ASPA
gene geneOn this page
Also known as ASPACY2
Summary
ASPA (aspartoacylase, HGNC:756) is a protein-coding gene on chromosome 17p13.2, encoding Aspartoacylase (P45381). Catalyzes the deacetylation of N-acetylaspartic acid (NAA) to produce acetate and L-aspartate.
This gene encodes an enzyme that catalyzes the conversion of N-acetyl_L-aspartic acid (NAA) to aspartate and acetate. NAA is abundant in the brain where hydrolysis by aspartoacylase is thought to help maintain white matter. This protein is an NAA scavenger in other tissues. Mutations in this gene cause Canavan disease. Alternatively spliced transcript variants have been found for this gene.
Source: NCBI Gene 443 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Canavan disease (Definitive, ClinGen) — +2 more curated relationships
- GWAS associations: 1
- Clinical variants (ClinVar): 536 total — 63 pathogenic, 92 likely-pathogenic (top 6% of genes corpus-wide)
- GTEx eGene: eQTL in 39 tissues, sQTL in 3 (q < 0.05)
- Phenotypes (HPO): 61
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity no evidence
- Constraint (gnomAD): pLI 0.00 (LoF-tolerant), LOEUF 1.10 (unconstrained)
- MANE Select transcript:
NM_000049
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:756 |
| Approved symbol | ASPA |
| Name | aspartoacylase |
| Location | 17p13.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ASP, ACY2 |
| Ensembl gene | ENSG00000108381 |
| Ensembl biotype | protein_coding |
| OMIM | 608034 |
| Entrez | 443 |
Gene structure
Transcript identifiers
Ensembl transcripts: 12 — 9 protein_coding, 3 nonsense_mediated_decay
MANE Select: ENST00000263080
Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 1: 2, TSL 5: 2
ENST00000263080, ENST00000456349, ENST00000571278, ENST00000577034, ENST00000858436, ENST00001096853, ENST00001121324, ENST00001121325, ENST00001121326, ENST00001127118, ENST00001127119, ENST00001138468
RefSeq mRNA: 2 — MANE Select: NM_000049
NM_000049, NM_001128085
CCDS: CCDS11028
Canonical transcript exons
ENST00000263080 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000669166 | 3489235 | 3489342 |
| ENSE00000669168 | 3494350 | 3494459 |
| ENSE00001116147 | 3475997 | 3476395 |
| ENSE00001923034 | 3498891 | 3503405 |
| ENSE00003474668 | 3483499 | 3483592 |
| ENSE00003477626 | 3481603 | 3481798 |
Expression profiles
Bgee: expression breadth ubiquitous, 238 present calls, max score 97.25.
FANTOM5 (CAGE): breadth broad, TPM avg 3.5357 / max 271.3708, expressed in 322 samples.
Highest expression (Bgee): corpus callosum, nephron tubule, medial globus pallidus, globus pallidus, kidney epithelium.
Genetic regulation across tissues (GTEx eQTL / sQTL)
ASPA is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 39 tissues and its splicing (sQTL) in 3 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.
showing 20 of 42 significant tissue × QTL associations:
| Tissue | QTL | q-value | Slope | Lead variant |
|---|---|---|---|---|
| Nerve Tibial | eqtl | 9.5e-38 | -0.59 | 17:3531768:A:G |
| Heart Left Ventricle | eqtl | 1.3e-18 | -0.41 | 17:3476521:T:C |
| Heart Atrial Appendage | eqtl | 2.2e-16 | -0.30 | 17:3476521:T:C |
| Adrenal Gland | eqtl | 1.6e-15 | -0.47 | 17:3513015:A:C |
| Artery Tibial | eqtl | 2.3e-15 | -0.28 | 17:3530249:A:G |
| Skin Not Sun Exposed Suprapubic | eqtl | 1.4e-10 | -0.30 | 17:3530821:C:T |
| Brain Cerebellum | eqtl | 2.1e-10 | -0.51 | 17:3534518:G:C |
| Thyroid | eqtl | 3.3e-10 | -0.21 | 17:3530301:C:T |
| Artery Aorta | eqtl | 1.0e-09 | -0.30 | 17:3483264:T:C |
| Nerve Tibial | sqtl | 1.2e-09 | -0.46 | 17:3492694:A:G |
| Adipose Visceral Omentum | eqtl | 7.3e-09 | -0.22 | 17:3530249:A:G |
| Brain Spinal cord cervical c-1 | eqtl | 1.2e-07 | -0.70 | 17:3531445:C:CCAGGA |
| Brain Cerebellar Hemisphere | eqtl | 2.6e-07 | -0.43 | 17:3534518:G:C |
| Esophagus Muscularis | eqtl | 6.2e-07 | -0.31 | 17:3527865:C:G |
| Stomach | eqtl | 6.6e-07 | -0.30 | 17:3530301:C:T |
| Pituitary | eqtl | 7.9e-07 | -0.24 | 17:3475582:C:T |
| Pancreas | eqtl | 9.4e-07 | +0.28 | 17:3512878:A:G |
| Skin Sun Exposed Lower leg | eqtl | 5.1e-06 | -0.22 | 17:3541658:A:C |
| Brain Hypothalamus | eqtl | 6.6e-06 | -0.37 | 17:3531768:A:G |
| Brain Hippocampus | eqtl | 4.3e-05 | -0.27 | 17:3531445:C:CCAGGA |
FANTOM5 promoters
6 alternative TSS:
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 158870 | 3.1923 | 306 |
| 158869 | 0.1427 | 68 |
| 158871 | 0.0949 | 45 |
| 158874 | 0.0569 | 35 |
| 158873 | 0.0259 | 14 |
| 158872 | 0.0230 | 12 |
Top tissues by expression
showing 100 of 293 tissues by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| corpus callosum | UBERON:0002336 | 97.25 | gold quality |
| nephron tubule | UBERON:0001231 | 95.27 | gold quality |
| medial globus pallidus | UBERON:0002477 | 92.90 | gold quality |
| globus pallidus | UBERON:0001875 | 92.56 | gold quality |
| kidney epithelium | UBERON:0004819 | 92.20 | gold quality |
| jejunal mucosa | UBERON:0000399 | 92.14 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 92.12 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 90.97 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 90.61 | gold quality |
| endothelial cell | CL:0000115 | 90.47 | gold quality |
| spinal cord | UBERON:0002240 | 89.85 | gold quality |
| inferior olivary complex | UBERON:0002127 | 89.81 | gold quality |
| renal glomerulus | UBERON:0000074 | 89.66 | gold quality |
| substantia nigra | UBERON:0002038 | 89.36 | gold quality |
| postcentral gyrus | UBERON:0002581 | 89.12 | gold quality |
| metanephric glomerulus | UBERON:0004736 | 88.94 | gold quality |
| midbrain | UBERON:0001891 | 88.77 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 88.67 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 88.64 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 88.45 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 87.94 | gold quality |
| Ammon’s horn | UBERON:0001954 | 87.80 | gold quality |
| parietal lobe | UBERON:0001872 | 87.44 | gold quality |
| adult organism | UBERON:0007023 | 87.29 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 86.65 | gold quality |
| tibial nerve | UBERON:0001323 | 86.33 | gold quality |
| kidney | UBERON:0002113 | 86.03 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 85.92 | gold quality |
| cranial nerve II | UBERON:0000941 | 85.48 | gold quality |
| medulla oblongata | UBERON:0001896 | 85.38 | gold quality |
| putamen | UBERON:0001874 | 85.27 | gold quality |
| cortex of kidney | UBERON:0001225 | 85.15 | gold quality |
| amygdala | UBERON:0001876 | 84.89 | gold quality |
| pons | UBERON:0000988 | 84.80 | gold quality |
| duodenum | UBERON:0002114 | 84.47 | gold quality |
| dorsal plus ventral thalamus | UBERON:0001897 | 84.14 | gold quality |
