormal genitalia syndrome, corpus callosum, agenesis of, developmental and epileptic encephalopathy, 1, genetic developmental and epileptic encephalopathy, infantile epileptic-dyskinetic encephalopathy, infantile spasms, intellectual disability, X-linked, with or without seizures, ARX-related, muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A6, non-syndromic X-linked intellectual disability, Partington syndrome, X-linked complex neurodevelopmental disorder, X-linked lissencephaly with abnormal genitalia, X-linked spasticity-intellectual disability-epilepsy syndrome