ASB4
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Also known as ASB-4
Summary
ASB4 (ankyrin repeat and SOCS box containing 4, HGNC:16009) is a protein-coding gene on chromosome 7q21.3, encoding Ankyrin repeat and SOCS box protein 4 (Q9Y574). Probable substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
The protein encoded by this gene is a member of the ankyrin repeat and SOCS box-containing (ASB) family of proteins. They contain ankyrin repeat sequence and SOCS box domain. The SOCS box serves to couple suppressor of cytokine signalling (SOCS) proteins and their binding partners with the elongin B and C complex, possibly targeting them for degradation. Multiple alternatively spliced transcript variants have been described for this gene but some of the full length sequences are not known.
Source: NCBI Gene 51666 — RefSeq curated summary.
At a glance
- GWAS associations: 10
- Clinical variants (ClinVar): 82 total — 6 pathogenic
- MANE Select transcript:
NM_016116
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:16009 |
| Approved symbol | ASB4 |
| Name | ankyrin repeat and SOCS box containing 4 |
| Location | 7q21.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ASB-4 |
| Ensembl gene | ENSG00000005981 |
| Ensembl biotype | protein_coding |
| OMIM | 605761 |
| Entrez | 51666 |
Gene structure
Transcript identifiers
Ensembl transcripts: 5 — 4 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000257621, ENST00000325885, ENST00000428113, ENST00000896495, ENST00000965611
RefSeq mRNA: 2 — MANE Select: NM_016116
NM_016116, NM_145872
CCDS: CCDS5641, CCDS5642
Canonical transcript exons
ENST00000325885 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000706251 | 95495758 | 95496057 |
| ENSE00000977228 | 95536437 | 95536550 |
| ENSE00001268050 | 95537571 | 95540233 |
| ENSE00001268089 | 95527813 | 95528303 |
| ENSE00003844324 | 95485943 | 95486158 |
Expression profiles
Bgee: expression breadth ubiquitous, 168 present calls, max score 96.66.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.3477 / max 129.6064, expressed in 40 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 79753 | 0.1723 | 30 |
| 79749 | 0.0634 | 8 |
| 79751 | 0.0533 | 13 |
| 79752 | 0.0290 | 14 |
| 79754 | 0.0165 | 9 |
| 79750 | 0.0131 | 4 |
Top tissues by expression
274 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| adrenal tissue | UBERON:0018303 | 96.66 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 94.91 | gold quality |
| right adrenal gland | UBERON:0001233 | 94.32 | gold quality |
| left adrenal gland | UBERON:0001234 | 93.94 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 93.69 | gold quality |
| adrenal cortex | UBERON:0001235 | 93.66 | gold quality |
| adrenal gland | UBERON:0002369 | 92.38 | gold quality |
| biceps brachii | UBERON:0001507 | 90.38 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 90.05 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 89.95 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 88.26 | gold quality |
| vastus lateralis | UBERON:0001379 | 83.56 | gold quality |
| gastrocnemius | UBERON:0001388 | 82.80 | gold quality |
| muscle of leg | UBERON:0001383 | 82.38 | gold quality |
| muscle organ | UBERON:0001630 | 82.33 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 81.96 | gold quality |
| quadriceps femoris | UBERON:0001377 | 81.62 | gold quality |
| endothelial cell | CL:0000115 | 80.02 | gold quality |
| pituitary gland | UBERON:0000007 | 77.65 | gold quality |
| muscle tissue | UBERON:0002385 | 77.42 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 77.32 | gold quality |
| buccal mucosa cell | CL:0002336 | 77.25 | gold quality |
| deltoid | UBERON:0001476 | 77.12 | silver quality |
| islet of Langerhans | UBERON:0000006 | 75.10 | gold quality |
| hair follicle | UBERON:0002073 | 72.41 | gold quality |