| jejunum | UBERON:0002115 | 84.02 | gold quality |
| parietal pleura | UBERON:0002400 | 83.54 | gold quality |
| CA1 field of hippocampus | UBERON:0003881 | 83.48 | gold quality |
| temporal lobe | UBERON:0001871 | 83.12 | gold quality |
| hypothalamus | UBERON:0001898 | 82.97 | gold quality |
| dorsal motor nucleus of vagus nerve | UBERON:0002870 | 82.57 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 82.49 | gold quality |
| sperm | CL:0000019 | 82.41 | silver quality |
| caudate nucleus | UBERON:0001873 | 82.36 | gold quality |
| ventral tegmental area | UBERON:0002691 | 82.25 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 82.02 | gold quality |
| entorhinal cortex | UBERON:0002728 | 81.88 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 81.31 | gold quality |
| middle frontal gyrus | UBERON:0002702 | 80.95 | gold quality |
| prefrontal cortex | UBERON:0000451 | 80.66 | gold quality |
| metanephros | UBERON:0000081 | 80.58 | gold quality |
| telencephalon | UBERON:0001893 | 80.53 | gold quality |
| sural nerve | UBERON:0015488 | 80.20 | gold quality |
| adipose tissue | UBERON:0001013 | 79.83 | gold quality |
| pleura | UBERON:0000977 | 79.72 | gold quality |
| male germ cell | CL:0000015 | 79.70 | silver quality |
| hindlimb stylopod muscle | UBERON:0004252 | 79.61 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 79.59 | gold quality |
| nucleus accumbens | UBERON:0001882 | 78.97 | gold quality |
| cerebral cortex | UBERON:0000956 | 78.95 | gold quality |
| frontal cortex | UBERON:0001870 | 78.93 | gold quality |
| biceps brachii | UBERON:0001507 | 78.78 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 78.68 | gold quality |
| connective tissue | UBERON:0002384 | 78.65 | gold quality |
| occipital lobe | UBERON:0002021 | 78.64 | gold quality |
| renal medulla | UBERON:0000362 | 78.42 | gold quality |
| primary visual cortex | UBERON:0002436 | 78.28 | gold quality |
| forebrain | UBERON:0001890 | 78.24 | gold quality |
| right frontal lobe | UBERON:0002810 | 78.09 | gold quality |
| vastus lateralis | UBERON:0001379 | 78.05 | silver quality |
| omental fat pad | UBERON:0010414 | 77.97 | gold quality |
| peritoneum | UBERON:0002358 | 77.92 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 77.92 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 77.84 | gold quality |
| central nervous system | UBERON:0001017 | 77.82 | gold quality |
| olfactory bulb | UBERON:0002264 | 77.74 | gold quality |
| upper leg skin | UBERON:0004262 | 77.62 | gold quality |
| brain | UBERON:0000955 | 77.43 | gold quality |
| neocortex | UBERON:0001950 | 77.32 | gold quality |
| Brodmann (1909) area 10 | UBERON:0013541 | 76.93 | gold quality |
| skin of hip | UBERON:0001554 | 76.84 | gold quality |
| quadriceps femoris | UBERON:0001377 | 76.81 | silver quality |
| metanephros cortex | UBERON:0010533 | 76.46 | gold quality |
| orbitofrontal cortex | UBERON:0004167 | 76.30 | gold quality |
| rectum | UBERON:0001052 | 76.24 | gold quality |
| colonic epithelium | UBERON:0000397 | 76.17 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 76.13 | silver quality |
| small intestine | UBERON:0002108 | 76.03 | gold quality |
| seminal vesicle | UBERON:0000998 | 75.92 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 75.90 | gold quality |
| cingulate cortex | UBERON:0003027 | 75.76 | gold quality |
| urinary bladder | UBERON:0001255 | 75.64 | gold quality |
| muscle organ | UBERON:0001630 | 75.62 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 75.62 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 75.62 | gold quality |
| muscle of leg | UBERON:0001383 | 75.36 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 75.09 | gold quality |
| tibia | UBERON:0000979 | 74.94 | gold quality |
| left uterine tube | UBERON:0001303 | 74.81 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 6.23 |
| E-MTAB-6379 | no | 76.50 |
| E-MTAB-9543 | no | 1.22 |
HPA expression
RNA tissue specificity: Tissue enhanced
showing 60 of 80 HPA tissues / cells by nTPM:
| Tissue / cell | Axis | nTPM | Protein (IHC) |
|---|---|---|---|
| Corpus callosum | tissue | 106.9 | |
| Spinal cord | tissue | 48.8 | |
| Medulla oblongata | tissue | 48.4 | |
| Midbrain | tissue | 48.1 | |
| Substantia nigra | tissue | 45.6 | |
| Caudate putamen | tissue | 40.4 | |
| Periaqueductal gray | tissue | 38.9 | |
| Nucleus accumbens | tissue | 38.1 | |
| Superior colliculi | tissue | 37.1 | |
| Thalamus | tissue | 35.7 | |
| Kidney | tissue | 35.6 | high |
| Putamen | tissue | 35.5 | |
| Pons | tissue | 34.5 | |
| Ventral forebrain | tissue | 30.7 | |
| Hippocampus | tissue | 29.9 | medium |
| Hypothalamus | tissue | 27.2 | |
| Hippocampal formation | tissue | 26.4 | |
| Postcentral gyrus | tissue | 24.9 | |
| Locus coeruleus | tissue | 24.3 | |
| Septum | tissue | 23.7 | |
| Amygdala | tissue | 20.4 | |
| Cerebral cortex | tissue | 19.6 | high |
| Retrosplenial cortex | tissue | 19.6 | |
| Frontal cortex | tissue | 18.7 | |
| Occipital cortex | tissue | 17.6 | |
| Choroid plexus | tissue | 17.1 | |
| Somatosensory cortex | tissue | 15.8 | |
| Insular cortex | tissue | 15.3 | |
| Motor cortex | tissue | 15.2 | |
| Olfactory bulb | tissue | 15.2 | |
| Small intestine | tissue | 14.7 | low |
| Retrosplenial and cingulate cortex | tissue | 14.7 | |
| Prefrontal cortex | tissue | 14.6 | |
| Basal ganglia | tissue | 14.6 | medium |
| Cerebellum | tissue | 14.4 | high |
| Tongue | tissue | 14.0 | |
| Liver | tissue | 14.0 | low |
| Temporal cortex | tissue | 13.2 | |
| Adipose tissue | tissue | 13.0 | not detected |
| Entorhinal cortex | tissue | 12.8 | |
| Skeletal muscle | tissue | 11.1 | low |
| Duodenum | tissue | 10.6 | low |
| Testis | tissue | 6.2 | medium |
| Cervix | tissue | 5.9 | not detected |
| Urinary bladder | tissue | 5.8 | low |
| Epididymis | tissue | 5.5 | not detected |
| Spleen | tissue | 5.1 | not detected |
| Skin 1 | tissue | 4.9 | not detected |
| Fallopian tube | tissue | 4.9 | not detected |
| Seminal vesicle | tissue | 4.7 | not detected |
| Esophagus | tissue | 4.6 | not detected |
| Rectum | tissue | 4.6 | low |
| Endometrium 1 | tissue | 4.2 | not detected |
| Stomach 1 | tissue | 4.1 | low |
| Adrenal gland | tissue | 4.1 | low |
| Vagina | tissue | 4.0 | not detected |
| Colon | tissue | 3.8 | low |
| Prostate | tissue | 3.8 | not detected |
| Gallbladder | tissue | 3.4 | not detected |
| Breast | tissue | 3.3 | not detected |
Brain sub-regions (HPA Brain Atlas): detected in 190; highest nTPM — Parieto-temporal junction (white matter) (125.1), Temporal white matter (119.3), Corpus callosum, genu (white matter) (113.1), Area striata (white matter) (112.2), White matter (106.9).
