ASRGL1
gene geneOn this page
Also known as FLJ22316ALP1ALP
Summary
ASRGL1 (asparaginase and isoaspartyl peptidase 1, HGNC:16448) is a protein-coding gene on chromosome 11q12.3, encoding Isoaspartyl peptidase/L-asparaginase (Q7L266). Has both L-asparaginase and beta-aspartyl peptidase activity.
Enables asparaginase activity and beta-aspartyl-peptidase activity. Involved in obsolete L-asparagine catabolic process via L-aspartate. Located in cytoplasm.
Source: NCBI Gene 80150 — automated summary from GO annotations (Alliance of Genome Resources).
At a glance
- Gene–disease (curated): inherited retinal dystrophy (Limited, GenCC)
- GWAS associations: 11
- Clinical variants (ClinVar): 309 total — 1 likely-pathogenic (top 10% of genes corpus-wide)
- GTEx eGene: eQTL in 39 tissues, sQTL in 28 (q < 0.05)
- Constraint (gnomAD): pLI 0.00 (LoF-tolerant), LOEUF 1.12 (unconstrained)
- MANE Select transcript:
NM_001083926 - Notable: 309 clinical variants but no curated precision-oncology (CIViC) evidence yet
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:16448 |
| Approved symbol | ASRGL1 |
| Name | asparaginase and isoaspartyl peptidase 1 |
| Location | 11q12.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ22316, ALP1, ALP |
| Ensembl gene | ENSG00000162174 |
| Ensembl biotype | protein_coding |
| OMIM | 609212 |
| Entrez | 80150 |
Gene structure
Transcript identifiers
Ensembl transcripts: 38 — 27 protein_coding, 8 nonsense_mediated_decay, 2 retained_intron, 1 protein_coding_CDS_not_defined
MANE Select: ENST00000415229
Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 1: 4, TSL 2: 4, TSL 3: 1, TSL 4: 2
ENST00000415229, ENST00000301776, ENST00000525496, ENST00000525708, ENST00000526096, ENST00000528206, ENST00000529226, ENST00000533970, ENST00000534183, ENST00000534571, ENST00000628829, ENST00000870124, ENST00000870125, ENST00000870126, ENST00000870127, ENST00000870128, ENST00000935951, ENST00000935952, ENST00000935953, ENST00000935954, ENST00000956001, ENST00000956002, ENST00001005994, ENST00001042785, ENST00001042787, ENST00001042788, ENST00001094500, ENST00001094501, ENST00001112403, ENST00001112404, ENST00001121004, ENST00001127210, ENST00001127211, ENST00001127212, ENST00001127675, ENST00001127676, ENST00001127677, ENST00001137362
RefSeq mRNA: 4 — MANE Select: NM_001083926
NM_001083926, NM_001441216, NM_001441217, NM_025080
CCDS: CCDS8019
Canonical transcript exons
ENST00000415229 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001063097 | 62389133 | 62389251 |
| ENSE00001063099 | 62391522 | 62391632 |
| ENSE00001801006 | 62337890 | 62338167 |
| ENSE00002149030 | 62392079 | 62393412 |
| ENSE00002176270 | 62337448 | 62337574 |
| ENSE00003658475 | 62356987 | 62357144 |
| ENSE00003714901 | 62356325 | 62356467 |
Expression profiles
Bgee: expression breadth ubiquitous, 252 present calls, max score 97.82.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 9.5413 / max 279.2216, expressed in 1203 samples.
Highest expression (Bgee): sperm, male germ cell, uterine tube, putamen, substantia nigra pars reticulata.
Genetic regulation across tissues (GTEx eQTL / sQTL)
ASRGL1 is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 39 tissues and its splicing (sQTL) in 28 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.