| adenohypophysis | UBERON:0002196 | 72.30 | gold quality |
| diaphragm | UBERON:0001103 | 72.24 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 69.95 | gold quality |
| tibialis anterior | UBERON:0001385 | 68.91 | silver quality |
| apex of heart | UBERON:0002098 | 68.88 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 5.36 |
| E-ENAD-27 | yes | 3.85 |
| E-MTAB-7303 | no | 158.01 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
114 targeting ASB4, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-3925-3P | 100.00 | 69.95 | 1237 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-485-3P | 99.98 | 70.68 | 1585 |
| HSA-MIR-539-3P | 99.98 | 70.74 | 1616 |
| HSA-MIR-34C-5P | 99.97 | 70.45 | 1577 |
| HSA-MIR-449B-5P | 99.97 | 70.26 | 1580 |
| HSA-MIR-651-3P | 99.94 | 73.48 | 5177 |
| HSA-MIR-3143 | 99.93 | 71.96 | 3104 |
| HSA-MIR-4760-3P | 99.93 | 70.50 | 2385 |
| HSA-MIR-205-3P | 99.92 | 69.92 | 3165 |
| HSA-MIR-6499-3P | 99.90 | 66.38 | 1212 |
| HSA-MIR-124-3P | 99.89 | 73.74 | 3043 |
| HSA-MIR-506-3P | 99.89 | 73.55 | 3057 |
| HSA-MIR-345-3P | 99.89 | 70.23 | 1421 |
| HSA-MIR-221-3P | 99.86 | 71.56 | 1329 |
| HSA-MIR-222-3P | 99.86 | 71.35 | 1337 |
| HSA-MIR-548AR-3P | 99.85 | 71.26 | 3889 |
| HSA-MIR-4503 | 99.85 | 71.45 | 1869 |
| HSA-MIR-5003-3P | 99.85 | 69.29 | 2517 |
| HSA-MIR-576-5P | 99.84 | 70.46 | 2582 |
| HSA-MIR-548AZ-5P | 99.83 | 69.94 | 3230 |
| HSA-MIR-548T-5P | 99.83 | 69.91 | 3220 |
Literature-anchored findings (GeneRIF, showing 3)
- Based on its differential expression, neuroanatomical distribution and colocalisation, we hypothesise that rat Asb-4 is a gene involved in energy homeostasis. (PMID:15929745)
- This analysis identified an antigen, ASB4, which was processed and presented by a cancer stem cell (CSC) subset but not by non-CSCs. The ASB4 gene was expressed in CSCs of colorectal cancer, but not in cells that had differentiated into non-CSCs.ASB4 is a tumor-associated antigen that can elicit CTL responses specific to CSCs and can discriminate between two cellular subsets of colorectal cancer. (PMID:29371260)
- The Roles of Obesity and ASB4 in Preeclampsia Pathogenesis. (PMID:39201703)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | asb4 | ENSDARG00000034988 |
| mus_musculus | Asb4 | ENSMUSG00000042607 |
| rattus_norvegicus | Asb4 | ENSRNOG00000009197 |
Paralogs (7): ASB3 (ENSG00000115239), ASB15 (ENSG00000146809), ASB10 (ENSG00000146926), ASB16 (ENSG00000161664), ASB18 (ENSG00000182177), MPHOSPH8 (ENSG00000196199), ASB14 (ENSG00000239388)
Protein
Protein identifiers
Ankyrin repeat and SOCS box protein 4 — Q9Y574 (reviewed: Q9Y574)
All UniProt accessions (1): Q9Y574
UniProt curated annotations — full annotation on UniProt →
Function. Probable substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Promotes differentiation and maturation of the vascular lineage by an oxygen-dependent mechanism. Also acts as a negative regulator of GPS1, a component of the COP9 signalosome (CSN) multiprotein complex, thereby inhibiting the serine phosphorylation of IRS1. Regulates IRS4 levels by directing its degradation via ubiquitination and thereby decreases the downstream signal of IRS4. Plays a critical role during early vascular development and proper placentation. Mechanistically, negatively regulates the transcriptional regulator inhibitor of DNA binding 2/ID2 expression through polyubiquitination and proteasome dependent degradation.
Subunit / interactions. Interacts with HIF1AN. Component of an ECS (Elongin BC-CUL2/5-SOCS-box protein) E3 ubiquitin-protein ligase complex formed of CUL2 or CUL5, Elongin BC (ELOB and ELOC), RBX1 and ASB4. Interacts with IRS4. Interacts with ID2.
Subcellular location. Cytoplasm.
Post-translational modifications. Hydroxylation at Asn-246 by HIF1AN may provide an oxygen-dependent regulation mechanism for the function of ASB4 in promoting vascular differentiation.