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
Targeting ASPA by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).
23 miRNAs:
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-568 | 99.98 | 69.86 | 2084 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-3910 | 99.95 | 71.13 | 2227 |
| HSA-MIR-218-5P | 99.93 | 72.22 | 2103 |
| HSA-MIR-205-3P | 99.92 | 69.92 | 3165 |
| HSA-MIR-124-3P | 99.89 | 73.74 | 3043 |
| HSA-MIR-506-3P | 99.89 | 73.55 | 3057 |
| HSA-MIR-221-3P | 99.86 | 71.56 | 1329 |
| HSA-MIR-222-3P | 99.86 | 71.35 | 1337 |
| HSA-MIR-3714 | 99.71 | 70.74 | 2671 |
| HSA-MIR-6516-3P | 99.65 | 68.57 | 1238 |
| HSA-MIR-4687-3P | 99.48 | 66.41 | 968 |
| HSA-MIR-4427 | 99.34 | 70.33 | 1854 |
| HSA-MIR-138-2-3P | 98.91 | 68.33 | 1643 |
| HSA-MIR-4477A | 98.83 | 69.75 | 2952 |
| HSA-MIR-96-3P | 97.47 | 68.03 | 839 |
| HSA-MIR-3139 | 96.68 | 66.77 | 652 |
| HSA-MIR-28-5P | 96.16 | 66.12 | 579 |
| HSA-MIR-708-5P | 96.16 | 66.12 | 576 |
| HSA-MIR-675-3P | 95.77 | 69.27 | 675 |
Functional genomics
gnomAD constraint: pLI 4.28e-05, LOEUF 1.1, missense Z 1.25 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD
Regional missense constraint (gnomAD RMC): no regional variation along ENST00000263080 — one region, missense o/e 0.86.
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 20)
- the ASPA gene was analysed in 22 unrelated non-Jewish patients with Canavan disease, and 24 different mutations were found (PMID:12638939)
- Mild-onset presentation of Canavan’s disease associated with novel G212A point mutation in aspartoacylase gene (PMID:16437572)
- molecular weight of the purified enzyme is higher than predicted, suggesting the presence of post-translational modifications. Deglycosylation of aspartoacylase or mutation at glycosylation site causes decreased enzyme stability and catalytic activity (PMID:16669630)
- a green fluorescent protein-human ASPA fusion protein larger than the permissible size for the nuclear pore complex was enzymatically active and showed mixed nuclear-cytoplasmic distribution. (PMID:16935940)
- The finding that wild-type and Glu178Asp have the same K(m) but different k(cat) values confirms the idea that the carboxylate group contributes importantly to the enzymatic activity of aspartoacylase. (PMID:17027983)
- the N-terminal domain of aspartoacylase adopts a protein fold similar to that of zinc-dependent hydrolases related to carboxypeptidases A (PMID:17194761)
- These results show that aspartoacylase is a member of the caboxypeptidase A family and offer novel explanations for most loss-of-function aspartoacylase mutations associated with Canavan Disease. (PMID:17391648)
- New structure of human aspartoacylase complexed with a catalytic intermediate analogue, N-phosphonomethyl- l-aspartate, supports a carboxypeptidase-type mechanism for hydrolysis of the amide bond of the substrate, N-acetyl- l-aspartate. (PMID:18293939)
- We report on an Italian female patient with Canavan disease due to a missense mutation of the aspartoacylase gene and a 17p13.3 chromosomal microdeletion (PMID:22019069)
- Gene ASPA (NM_000049) was undertaken to sequence for mutation analysis. (PMID:22219087)
- a novel mutation Y88X within the aspartoacylase gene in a consanguineous family with an affected child diagnosed as Canavan disease. (PMID:22468686)
- Human aspartoacylase gene expression was high not only in brain and kidney, but also in lung and liver. (PMID:22750302)
- This is the first case report of ASPA mutation studies in Canavan disease from Indian subcontinent. (PMID:22878930)
- report of 2 Egyptian sibling patients suspected of Canavan disease (CD); study revealed homozygosity for substitution T530C (Ile177Thr) in exon 4 of the ASPA gene in both sibs; substitution T530C (Ile177Thr) results in a novel missense mutation causing a CD phenotype with severe clinical characteristics (PMID:24036223)
- Definitive evidence is presented to show that the recombinantly-expressed human aspartoacylase is not a glycoprotein. (PMID:24632142)
- Four ASPA missense mutations associated with Canavan disease are structurally characterized. (PMID:25003821)
- Allosteric Control of N-Acetyl-Aspartate Hydrolysis by the Y231C and F295S Mutants of Human Aspartoacylase (PMID:30431265)
- In one case, the homozygous pathogenic variant NM_000049.2:c.914C>A;p.Ala305Glu, which is previously reported in ClinVar, in the gene ASPA was identified causing Canavan disease. In the second case, the homozygous novel variant NM_000487.5:c.256C>G;p.Arg86Gly in the gene ARSA was identified causing metachromatic leukodystrophy. (PMID:30834272)
- Mapping the degradation pathway of a disease-linked aspartoacylase variant. (PMID:33914734)
- Aspartoacylase promotes the process of tumour development and is associated with immune infiltrates in gastric cancer. (PMID:37391709)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | aspa | ENSDARG00000005154 |
| mus_musculus | Aspa | ENSMUSG00000020774 |
| rattus_norvegicus | Aspa | ENSRNOG00000019659 |
Paralogs (1): ACY3 (ENSG00000132744)
Mouse-model phenotypes
Observed phenotypes of the mouse ortholog (MGI:87914) from MGI (Alliance of Genome Resources) — knockout/mutant phenotypes, ranked by annotation count. 62 distinct phenotype terms.
| Mouse phenotype (MP) | Records |
|---|---|
| tremors | 5 |
| decreased locomotor activity | 5 |
| impaired coordination | 5 |
| spongiform encephalopathy | 5 |
| decreased body weight | 4 |
| ataxia | 4 |
| abnormal gait | 4 |
| brain vacuoles | 4 |
| decreased body size | 3 |
| megacephaly | 2 |
| hyperactivity | 2 |
| decreased startle reflex | 2 |
| seizures | 2 |
| premature death | 2 |
| abnormal brain morphology | 2 |
| decreased vertical activity | 2 |
| astrocytosis | 2 |
| lethargy | 2 |
| axon degeneration | 2 |
| decreased bone mineral density | 1 |
| muscle weakness | 1 |
| paralysis | 1 |
| abnormal diencephalon morphology | 1 |
| abnormal myelination | 1 |
| demyelination | 1 |
+37 more (showing top 25).