showing 20 of 67 significant tissue × QTL associations:
| Tissue | QTL | q-value | Slope | Lead variant |
|---|---|---|---|---|
| Testis | eqtl | 1.3e-48 | -0.52 | 11:62360105:T:C |
| Testis | sqtl | 7.8e-46 | -1.04 | 11:62326097:G:A |
| Muscle Skeletal | eqtl | 5.0e-40 | -0.52 | 11:62337465:T:G |
| Brain Cerebellum | sqtl | 6.3e-22 | -1.59 | 11:62346588:A:T |
| Brain Cerebellar Hemisphere | sqtl | 8.7e-22 | -1.60 | 11:62346588:A:T |
| Whole Blood | eqtl | 6.4e-21 | -0.47 | 11:62352023:G:C |
| Brain Putamen basal ganglia | sqtl | 2.3e-20 | +1.40 | 11:62381836:A:G |
| Brain Frontal Cortex BA9 | sqtl | 5.6e-19 | +1.15 | 11:62381836:A:G |
| Brain Cortex | sqtl | 7.9e-19 | -0.85 | 11:62326097:G:A |
| Brain Frontal Cortex BA9 | eqtl | 7.9e-18 | -0.24 | 11:62318014:A:G |
| Pancreas | eqtl | 1.9e-17 | -0.41 | 11:62321366:C:T |
| Lung | sqtl | 3.0e-17 | -0.56 | 11:62326730:C:T |
| Brain Caudate basal ganglia | sqtl | 1.1e-16 | +1.14 | 11:62346588:A:T |
| Adipose Subcutaneous | sqtl | 3.2e-15 | -0.79 | 11:62397808:A:G |
| Brain Nucleus accumbens basal ganglia | sqtl | 2.5e-14 | +1.17 | 11:62381836:A:G |
| Thyroid | eqtl | 5.9e-14 | -0.45 | 11:62337465:T:G |
| Brain Spinal cord cervical c-1 | eqtl | 7.6e-14 | -0.76 | 11:62316058:C:T |
| Brain Hypothalamus | eqtl | 2.2e-13 | -0.53 | 11:62331263:T:C |
| Cells Cultured fibroblasts | eqtl | 3.8e-12 | +0.43 | 11:62316058:C:T |
| Brain Cerebellum | eqtl | 6.4e-12 | -0.63 | 11:62352023:G:C |
FANTOM5 promoters
1 alternative TSS:
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 114684 | 9.5413 | 1203 |
Top tissues by expression
showing 100 of 283 tissues by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| sperm | CL:0000019 | 97.82 | gold quality |
| male germ cell | CL:0000015 | 97.57 | gold quality |
| right uterine tube | UBERON:0001302 | 97.45 | gold quality |
| putamen | UBERON:0001874 | 97.45 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 97.42 | gold quality |
| left testis | UBERON:0004533 | 97.37 | gold quality |
| adult organism | UBERON:0007023 | 97.24 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 97.14 | gold quality |
| ventral tegmental area | UBERON:0002691 | 97.11 | gold quality |
| right testis | UBERON:0004534 | 97.05 | gold quality |
| amygdala | UBERON:0001876 | 96.86 | gold quality |
| cerebellar vermis | UBERON:0004720 | 96.85 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 96.68 | gold quality |
| substantia nigra | UBERON:0002038 | 96.67 | gold quality |
| caudate nucleus | UBERON:0001873 | 96.63 | gold quality |
| midbrain | UBERON:0001891 | 96.60 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 96.49 | gold quality |
| right frontal lobe | UBERON:0002810 | 96.35 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 95.89 | gold quality |
| cingulate cortex | UBERON:0003027 | 95.69 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 95.69 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 95.62 | gold quality |
| hypothalamus | UBERON:0001898 | 95.61 | gold quality |
| cerebellar cortex | UBERON:0002129 | 95.55 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 95.38 | gold quality |
| testis | UBERON:0000473 | 95.37 | gold quality |
| cerebellum | UBERON:0002037 | 95.33 | gold quality |
| nucleus accumbens | UBERON:0001882 | 95.31 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 95.28 | gold quality |
| metanephros cortex | UBERON:0010533 | 95.28 | gold quality |
| dorsal plus ventral thalamus | UBERON:0001897 | 95.13 | gold quality |
| pons | UBERON:0000988 | 95.12 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 95.00 | gold quality |
| telencephalon | UBERON:0001893 | 94.89 | gold quality |
| temporal lobe | UBERON:0001871 | 94.86 | gold quality |
| endometrium | UBERON:0001295 | 94.69 | gold quality |
| neocortex | UBERON:0001950 | 94.59 | gold quality |