Domain organisation. The SOCS box domain mediates the interaction with the Elongin BC complex, an adapter module in different E3 ubiquitin-protein ligase complexes.
Pathway. Protein modification; protein ubiquitination.
Similarity. Belongs to the ankyrin SOCS box (ASB) family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9Y574-1 | 1 | yes |
| Q9Y574-2 | 2 |
RefSeq proteins (2): NP_057200, NP_665879 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001496 | SOCS_box | Domain |
| IPR002110 | Ankyrin_rpt | Repeat |
| IPR036036 | SOCS_box-like_dom_sf | Homologous_superfamily |
| IPR036770 | Ankyrin_rpt-contain_sf | Homologous_superfamily |
Pfam: PF07525, PF12796
UniProt features (14 total): repeat 6, region of interest 2, chain 1, site 1, modified residue 1, splice variant 1, sequence variant 1, domain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9Y574-F1 | 92.69 | 0.84 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 256 (essential for interaction with hif1an)
Post-translational modifications (1): 246
Function
Pathways and Gene Ontology
Reactome pathways
7 pathways
| ID | Pathway |
|---|---|
| R-HSA-8951664 | Neddylation |
| R-HSA-983168 | Antigen processing: Ubiquitination & Proteasome degradation |
| R-HSA-1280218 | Adaptive Immune System |
| R-HSA-168256 | Immune System |
| R-HSA-392499 | Metabolism of proteins |
| R-HSA-597592 | Post-translational protein modification |
| R-HSA-983169 | Class I MHC mediated antigen processing & presentation |
MSigDB gene sets: 162 (showing top):
GOBP_REGULATION_OF_VASCULOGENESIS, REACTOME_ADAPTIVE_IMMUNE_SYSTEM, REACTOME_CLASS_I_MHC_MEDIATED_ANTIGEN_PROCESSING_PRESENTATION, REACTOME_ANTIGEN_PROCESSING_UBIQUITINATION_PROTEASOME_DEGRADATION, TAL1ALPHAE47_01, AAAYRNCTG_UNKNOWN, MORF_RAD51L3, GOBP_POSITIVE_REGULATION_OF_CELL_DIFFERENTIATION, TGCTGAY_UNKNOWN, GOBP_PROTEIN_AUTOUBIQUITINATION, WTGAAAT_UNKNOWN, GOBP_BLOOD_VESSEL_MORPHOGENESIS, TGACATY_UNKNOWN, GOBP_POST_TRANSLATIONAL_PROTEIN_MODIFICATION, GOBP_VASCULOGENESIS
GO Biological Process (4): intracellular signal transduction (GO:0035556), protein autoubiquitination (GO:0051865), positive regulation of vasculogenesis (GO:2001214), protein ubiquitination (GO:0016567)
GO Molecular Function (5): ubiquitin-protein transferase activity (GO:0004842), ubiquitin protein ligase binding (GO:0031625), ubiquitin protein ligase activity (GO:0061630), protein binding (GO:0005515), enzyme binding (GO:0019899)
GO Cellular Component (4): cytosol (GO:0005829), Cul2-RING ubiquitin ligase complex (GO:0031462), Cul5-RING ubiquitin ligase complex (GO:0031466), cytoplasm (GO:0005737)
Reactome top-level categories
Rollup of top-5 pathways:
| Category | Pathways |
|---|---|
| Post-translational protein modification | 1 |
| Class I MHC mediated antigen processing & presentation | 1 |
| Immune System | 1 |
| Metabolism of proteins | 1 |
| Adaptive Immune System | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| intracellular anatomical structure | 2 |
| cellular anatomical structure | 2 |
| cullin-RING ubiquitin ligase complex | 2 |
| signal transduction | 1 |
| protein ubiquitination | 1 |
| vasculogenesis | 1 |
| positive regulation of cell differentiation | 1 |
| regulation of vasculogenesis | 1 |
| protein modification by small protein conjugation | 1 |