Additional cross-species homologs
Sequence homologs in species beyond Ensembl Compara’s model organisms, by Diamond local protein alignment (% sequence identity; best hit per species). Lower-identity rows are more distant homologs. The matched accessions’ gene symbols aren’t in biobtree yet, so each row shows the UniProt accession.
| Organism | UniProt | Identity | Method |
|---|---|---|---|
| Prochlorococcus marinus str. NATL1A | A2C055 | 99.3% | Diamond |
| Prochlorococcus marinus str. NATL2A | Q46HE9 | 99.3% | Diamond |
| Pongo abelii | Q5R9E0 | 99.0% | Diamond |
| Macaca fascicularis | Q60HH2 | 97.8% | Diamond |
| Sus scrofa | B1PK17 | 95.2% | Diamond |
| Bos taurus | P46446 | 95.2% | Diamond |
| Trichormus variabilis ATCC 29413 | Q3MC79 | 94.8% | Diamond |
| Nostoc sp. PCC 7120 = FACHB-418 | Q8YQC1 | 94.8% | Diamond |
| Prochlorococcus marinus str. AS9601 | A2BP19 | 91.4% | Diamond |
| Prochlorococcus marinus str. MIT 9215 | A8G2N0 | 91.4% | Diamond |
| Xenopus laevis | A0JMS7 | 90.4% | Diamond |
| Xenopus tropicalis | Q5BJ91 | 90.4% | Diamond |
| Prochlorococcus marinus str. MIT 9301 | A3PAU1 | 90.0% | Diamond |
| Prochlorococcus marinus str. MIT 9312 | Q31CV9 | 87.7% | Diamond |
| Prochlorococcus marinus str. MIT 9515 | A2BUK0 | 79.9% | Diamond |
| Prochlorococcus marinus subsp. pastoris str. CCMP1986 | P59830 | 79.9% | Diamond |
| Synechococcus sp. CC9605 | Q3AM91 | 64.0% | Diamond |
| Synechococcus sp. CC9902 | Q3AV13 | 64.0% | Diamond |
| Parasynechococcus marenigrum WH 8102 | P59829 | 63.2% | Diamond |
| Prochlorococcus marinus str. MIT 9313 | Q7V5L6 | 58.1% | Diamond |
| Prochlorococcus marinus subsp. marinus str. CCMP1375 | P72208 | 56.2% | Diamond |
| Acaryochloris marina MBIC11017 | B0C2K7 | 55.9% | Diamond |
| Trichodesmium erythraeum IMS101 | Q10VR3 | 55.9% | Diamond |
| Synechocystis sp. PCC 6803 substr. Kazusa | P73211 | 42.2% | Diamond |
Genomic neighbors (locus context)
Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).
| Symbol | Type | Entrez |
|---|---|---|
| CTNS | protein-coding | 1497 |
| TRPV3 | protein-coding | 162514 |
| SHPK | protein-coding | 23729 |
| TRPV1 | protein-coding | 7442 |
| SPATA22 | protein-coding | 84690 |
| OR1E2 | protein-coding | 8388 |
| OR3A3 | protein-coding | 8392 |
| P2RX5-TAX1BP3 | ncRNA | 100533970 |
| TAX1BP3 | protein-coding | 30851 |
| OR1E1 | protein-coding | 8387 |
| OR3A2 | protein-coding | 4995 |
| OR1R1 | protein-coding | 9596 |
Protein
Protein identifiers
Aspartoacylase — P45381 (reviewed: P45381)
Alternative names: Aminoacylase-2
All UniProt accessions (4): P45381, I3L0T3, I3L4M0, Q6FH48
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the deacetylation of N-acetylaspartic acid (NAA) to produce acetate and L-aspartate. NAA occurs in high concentration in brain and its hydrolysis NAA plays a significant part in the maintenance of intact white matter. In other tissues it acts as a scavenger of NAA from body fluids.
Subunit / interactions. Homodimer.
Subcellular location. Cytoplasm. Nucleus.
Tissue specificity. Brain white matter, skeletal muscle, kidney, adrenal glands, lung and liver.
Disease relevance. Canavan disease (CAND) [MIM:271900] A rare neurodegenerative condition of infancy or childhood characterized by white matter vacuolization and demyelination that gives rise to a spongy appearance. The clinical features are onset in early infancy, atonia of neck muscles, hypotonia, hyperextension of legs and flexion of arms, blindness, severe mental defect, megalocephaly, and death by 18 months on the average. The disease is caused by variants affecting the gene represented in this entry.
Cofactor. Binds 1 zinc ion per subunit.
Similarity. Belongs to the AspA/AstE family. Aspartoacylase subfamily.
RefSeq proteins (2): NP_000040, NP_001121557 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR007036 | Aste_AspA_hybrid_dom | Domain |
| IPR016708 | Aspartoacylase | Family |
| IPR050178 | AspA/AstE_fam | Family |
| IPR055438 | AstE_AspA_cat | Domain |
Pfam: PF04952, PF24827
Enzyme classification (BRENDA)
- EC 3.5.1.15 — aspartoacylase (BRENDA: 16 organisms, 65 substrates, 14 inhibitors, 22 Km, 13 kcat entries)
Substrate kinetics (BRENDA)
11 substrates with measured Km, best-characterized 11. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| N-ACETYLASPARTIC ACID | 0.12–0.36 | 4 |
| N-ACETYLASPARTATE | 0.163–1.69 | 2 |
| N-ACYL L-ASPARTIC ACID | 0.2 | 2 |
| N-ACYL-L-ASPARTIC ACID | 0.85–5.1 | 2 |
| N-TRIFLUOROACETYLASPARTIC ACID | 0.15–0.21 | 2 |
| N-ACETYL-L-ASPARTATE | 0.36 | 1 |
| N-ACETYL-L-ASPARTIC ACID | 0.1 | 1 |
| N-CHLOROACETYL-L-ASPARTATE | 0.59 | 1 |
| N-DICHLOROACETYL-L-ASPARTATE | 0.23 | 1 |
| N-FORMYL-L-ASPARTATE | 0.95 | 1 |
| N-TRIFLUOROACETYL-L-ASPARTATE | 0.21 | 1 |
Catalyzed reactions (Rhea)
- an N-acyl-L-aspartate + H2O = a carboxylate + L-aspartate (RHEA:10872)
- N-acetyl-L-aspartate + H2O = L-aspartate + acetate (RHEA:59408)
UniProt features (96 total): sequence variant 44, strand 19, helix 11, binding site 9, mutagenesis site 8, turn 2, chain 1, active site 1, site 1
Structure
Experimental structures (PDB)
8 structures by resolution:
| PDB | Title | Method | Resolution (Å) |
|---|---|---|---|
| 4MXU | Human brain aspartoacylase mutant K213E complex with intermediate analog … | X-RAY DIFFRACTION | 2.6 |
| 2O4H | Human brain aspartoacylase complex with intermediate analog … | X-RAY DIFFRACTION | 2.7 |
| 2O53 | Crystal structure of apo-Aspartoacylase from human brain | X-RAY DIFFRACTION | 2.7 |
| 2I3C | Crystal Structure of an Aspartoacylase from Homo Sapiens | X-RAY DIFFRACTION | 2.8 |
| 2Q51 | Ensemble refinement of the protein crystal structure of an aspartoacylase from Homo … | X-RAY DIFFRACTION | 2.8 |
| 4MRI | Human brain aspartoacylase mutant F295S complex with intermediate analog … | X-RAY DIFFRACTION | 2.8 |
| 4TNU | Human brain aspartoacylase mutant Y231C complex with intermediate analog … | X-RAY DIFFRACTION | 2.9 |
| 4NFR | Human brain aspartoacylase mutant E285A complex with intermediate analog … | X-RAY DIFFRACTION | 3 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P45381-F1 | 96.14 | 0.94 |
Human Protein Atlas
Protein class: Enzymes, ENZYME proteins, Hydrolases, Metabolic proteins, Predicted intracellular proteins, Disease related genes, Potential drug targets, Human disease related genes, Congenital disorders of metabolism, Congenital disorders of amino acid metabolism
Protein evidence: Evidence at protein level
Subcellular location (HPA, imaging): cytosol
Antibody reliability (HPA): IH enhanced · IF supported
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (2)
| Position | Role |
|---|---|
| 178 | proton donor/acceptor |
| 63 | transition state stabilizer |
Ligand- & substrate-binding residues (9)
| Position | Role |
|---|---|
| 288 | N-acetyl-L-aspartate |
| 21 | Zn(2+) |
| 24 | Zn(2+) |
| 63 | N-acetyl-L-aspartate |
| 70 | N-acetyl-L-aspartate |
| 71 | N-acetyl-L-aspartate |
| 116 | Zn(2+) |
| 164 | N-acetyl-L-aspartate |
| 168 | N-acetyl-L-aspartate |
Mutagenesis-validated functional residues (8)
| Position | Phenotype |
|---|---|
| 71 | reduces activity by 99%. |
| 164 | reduces activity by 99%. |
| 168 | reduces activity by 99%. |
| 178 | reduces activity by 99%. |
| 178 | abolishes enzymatic activity. |
| 285 | 5-fold decrease in activity. |
| 288 | reduces activity by 99%. |
Function
Pathways and Gene Ontology
Reactome pathways
1 curated (TAS) of 3; 0 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).