| brain | UBERON:0000955 | 94.57 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 94.52 | gold quality |
| frontal cortex | UBERON:0001870 | 94.49 | gold quality |
| forebrain | UBERON:0001890 | 94.49 | gold quality |
| frontal lobe | UBERON:0016525 | 94.49 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 94.45 | gold quality |
| prefrontal cortex | UBERON:0000451 | 94.36 | gold quality |
| cerebral cortex | UBERON:0000956 | 94.29 | gold quality |
| globus pallidus | UBERON:0001875 | 94.19 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 94.15 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 94.03 | gold quality |
| Ammon’s horn | UBERON:0001954 | 94.00 | gold quality |
| medulla oblongata | UBERON:0001896 | 93.90 | gold quality |
| occipital lobe | UBERON:0002021 | 93.77 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 93.74 | gold quality |
| ganglionic eminence | UBERON:0004023 | 93.65 | gold quality |
| CA1 field of hippocampus | UBERON:0003881 | 93.61 | gold quality |
| medial globus pallidus | UBERON:0002477 | 93.58 | gold quality |
| renal medulla | UBERON:0000362 | 93.41 | gold quality |
| nephron tubule | UBERON:0001231 | 93.30 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 93.12 | gold quality |
| primary visual cortex | UBERON:0002436 | 93.11 | gold quality |
| cortical plate | UBERON:0005343 | 93.04 | gold quality |
| dorsal motor nucleus of vagus nerve | UBERON:0002870 | 92.95 | gold quality |
| pancreatic ductal cell | CL:0002079 | 92.92 | silver quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 92.88 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 92.61 | gold quality |
| spinal cord | UBERON:0002240 | 92.49 | gold quality |
| orbitofrontal cortex | UBERON:0004167 | 92.47 | gold quality |
| inferior olivary complex | UBERON:0002127 | 92.28 | gold quality |
| parietal lobe | UBERON:0001872 | 92.03 | gold quality |
| right lung | UBERON:0002167 | 91.85 | gold quality |
| kidney | UBERON:0002113 | 91.67 | gold quality |
| entorhinal cortex | UBERON:0002728 | 91.46 | gold quality |
| postcentral gyrus | UBERON:0002581 | 91.43 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 91.41 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 91.07 | gold quality |
| corpus callosum | UBERON:0002336 | 90.90 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 90.86 | silver quality |
| ventricular zone | UBERON:0003053 | 90.61 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 90.52 | gold quality |
| upper lobe of lung | UBERON:0008948 | 90.50 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 90.17 | gold quality |
| monocyte | CL:0000576 | 90.01 | gold quality |
| mononuclear cell | CL:0000842 | 89.88 | gold quality |
| kidney epithelium | UBERON:0004819 | 89.87 | gold quality |
| pituitary gland | UBERON:0000007 | 89.70 | gold quality |
| adenohypophysis | UBERON:0002196 | 89.70 | gold quality |
| embryo | UBERON:0000922 | 89.63 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 89.33 | gold quality |
| retina | UBERON:0000966 | 89.30 | gold quality |
| rectum | UBERON:0001052 | 89.27 | gold quality |
| leukocyte | CL:0000738 | 89.23 | gold quality |
| secondary oocyte | CL:0000655 | 89.09 | gold quality |
| cortex of kidney | UBERON:0001225 | 88.51 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 88.35 | gold quality |
| cranial nerve II | UBERON:0000941 | 88.17 | silver quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 88.06 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 87.23 | gold quality |
| pylorus | UBERON:0001166 | 86.64 | gold quality |
| metanephros | UBERON:0000081 | 86.56 | gold quality |
| cardia of stomach | UBERON:0001162 | 86.34 | gold quality |
| caput epididymis | UBERON:0004358 | 86.05 | gold quality |
Single-cell (SCXA)
Detected in 4 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-38 | yes | 755.30 |
| E-MTAB-10287 | yes | 642.53 |