| ubiquitin-like protein transferase activity | 1 |
| ubiquitin-like protein ligase binding | 1 |
| ubiquitin-protein transferase activity | 1 |
| ubiquitin-like protein ligase activity | 1 |
| binding | 1 |
| protein binding | 1 |
| cytoplasm | 1 |
Protein interactions and networks
STRING
1591 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ASB4 | CISH | Q9NSE2 | 711 |
| ASB4 | H3BTC1 | H3BTC1 | 600 |
| ASB4 | IRS4 | O14654 | 600 |
| ASB4 | PPP1R9A | Q9ULJ8 | 599 |
| ASB4 | SGCE | O43556 | 570 |
| ASB4 | COPG2 | Q9UBF2 | 563 |
| ASB4 | GRB10 | Q13322 | 560 |
| ASB4 | GPS1 | Q13098 | 549 |
| ASB4 | JAK3 | P52333 | 542 |
| ASB4 | TRAPPC9 | Q96Q05 | 507 |
| ASB4 | CASD1 | Q96PB1 | 502 |
| ASB4 | PEG10 | Q86TG7 | 498 |
| ASB4 | ASB6 | Q9NWX5 | 491 |
| ASB4 | BLCAP | P62952 | 476 |
| ASB4 | DNAJB8 | Q8NHS0 | 475 |
IntAct
5 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ASB4 | DNAJB5 | psi-mi:“MI:0914”(association) | 0.530 |
| HSP90AB1 | ASB4 | psi-mi:“MI:0915”(physical association) | 0.400 |
| ASB4 | ZNF195 | psi-mi:“MI:0914”(association) | 0.350 |
| ASB4 | AKAP10 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (49): HIF1AN (Affinity Capture-MS), DNAJB5 (Affinity Capture-MS), DNAJB5 (Affinity Capture-MS), HIF1AN (Affinity Capture-MS), ASB4 (PCA), ASB4 (Affinity Capture-MS), DNAJB5 (Affinity Capture-MS), HIF1AN (Affinity Capture-MS), MARCH7 (Affinity Capture-MS), IQSEC1 (Affinity Capture-MS), HAUS8 (Affinity Capture-MS), ZNF195 (Affinity Capture-MS), RICTOR (Affinity Capture-MS), TUBB8 (Affinity Capture-MS), CUL2 (Affinity Capture-Western)
ESM2 similar proteins: A2AS55, B2RXR6, O15084, O75832, P0C927, Q08DV6, Q0P5B9, Q29RM5, Q2TB02, Q3SX45, Q495B1, Q499M5, Q4V890, Q502K3, Q505D1, Q53RE8, Q5F478, Q5RFS1, Q5U2S6, Q5ZLC8, Q6GPE5, Q6P6B7, Q6P9Z4, Q70X92, Q7T3P8, Q810B6, Q8BTI7, Q8C0T1, Q8C6Y6, Q8K0L0, Q8N8A2, Q8NB46, Q8NI38, Q8WXH4, Q91ZT8, Q96AX9, Q96DX5, Q96NS5, Q96Q27, Q9BSK4
Diamond homologs: A0A0R4IQZ2, Q6ZVZ8, Q8VHA6, Q8VHS5, Q8WXI3, Q91ZT7, Q96NS5, Q9WV71, Q9Y574, Q17QS6, Q862Z2, Q8WWX0, Q9D1A4, Q9WV74, Q9Y576, O35516, Q04721, Q2T9W8, Q3KP44, Q8BLD6, Q9QW30, A6NGH8, Q04749, Q21209, Q4JHE0, Q5RFS1, Q641X1, Q86WC6, Q8UVC1, Q8WXH4, Q9CQ31, Q9D119, Q9FY48
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| ASB4 | “down-regulates quantity by destabilization” | ID2 | polyubiquitination |
Disease & clinical
Clinical variants and AI predictions
ClinVar
82 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 6 |
| Likely pathogenic | 0 |
| Uncertain significance | 70 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (6)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1047880 | GRCh37/hg19 7q21.12-22.1(chr7:87477185-100333327) | Pathogenic |
| 146112 | GRCh38/hg38 7q21.3(chr7:95127070-97873487)x1 | Pathogenic |
| 153321 | GRCh38/hg38 7q21.2-21.3(chr7:92759144-97568646)x1 | Pathogenic |
| 1808653 | GRCh37/hg19 7q21.2-22.1(chr7:92721627-98311537)x1 | Pathogenic |
| 2685252 | GRCh37/hg19 7q21.3(chr7:94813388-96264152)x1 | Pathogenic |
| 976777 | GRCh37/hg19 7q21.3(chr7:93516132-95668733) | Pathogenic |
SpliceAI
716 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:95494630:G:GG | donor_gain | 1.0000 |
| 7:95527808:TATA:T | acceptor_loss | 1.0000 |
| 7:95527809:A:AG | acceptor_gain | 1.0000 |