3 pathways:
| ID | Pathway | Evidence |
|---|---|---|
| R-HSA-8963693 | Aspartate and asparagine metabolism | curated |
| R-HSA-1430728 | Metabolism | — |
| R-HSA-71291 | Metabolism of amino acids and derivatives | — |
MSigDB gene sets: 257 (showing top):
JAEGER_METASTASIS_DN, GOBP_ALPHA_AMINO_ACID_METABOLIC_PROCESS, ASTON_MAJOR_DEPRESSIVE_DISORDER_DN, HNF1_Q6, GOBP_MONOCARBOXYLIC_ACID_METABOLIC_PROCESS, CAGCTG_AP4_Q5, GOBP_DICARBOXYLIC_ACID_METABOLIC_PROCESS, SRF_Q5_01, CAIRO_HEPATOBLASTOMA_CLASSES_DN, SRF_C, KEGG_HISTIDINE_METABOLISM, TGCTGAY_UNKNOWN, IRF1_Q6, HFH8_01, WTGAAAT_UNKNOWN
GO Biological Process (2): acetate metabolic process (GO:0006083), aspartate metabolic process (GO:0006531)
GO Molecular Function (7): hydrolase activity, acting on ester bonds (GO:0016788), hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides (GO:0016811), aspartoacylase activity (GO:0019807), identical protein binding (GO:0042802), metal ion binding (GO:0046872), protein binding (GO:0005515), hydrolase activity (GO:0016787)
GO Cellular Component (3): nucleus (GO:0005634), cytosol (GO:0005829), cytoplasm (GO:0005737)
Reactome top-level categories
2 top-level categories:
| Category | Pathways |
|---|---|
| Metabolism of amino acids and derivatives | 1 |
| Metabolism | 1 |
GO top-level categories
14 GO namespaces:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| monocarboxylic acid metabolic process | 1 |
| amino acid metabolic process | 1 |
| dicarboxylic acid metabolic process | 1 |
| hydrolase activity | 1 |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 1 |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 1 |
| protein binding | 1 |
| cation binding | 1 |
| binding | 1 |
| catalytic activity | 1 |
| intracellular membrane-bounded organelle | 1 |
| cytoplasm | 1 |
| intracellular anatomical structure | 1 |
Experimentally-supported GO annotations
GO terms backed by direct experimental evidence (ECO experimental codes) — 3 of 12 annotations. The rest are phylogenetic / computational / electronic (IEA).
3 experimentally-supported GO terms:
| GO term | NS | Evidence |
|---|---|---|
| cytosol | CC | direct assay |
| aspartoacylase activity | MF | direct assay |
| identical protein binding | MF | physical interaction |
Protein interactions and networks
STRING
showing 15 of 578 interactions by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ASPA | ACY1 | Q03154 | 965 |
| ASPA | ASPNAT | Q8N9F0 | 782 |
| ASPA | APEH | P13798 | 674 |
| ASPA | CNP | P09543 | 594 |
| ASPA | ARSA | P15289 | 491 |
| ASPA | MBP | P02686 | 483 |
| ASPA | MAL | P21145 | 469 |
| ASPA | SHPK | Q9UHJ6 | 465 |
| ASPA | SUMF1 | Q8NBK3 | 463 |
| ASPA | SPATA22 | Q8NHS9 | 444 |
| ASPA | EIF2B2 | P49770 | 435 |
| ASPA | OLIG2 | Q13516 | 423 |
| ASPA | SPHK1 | Q9NYA1 | 386 |
| ASPA | CPA6 | Q8N4T0 | 363 |
| ASPA | TAF6 | P49848 | 360 |
IntAct
Human interaction partners of ASPA in IntAct, one row per partner (best MIscore; records = supporting IntAct interaction records).
10 partners by confidence:
| Partner | Interaction type | MIscore | Records |
|---|---|---|---|
| ACY3 | physical association | 0.810 | 15 |
| KEAP1 | physical association | 0.600 | 4 |
| COPS3 | physical association | 0.560 | 3 |
| DUSP29 | physical association | 0.560 | 3 |
| PIAS1 | physical association | 0.560 | 3 |
| UBQLN2 | physical association | 0.560 | 3 |
| UBQLN3 | physical association | 0.560 | 3 |
| UBQLNL | physical association | 0.560 | 3 |
| PGK2 | association | 0.350 | 1 |
| HUNK | physical association | 0.000 | 1 |
BioGRID (10 interactions; top human partners by supporting records): ACY3 (Two-hybrid; 3 records), DUPD1 (Two-hybrid), HUNK (Two-hybrid), PGK2 (Affinity Capture-MS), PRNP (Affinity Capture-MS), RUFY1 (Affinity Capture-MS), WASL (Affinity Capture-MS)
SIGNOR signaling
3 signaling interactions:
| A | Effect | B | Mechanism |
|---|---|---|---|
| ASPA | “down-regulates quantity” | N-acetyl-L-aspartate(2-) | “chemical modification” |
| ASPA | “up-regulates quantity” | “acetic acid” | “chemical modification” |
| ASPA | “up-regulates quantity” | L-aspartate(1-) | “chemical modification” |
Disease & clinical
Genetic variants
Variant evidence for ASPA: 536 ClinVar records (155 pathogenic / likely pathogenic); 1 GWAS association. Per-variant detail is on Sugi Variant.
ClinVar
536 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 63 |
| Likely pathogenic | 92 |
| Uncertain significance | 140 |
| Likely benign | 169 |
| Benign | 13 |
Top pathogenic / likely-pathogenic (15)
Showing the 15 best-reviewed of 155 pathogenic / likely-pathogenic ClinVar records, ranked by ClinVar review status (expert panel → multiple submitters → single submitter), then by number of submitting labs.
| Variant ID | HGVS | Classification | Review | Submitters |
|---|---|---|---|---|
| 2607 | NM_000049.4(ASPA):c.914C>A (p.Ala305Glu) | Pathogenic | criteria provided, multiple submitters, no conflicts | 20 |
| 2609 | NM_000049.4(ASPA):c.693C>A (p.Tyr231Ter) | Pathogenic | criteria provided, multiple submitters, no conflicts | 18 |
| 370554 | NM_000049.4(ASPA):c.244dup (p.Met82fs) | Pathogenic | criteria provided, multiple submitters, no conflicts | 10 |
| 2608 | NM_000049.4(ASPA):c.654C>A (p.Cys218Ter) | Pathogenic | criteria provided, multiple submitters, no conflicts | 8 |
| 188803 | NM_000049.4(ASPA):c.859G>A (p.Ala287Thr) | Pathogenic | criteria provided, multiple submitters, no conflicts | 8 |
| 188940 | NM_000049.4(ASPA):c.541C>A (p.Pro181Thr) | Pathogenic | criteria provided, multiple submitters, no conflicts | 7 |
| 189005 | NM_000049.4(ASPA):c.244_245del (p.Met82fs) | Pathogenic | criteria provided, multiple submitters, no conflicts | 4 |
| 662022 | NM_000049.4(ASPA):c.550C>T (p.Gln184Ter) | Pathogenic | criteria provided, multiple submitters, no conflicts | 4 |
| 551932 | NM_000049.4(ASPA):c.382del (p.Glu129fs) | Pathogenic | criteria provided, multiple submitters, no conflicts | 3 |
| 2678898 | NM_000049.4(ASPA):c.34_46del (p.Gln12fs) | Pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 2854616 | NM_000049.4(ASPA):c.10delinsGG (p.Cys4fs) | Pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 554476 | NM_000049.4(ASPA):c.539G>T (p.Gly180Val) | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 6 |
| 550715 | NM_000049.4(ASPA):c.527-2A>C | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 5 |
| 556181 | NM_000049.4(ASPA):c.89T>C (p.Leu30Pro) | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 5 |
| 950717 | NM_000049.4(ASPA):c.941A>G (p.Ter314Trp) | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 5 |
Per-variant reference — Sugi Variant
Explore ASPA’s pathogenic and likely-pathogenic variants individually — each with its ClinVar classification and conditions, applied ACMG criteria (ClinGen expert panel, where curated), the calibrated in-silico predictors (AlphaMissense, REVEL, SaProt, conservation), gnomAD frequency, and the predictor-disagreement QC signal — on Sugi Variant.
SpliceAI
Top 10 splice-impact sites by Δscore (adjacent positions with the same effect merged into one range; 34 predictions of 388):
| Position(s) | Effect | Δscore | Sites |
|---|---|---|---|
| 17:3489343–3489344 | donor_loss | 1.0000 | 5 |
| 17:3481345 | acceptor_gain | 0.9900 | |
| 17:3481356 | acceptor_gain | 0.9900 | |
| 17:3481591 | acceptor_gain | 0.9900 | |
| 17:3483593–3483594 | donor_loss | 0.9900 | 6 |
| 17:3489233–3489234 | acceptor_loss | 0.9900 | 6 |
| 17:3494460–3494461 | donor_loss | 0.9900 | 6 |
| 17:3481763 | donor_gain | 0.9800 | |
| 17:3483497–3483498 | acceptor_loss | 0.9800 | 6 |
| 17:3483597 | donor_loss | 0.9800 |
AlphaMissense
598 missense substitutions predicted likely pathogenic (of 2,087 scored), across 170 residues. Top 20 hotspot residues, ranked by the number of likely-pathogenic substitutions (of those reachable by a single-nucleotide change), then by mean score:
| Residue | Likely-pathogenic substitutions | Mean am_pathogenicity | Max am_pathogenicity |
|---|---|---|---|
| H116 | 8 | 0.979 | 0.994 |
| D114 | 8 | 0.977 | 0.989 |
| H21 | 8 | 0.975 | 0.989 |
| F282 | 8 | 0.970 | 0.996 |
| D68 | 8 | 0.965 | 0.985 |
| N70 | 8 | 0.953 | 0.989 |
| D251 | 8 | 0.945 | 0.987 |
| F73 | 8 | 0.922 | 0.991 |
| F295 | 8 | 0.806 | 0.934 |
| E285 | 7 | 0.986 | 0.996 |
| E24 | 7 | 0.982 | 0.996 |
| E178 | 7 | 0.974 | 0.992 |
| W252 | 7 | 0.960 | 0.993 |
| E89 | 7 | 0.949 | 0.977 |
| F262 | 7 | 0.943 | 0.979 |
| N284 | 7 | 0.936 | 0.987 |
| N54 | 7 | 0.931 | 0.992 |
| F205 | 7 | 0.871 | 0.971 |
| M122 | 7 | 0.825 | 0.901 |
| M195 | 7 | 0.785 | 0.871 |
HPA cancer prognostics
RNA cancer specificity: Cancer enhanced (Kidney Renal Clear Cell Carcinoma)
Human Protein Atlas survival analysis — favorable = higher expression predicts better survival.
3 prognostic cancer types:
| Cancer | Prognostic | p-value |
|---|---|---|
| Kidney Renal Papillary Cell Carcinoma (TCGA) | favorable | 3.01e-06 |
| Breast Invasive Carcinoma (validation) | favorable | 0.000474 |
| Kidney Renal Clear Cell Carcinoma (validation) | favorable | 0.000507 |
Disease associations
OMIM: gene MIM:608034 | disease phenotypes: MIM:271900, MIM:219750, MIM:219900, MIM:125853, MIM:209850
GenCC curated gene-disease
3 curated gene-disease records:
| Disease | Classification | Inheritance | Records |
|---|---|---|---|
| Canavan disease | Definitive | Autosomal recessive | 5 |
| severe Canavan disease | Supportive | Autosomal recessive | |
| mild Canavan disease | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
1 validity classifications:
| Disease | Classification | Inheritance |
|---|---|---|
| Canavan disease | Definitive | AR |
Genomics England panels (PanelApp)
Clinical diagnostic gene panels including this gene (12 panels, 12 green/diagnostic-grade). Confidence: green = diagnostic, amber = moderate.
12 panels:
| Panel | Rating |
|---|---|
| DDG2P | green |
| Early onset or syndromic epilepsy | green |
| Fetal anomalies | green |
| Hypotonic infant | green |
| Inherited white matter disorders | green |
| Intellectual disability | green |
| Leukodystrophy, childhood onset | green |
| Likely inborn error of metabolism | green |
| Paediatric disorders | green |
| Undiagnosed metabolic disorders | green |
| Unexplained death in infancy and sudden unexplained death in childhood | green |
| White matter disorders and cerebral calcification - childhood onset | green |
Mondo (7): Canavan disease (MONDO:0010079), ocular cystinosis (MONDO:0009064), juvenile nephropathic cystinosis (MONDO:0009066), mild Canavan disease (MONDO:0017831), type 2 diabetes mellitus (MONDO:0005148), autism (MONDO:0005260), severe Canavan disease (MONDO:0017830)
Orphanet (5): Canavan disease (Orphanet:141), Cystinosis (Orphanet:213), Juvenile nephropathic cystinosis (Orphanet:411634), Ocular cystinosis (Orphanet:411641), Mild Canavan disease (Orphanet:314918)
HPO phenotypes
showing 60 of 61 phenotypes (HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000252 | Microcephaly |
| HP:0000256 | Macrocephaly |
| HP:0000365 | Hearing impairment |
| HP:0000505 | Visual impairment |
| HP:0000510 | Rod-cone dystrophy |
| HP:0000618 | Blindness |
| HP:0000639 | Nystagmus |
| HP:0000648 | Optic atrophy |
| HP:0000737 | Irritability |
| HP:0000750 | Delayed speech and language development |
| HP:0001250 | Seizure |
| HP:0001252 | Hypotonia |
| HP:0001254 | Lethargy |
| HP:0001257 | Spasticity |
| HP:0001263 | Global developmental delay |
| HP:0001270 | Motor delay |
| HP:0001328 | Specific learning disability |