| 7:95527809:ATAG:A | acceptor_gain | 1.0000 |
| 7:95527809:ATAGG:A | acceptor_gain | 1.0000 |
| 7:95527810:T:G | acceptor_gain | 1.0000 |
| 7:95527810:TA:T | acceptor_loss | 1.0000 |
| 7:95527811:A:AG | acceptor_gain | 1.0000 |
| 7:95527811:AG:A | acceptor_gain | 1.0000 |
| 7:95527811:AGG:A | acceptor_gain | 1.0000 |
| 7:95527811:AGGG:A | acceptor_gain | 1.0000 |
| 7:95527812:G:GC | acceptor_gain | 1.0000 |
| 7:95527812:GG:G | acceptor_gain | 1.0000 |
| 7:95527812:GGG:G | acceptor_gain | 1.0000 |
| 7:95527812:GGGG:G | acceptor_gain | 1.0000 |
| 7:95527812:GGGGC:G | acceptor_gain | 1.0000 |
| 7:95528299:ATAAG:A | donor_loss | 1.0000 |
| 7:95528300:TAAG:T | donor_loss | 1.0000 |
| 7:95528301:AAGG:A | donor_loss | 1.0000 |
| 7:95528302:AGGTG:A | donor_loss | 1.0000 |
| 7:95528303:GGT:G | donor_loss | 1.0000 |
| 7:95528304:G:GA | donor_loss | 1.0000 |
| 7:95528305:T:G | donor_loss | 1.0000 |
| 7:95486156:AAGGT:A | donor_loss | 0.9900 |
| 7:95486159:G:GA | donor_loss | 0.9900 |
| 7:95486160:T:A | donor_loss | 0.9900 |
| 7:95536431:CTGCA:C | acceptor_loss | 0.9900 |
| 7:95536432:TGCA:T | acceptor_loss | 0.9900 |
| 7:95536434:CAG:C | acceptor_loss | 0.9900 |
| 7:95536435:A:C | acceptor_loss | 0.9900 |
AlphaMissense
2823 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:95496011:T:G | C147W | 0.999 |
| 7:95536518:T:A | W354R | 0.999 |
| 7:95536518:T:C | W354R | 0.999 |
| 7:95495763:T:A | W65R | 0.998 |
| 7:95495763:T:C | W65R | 0.998 |
| 7:95495793:T:A | W75R | 0.998 |
| 7:95495793:T:C | W75R | 0.998 |
| 7:95495884:C:A | P105H | 0.998 |
| 7:95495889:G:T | G107W | 0.998 |
| 7:95495890:G:A | G107E | 0.998 |
| 7:95495890:G:T | G107V | 0.998 |
| 7:95496009:T:C | C147R | 0.998 |
| 7:95528169:G:C | D282H | 0.998 |
| 7:95528170:A:T | D282V | 0.998 |
| 7:95495767:T:C | L66S | 0.997 |
| 7:95495888:T:A | N106K | 0.997 |
| 7:95495888:T:G | N106K | 0.997 |
| 7:95495899:C:A | P110H | 0.997 |
| 7:95495899:C:G | P110R | 0.997 |
| 7:95495911:C:A | A114D | 0.997 |
| 7:95495913:T:C | C115R | 0.997 |
| 7:95495914:G:A | C115Y | 0.997 |
| 7:95495915:T:G | C115W | 0.997 |
| 7:95495989:G:T | G140V | 0.997 |
| 7:95496010:G:A | C147Y | 0.997 |
| 7:95528106:T:A | W261R | 0.997 |
| 7:95528106:T:C | W261R | 0.997 |
| 7:95528296:T:C | F324S | 0.997 |
| 7:95486045:T:C | L25P | 0.996 |
| 7:95486141:T:C | L57S | 0.996 |
dbSNP variants (sampled 300 via entrez): RS1000040151 (7:95551692 T>C), RS1000049174 (7:95496745 G>T), RS1000050801 (7:95477174 T>A,C), RS1000056134 (7:95502267 A>G), RS1000110419 (7:95510454 A>G), RS1000115896 (7:95498131 A>G), RS1000118602 (7:95543622 T>C), RS1000223077 (7:95517134 T>C), RS1000267891 (7:95532012 T>A), RS1000293932 (7:95508605 G>A), RS1000308767 (7:95546391 A>C), RS1000375470 (7:95523354 G>A), RS1000400642 (7:95496565 G>A,T), RS1000411815 (7:95545908 C>T), RS1000416205 (7:95515140 A>G,T)
Disease associations
OMIM: gene MIM:605761 | disease phenotypes: MIM:261800, MIM:159900
GenCC curated gene-disease
Mondo (2): isolated Pierre-Robin syndrome (MONDO:0009869), myoclonic dystonia 11 (MONDO:0008044)
Orphanet (3): Lateral facial cleft (Orphanet:141269), Isolated Pierre Robin sequence (Orphanet:718), Myoclonus-dystonia syndrome (Orphanet:36899)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