| HP:0001344 | Absent speech |
| HP:0001347 | Hyperreflexia |
| HP:0001355 | Megalencephaly |
| HP:0001387 | Joint stiffness |
| HP:0001476 | Delayed closure of the anterior fontanelle |
| HP:0001612 | Weak cry |
| HP:0002013 | Vomiting |
| HP:0002020 | Gastroesophageal reflux |
| HP:0002033 | Poor suck |
| HP:0002069 | Bilateral tonic-clonic seizure |
| HP:0002179 | Opisthotonus |
| HP:0002200 | Pseudobulbar signs |
| HP:0002360 | Sleep disturbance |
| HP:0002376 | Developmental regression |
| HP:0002421 | Poor head control |
| HP:0002465 | Poor speech |
| HP:0002493 | Upper motor neuron dysfunction |
| HP:0002521 | Hypsarrhythmia |
| HP:0002540 | Inability to walk |
| HP:0003487 | Babinski sign |
| HP:0003593 | Infantile onset |
| HP:0004302 | Functional motor deficit |
| HP:0007256 | Abnormal pyramidal sign |
| HP:0007305 | CNS demyelination |
| HP:0010841 | Multifocal epileptiform discharges |
| HP:0011097 | Epileptic spasm |
| HP:0011342 | Mild global developmental delay |
| HP:0011471 | Gastrostomy tube feeding in infancy |
| HP:0011968 | Feeding difficulties |
| HP:0012379 | Abnormal circulating enzyme concentration or activity |
| HP:0012444 | Brain atrophy |
| HP:0012751 | Abnormal basal ganglia MRI signal intensity |
| HP:0012762 | Cerebral white matter atrophy |
| HP:0025013 | Decerebrate rigidity |
| HP:0025053 | Elevated brain N-acetyl aspartate level by MRS |
| HP:0025405 | Visual fixation instability |
| HP:0032273 | Increased circulating N-acetylaspartic acid concentration |
| HP:0032274 | Increased CSF N-acetylaspartic acid concentration |
| HP:0034649 | Elevated urine N-acetylaspartic acid level |
| HP:0040196 | Mild microcephaly |
| HP:0040288 | Nasogastric tube feeding |
| HP:0200136 | Oral-pharyngeal dysphagia |
GWAS associations
1 associations:
| Study | Trait | p-value |
|---|---|---|
| GCST001712_57 | Myopia (pathological) | 4e-16 |
EFO canonical traits (from GWAS)
1 canonical traits:
| EFO ID | Trait name |
|---|---|
| EFO:0004207 | pathological myopia |
MeSH disease descriptors
5 disease descriptors:
| Descriptor | Name | Tree numbers |
|---|---|---|
| D001321 | Autistic Disorder | F03.625.164.113.500 |
| D017825 | Canavan Disease | C10.228.140.163.100.362.375; C10.228.140.695.625.375; C10.314.400.375; C10.574.500.300; C16.320.400.150; C16.320.565.189.362.375; C18.452.132.100.362.375; C18.452.648.189.362.375 |
| D003924 | Diabetes Mellitus, Type 2 | C18.452.394.750.149; C19.246.300 |
| C562683 | Cystinosis, Late-Onset Juvenile or Adolescent Nephropathic Type *(supp.)* | |
| C535765 | Cystinosis, ocular nonnephropathic *(supp.)* |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (CPIC guideline: no)
CTD chemical–gene interactions
33 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Aflatoxin B1 | affects expression, decreases methylation, increases expression, increases methylation | 4 |
| Benzo(a)pyrene | increases expression, increases methylation, affects methylation | 2 |
| Dexamethasone | increases expression, affects cotreatment | 2 |
| Nickel | decreases expression | 2 |
| Zinc | affects binding | 2 |
| Cyclosporine | decreases expression | 2 |
| bisphenol F | increases expression | 1 |
| alpha phellandrene | increases expression | 1 |
| pirinixic acid | affects binding, increases activity, increases expression | 1 |
| bisphenol A | affects cotreatment, increases expression | 1 |
| mono-(2-ethylhexyl)phthalate | increases expression | 1 |
| sodium arsenite | affects methylation | 1 |
| 1,10-phenanthroline | decreases activity | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| O,O-diethylphosphorylcholine iodide | decreases activity | 1 |
| quinocetone | increases expression | 1 |
| bisphenol S | increases expression | 1 |
| incobotulinumtoxinA | increases expression | 1 |
| Troglitazone | increases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Edetic Acid | decreases activity | 1 |
| Ethyl Methanesulfonate | increases expression | 1 |
| Folic Acid | decreases expression | 1 |
| Formaldehyde | increases expression | 1 |
| Indomethacin | affects cotreatment, increases expression | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Tetrachlorodibenzodioxin | affects expression | 1 |
| Thiram | increases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Valproic Acid | increases expression, increases methylation | 1 |
Cellosaurus cell lines
20 cell lines: 10 induced pluripotent stem cell, 7 finite cell line, 3 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_0P14 | GM00059 | Finite cell line | Female |
| CVCL_0P15 | GM00060 | Finite cell line | Male |
| CVCL_0P45 | GM04268 | Finite cell line | Male |
| CVCL_0P73 | GM17821 | Transformed cell line | Female |
| CVCL_0P74 | GM18929 | Transformed cell line | Male |
| CVCL_7415 | GM04663 | Finite cell line | Female |
| CVCL_A5RK | CD#59 ipsC | Induced pluripotent stem cell | Female |
| CVCL_A5RL | CD#60 ipsC | Induced pluripotent stem cell | Male |
| CVCL_A5RM | CD#68 iPSC | Induced pluripotent stem cell | Male |
| CVCL_A5RN | FF08711992 | Finite cell line | Female |
Clinical trials (associated diseases)
Via MONDO — disease-level, not drug-specific.
showing 60 of 301 trials:
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT00006163 | Phase 4 | COMPLETED | Computer-assisted Diabetes Self-management Interventions |
| NCT00036504 | Phase 4 | COMPLETED | Efficacy and Safety of Twice-Daily Insulin Lispro Low Mixture Compared to a Once-Daily Long Acting Insulin Comparator in Patients Who Have Been Using One or More Oral Antihyperglycemic Agents Without Insulin |
| NCT00044460 | Phase 4 | COMPLETED | Efficacy and Safety In Poorly Controlled Type 2 Diabetics |
| NCT00095446 | Phase 4 | COMPLETED | NovoLog Observation Trial in Subjects With Type 1 and Type 2 Diabetes |
| NCT00101751 | Phase 4 | COMPLETED | INITIATE Plus (INITiation of Insulin to Reach A1c TargEt) Study |
| NCT00110370 | Phase 4 | COMPLETED | Comparing Pre-Mixed Insulin With Insulin Glargine Combined With Rapid-Acting Insulin in Patients With Type 2 Diabetes |
| NCT00110448 | Phase 4 | COMPLETED | Japanese Primary Prevention of Atherosclerosis With Aspirin for Diabetes (JPAD) Trial |
| NCT00118950 | Phase 4 | COMPLETED | Effect of Metformin Versus Repaglinide Treatment in Non-Obese Type 2 Diabetic Patients Uncontrolled by Diet |
| NCT00118963 | Phase 4 | COMPLETED | Effect of Repaglinide Versus Metformin Treatment in Non-Obese Patients With Type-2-Diabetes |
| NCT00121966 | Phase 4 | COMPLETED | South Danish Diabetes Study: Evaluation of the Antidiabetic Treatment of Type 2 Diabetes Mellitus |
| NCT00123604 | Phase 4 | COMPLETED | Vascular Effects of Carvedilol Versus Metoprolol in Hypertensive Patients With Type 2 Diabetes |
| NCT00123643 | Phase 4 | COMPLETED | Vascular Effects of Rosiglitazone Versus Glyburide in Type 2 Diabetic Patients |
| NCT00124397 | Phase 4 | COMPLETED | Atorvastatin and Endothelial Function in Type 2 Diabetes Mellitus (ATTEND-Study) |
| NCT00129233 | Phase 4 | COMPLETED | Comparison of Valsartan With Amlodipine in Hypertensive Patients With Glucose Intolerance |
| NCT00133718 | Phase 4 | COMPLETED | A 2 Year Trial of Patients With Type 2 Diabetes Focusing on Cardiovascular Diagnostics and Metabolic Control |
| NCT00135070 | Phase 4 | TERMINATED | Hospital In-Patient Insulin Study |
| NCT00141232 | Phase 4 | COMPLETED | Evaluating Atorvastatin With Omega-3 Fatty Acids in Cardiovascular Risk Reduction in Patients With Type 2 Diabetes |
| NCT00144144 | Phase 4 | UNKNOWN | A Study on Ca Blocker Versus AII Antagonists in Hypertension With Type 2 Diabetes |
| NCT00149331 | Phase 4 | COMPLETED | The Effects of Two Education Strategies About Insulin on Patient Preferences and Perceptions About Insulin Therapy |
| NCT00162357 | Phase 4 | COMPLETED | Post-PCI:Cardiac Imaging in Patients With Diabetes to Detect Coronary Artery Blockages Previously Opened by Angioplasty |
| NCT00174681 | Phase 4 | COMPLETED | Tulip Study: Testing the Usefulness of Lantus When Initiated Prematurely In Patients With Type 2 Diabetes |
| NCT00174824 | Phase 4 | COMPLETED | Comparison of Insulin Glargine and NPH Human Insulin in Progression of Diabetic Retinopathy in Type 2 Diabetic Patients |
| NCT00177398 | Phase 4 | COMPLETED | Effect of Glargine Insulin on Glucose Control in Hospitalized Patients Who Receive Tube Feedings |
| NCT00179400 | Phase 4 | COMPLETED | The Role of Acute Combined PPAR Alpha and Gamma Stimulation on Insulin Action in Humans |
| NCT00184561 | Phase 4 | COMPLETED | Effectiveness and Safety of Biphasic Insulin Aspart 70/30 in Subjects With Type 2 Diabetes |
| NCT00184626 | Phase 4 | COMPLETED | Comparison of Insulin Glargine Versus Biphasic Insulin Aspart 30/70 or Biphasic Insulin Aspart 30/70 in Combination With Metformin in Subjects With Type 2 Diabetes. |
| NCT00191178 | Phase 4 | COMPLETED | Effects of Insulin in Perceived Mood Symptoms in Patients With Type 2 Diabetes |
| NCT00191282 | Phase 4 | COMPLETED | Hyperglycemia and Cardiovascular Outcomes With Type 2 Diabetes |
| NCT00191464 | Phase 4 | COMPLETED | Long-Term Effects of Insulin Plus Metformin Regimens on the Overall and Postprandial Glycemic Control of Patients With Type 2 Diabetes |
| NCT00192803 | Phase 4 | UNKNOWN | Non-Insulin Dependent Diabetes Mellitus (NIDDM) and Angiotensin Converting Enzyme 2 (ACE2): Diabetic Patients Treated With Antihypertensive Drugs |
| NCT00202033 | Phase 4 | COMPLETED | Impact of Self-Monitoring Blood Glucose Frequency on Glycemic Control in Patients With Type 2 Diabetes |
| NCT00205660 | Phase 4 | COMPLETED | Changes in Adiposity, Metabolic Measures From Atypicals to Aripiprazole |
| NCT00212290 | Phase 4 | COMPLETED | Insulin Resistance and Central Nervous System (CNS) Function in Type 2 Diabetes |
| NCT00212303 | Phase 4 | COMPLETED | Exercise Training in Type 2 Diabetes and Hypertension |
| NCT00225342 | Phase 4 | WITHDRAWN | Study Protocol for Rosiglitazone Versus Gliclazide in Diabetics With Angina |
| NCT00238472 | Phase 4 | COMPLETED | A Pilot Study to Evaluate the Effects of Nateglinide vs. Glibenclamide on Renal Hemodynamics and Albumin Excretion |
| NCT00239538 | Phase 4 | COMPLETED | SMOOTH - Blood Pressure Control in Diabetic/Obese Patients |
| NCT00240253 | Phase 4 | COMPLETED | A Study Evaluating the Efficacy and Safety of Adding Symlin® to Lantus® (Insulin Glargine) in Subjects With Type 2 Diabetes |
| NCT00240422 | Phase 4 | COMPLETED | Trial to Compare the Effects of Either Telmisartan (40-80 mg PO Once Daily) or Ramipril (5-10 mg PO Once Daily) on Renal Endothelial Dysfunction in Hypertensive Patients With Type 2 Diabetes |
| NCT00241085 | Phase 4 | COMPLETED | Effect of Valsartan on Proteinuria in Patients With Hypertension and Diabetes Mellitus |
| NCT00241605 | Phase 4 | COMPLETED | AVANDAMET Versus Metformin For Type 2 Diabetes Mellitus |
| NCT00254085 | Phase 4 | UNKNOWN | Substitution of First Phase Insulin Response in Patient With Type 2 Diabetes. |
| NCT00258804 | Phase 4 | COMPLETED | Insulin Glargine During and After the Period of Fasting in Ramadan |
| NCT00262548 | Phase 4 | COMPLETED | C-Reactive Protein (CRP) in Obese Diabetic Women |
| NCT00264589 | Phase 4 | COMPLETED | Exercise Training and Cardiovascular Function in Obesity and in Type 2 Diabetes |
| NCT00264901 | Phase 4 | COMPLETED | Comparison of Self Adjustment Versus Standard of Care Treatment in Subjects With Type 2 Diabetes |
| NCT00265746 | Phase 4 | WITHDRAWN | Prevention of Diabetes Mellitus Development in Women Who Had Already Experienced A Gestational Diabetes |
| NCT00268645 | Phase 4 | COMPLETED | Insulin Glargine in Type 2 Diabetes |
| NCT00272077 | Phase 4 | COMPLETED | Insulin Glargine in Type 2 Diabetes Mellitus |
| NCT00272831 | Phase 4 | COMPLETED | The Use of Cilostazol in Patients With Diabetic Nephropathy |
| NCT00274274 | Phase 4 | COMPLETED | Efficacy and Safety of a Fixed or a Flexible Supplementary Insulin Therapy in Type 2 Diabetes |
| NCT00279201 | Phase 4 | COMPLETED | The DURABLE Trial: Evaluating the Durability of Starter Insulin Regimens in Patients With Type 2 Diabetes (IOOV) |
| NCT00282360 | Phase 4 | COMPLETED | Effect of Metabolic Therapy in Patients With Chronic Ischemic Heart Disease |
| NCT00282451 | Phase 4 | COMPLETED | Effect of Biphasic Insulin Compared to Biphasic Insulin Combined With Insulin Aspart, With or Without Metformin in Type 2 Diabetes |
| NCT00283049 | Phase 4 | TERMINATED | Insulin Glargine Injection Treatment in Place of Thiazolidinedione (TZD), Sulfonylurea, or Metformin in Triple Agent Therapy for Type 2 Diabetes Mellitus (T2DM) Adult Subjects With Unsatisfactory Control |
| NCT00283777 | Phase 4 | COMPLETED | Chromium and Insulin Action |
| NCT00290394 | Phase 4 | COMPLETED | Ambulatory Blood Pressure Reduction After Rosiglitazone Treatment In Normotensive Type 2 Diabetic Patients |
| NCT00296296 | Phase 4 | COMPLETED | Immunosuppression Impact on the Metabolic Control of Kidney Transplant With Pre-Existing Type 2 Diabetes (DM) |
| NCT00300911 | Phase 4 | COMPLETED | Effects of Rosiglitazone on Plasma BNP Levels and Left Ventricular Dysfunction |
| NCT00306176 | Phase 4 | COMPLETED | Rosiglitazone and Exercise in Patients With Type 2 Diabetes Mellitus |
Related Atlas pages
- Associated diseases: Canavan disease, severe Canavan disease, mild Canavan disease
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Canavan disease, familial dilated cardiomyopathy, Fraser syndrome 3, juvenile nephropathic cystinosis, mild Canavan disease, ocular cystinosis, severe Canavan disease