10 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002783_120 | Body mass index | 5.000000e-08 |
| GCST002783_145 | Body mass index | 2.000000e-06 |
| GCST002783_332 | Body mass index | 2.000000e-06 |
| GCST002985_7 | Middle childhood and early adolescence aggressive behavior | 8.000000e-06 |
| GCST004495_142 | BMI (adjusted for smoking behaviour) | 8.000000e-07 |
| GCST004495_143 | BMI (adjusted for smoking behaviour) | 6.000000e-07 |
| GCST004497_71 | Body mass index (joint analysis main effects and smoking interaction) | 7.000000e-07 |
| GCST004497_72 | Body mass index (joint analysis main effects and smoking interaction) | 2.000000e-06 |
| GCST009391_1456 | Metabolite levels | 8.000000e-06 |
| GCST009391_1861 | Metabolite levels | 6.000000e-06 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004340 | body mass index |
| EFO:0004318 | smoking behavior |
| EFO:0010405 | triacylglycerol 48:2 measurement |
| EFO:0010410 | triacylglycerol 50:3 measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D010855 | Pierre Robin Syndrome | C05.500.460.606; C05.660.207.540.460.606; C07.320.440.606; C07.650.500.460.606; C16.131.621.207.540.460.606; C16.131.850.500.460.606 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
24 total (human), top 24 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, decreases expression | 2 |
| Valproic Acid | increases expression | 2 |
| OTX015 | decreases expression | 1 |
| methyleugenol | decreases expression | 1 |
| propionaldehyde | increases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| benzo(e)pyrene | decreases methylation | 1 |
| pentabromodiphenyl ether | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| entinostat | increases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Fulvestrant | increases methylation | 1 |
| Acetaminophen | decreases expression | 1 |
| Cadmium | decreases expression, increases abundance | 1 |
| Folic Acid | decreases expression | 1 |
| Methapyrilene | decreases methylation | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Urethane | decreases expression | 1 |
| Aflatoxin B1 | increases methylation | 1 |
| Cadmium Chloride | decreases expression, increases abundance | 1 |
| Okadaic Acid | decreases expression | 1 |
Clinical trials (associated diseases)
7 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01690078 | Not specified | COMPLETED | Functional Modeling of the Pediatric Airway |
| NCT02432638 | Not specified | WITHDRAWN | Pierre Robin Sequence Outcome Assessment Multi Institutional Study |
| NCT03423017 | Not specified | COMPLETED | Brainstem Dysfunction Involvement in the Pathogenesis of Pierre Robin Sequence |
| NCT04422067 | Not specified | COMPLETED | Usefulness of Cephalometry in the Second and Third Trimester of Pregnancy in the Diagnosis of Fetal Microretrognathia |
| NCT07257276 | Not specified | ACTIVE_NOT_RECRUITING | 3D-CT-Based Prediction of Difficult Laryngoscopy in Infants With Pierre Robin Sequence |
| NCT07604818 | Not specified | COMPLETED | Comparison of Sucking in Premature Infants and Infants With Pierre Robin Sequence |
| NCT05671068 | Not specified | COMPLETED | EMOTION & COGNITION IN MYOCLONUS DYSTONIA (AGENT10-ECODYST) |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): isolated Pierre-Robin syndrome, myoclonic dystonia 11