| E-MTAB-3929 | no | 577.03 |
| E-ANND-3 | no | 0.00 |
HPA expression
RNA tissue specificity: Tissue enhanced
showing 60 of 78 HPA tissues / cells by nTPM:
| Tissue / cell | Axis | nTPM | Protein (IHC) |
|---|---|---|---|
| Caudate putamen | tissue | 138.2 | |
| Frontal cortex | tissue | 127.6 | |
| Cervix | tissue | 114.4 | high |
| Postcentral gyrus | tissue | 86.6 | |
| Testis | tissue | 77.9 | medium |
| Periaqueductal gray | tissue | 76.5 | |
| Pons | tissue | 69.8 | |
| Hypothalamus | tissue | 65.9 | |
| Fallopian tube | tissue | 64.1 | medium |
| Medulla oblongata | tissue | 63.2 | |
| Midbrain | tissue | 62.1 | |
| Substantia nigra | tissue | 61.6 | |
| Hippocampus | tissue | 57.3 | medium |
| Locus coeruleus | tissue | 56.1 | |
| Thalamus | tissue | 55.0 | |
| Spinal cord | tissue | 53.7 | |
| Hippocampal formation | tissue | 51.8 | |
| Nucleus accumbens | tissue | 46.9 | |
| Amygdala | tissue | 46.7 | |
| Superior colliculi | tissue | 46.5 | |
| Septum | tissue | 45.1 | |
| Basal ganglia | tissue | 44.8 | medium |
| Putamen | tissue | 44.7 | |
| Cerebellum | tissue | 43.8 | high |
| Ventral forebrain | tissue | 41.7 | |
| Kidney | tissue | 39.5 | medium |
| Cerebral cortex | tissue | 38.4 | low |
| Somatosensory cortex | tissue | 38.4 | |
| Temporal cortex | tissue | 37.4 | |
| Motor cortex | tissue | 36.4 | |
| Entorhinal cortex | tissue | 36.0 | |
| Prefrontal cortex | tissue | 35.9 | |
| Occipital cortex | tissue | 35.5 | |
| Retrosplenial and cingulate cortex | tissue | 32.0 | |
| Retrosplenial cortex | tissue | 32.0 | |
| Corpus callosum | tissue | 31.1 | |
| Insular cortex | tissue | 30.6 | |
| Choroid plexus | tissue | 25.0 | |
| Endometrium 1 | tissue | 24.6 | high |
| Olfactory bulb | tissue | 24.4 | |
| Pituitary gland | tissue | 19.5 | |
| Rectum | tissue | 15.9 | not detected |
| Retina | tissue | 15.4 | |
| Prostate | tissue | 13.8 | low |
| Bone marrow | tissue | 13.4 | not detected |
| Colon | tissue | 13.2 | low |
| Salivary gland | tissue | 11.3 | not detected |
| Lung | tissue | 10.7 | not detected |
| Gallbladder | tissue | 10.5 | low |
| Thymus | tissue | 9.5 | |
| Stomach 1 | tissue | 8.8 | not detected |
| Pancreas | tissue | 7.9 | not detected |
| Seminal vesicle | tissue | 6.7 | low |
| Duodenum | tissue | 6.2 | low |
| Appendix | tissue | 6.1 | low |
| Thyroid gland | tissue | 5.3 | not detected |
| Lymph node | tissue | 5.0 | not detected |
| Adipose tissue | tissue | 4.8 | not detected |
| Tonsil | tissue | 4.4 | not detected |
| Small intestine | tissue | 4.3 | not detected |
Brain sub-regions (HPA Brain Atlas): detected in 190; highest nTPM — Posterior thalamic nucleus (114.4), Medial geniculate body (97.7), Lateral thalamic nuclei (94.4), Medial dorsal thalamic nucleus (92.9), Pulvinar (91.9).
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
Targeting ASRGL1 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).
showing 30 of 46 miRNAs:
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-1-3P | 99.93 | 72.35 | 1914 |
| HSA-MIR-206 | 99.93 | 72.50 | 1893 |
| HSA-MIR-613 | 99.91 | 71.50 | 1710 |
| HSA-MIR-8063 | 99.91 | 69.76 | 3146 |
| HSA-MIR-10527-5P | 99.91 | 72.28 | 3754 |
| HSA-MIR-4698 | 99.84 | 71.41 | 4303 |
| HSA-MIR-3180-5P | 99.82 | 69.12 | 2422 |
| HSA-MIR-4446-5P | 99.72 | 69.19 | 2544 |
| HSA-MIR-4755-5P | 99.71 | 70.34 | 2716 |
| HSA-MIR-5006-3P | 99.71 | 70.26 | 2728 |
| HSA-MIR-3120-3P | 99.54 | 70.28 | 2669 |
| HSA-MIR-543 | 99.52 | 69.03 | 2595 |
| HSA-MIR-199A-5P | 99.51 | 69.71 | 1107 |
| HSA-MIR-199B-5P | 99.51 | 69.74 | 1098 |
| HSA-MIR-4735-5P | 99.43 | 68.49 | 1780 |
| HSA-MIR-520A-5P | 99.35 | 66.72 | 1632 |
| HSA-MIR-525-5P | 99.35 | 66.85 | 1615 |
| HSA-MIR-542-3P | 99.34 | 67.58 | 1270 |
| HSA-MIR-532-3P | 99.34 | 65.76 | 1195 |
| HSA-MIR-4777-5P | 99.33 | 67.53 | 1148 |
| HSA-MIR-6128 | 99.33 | 67.83 | 1581 |
| HSA-MIR-504-3P | 99.30 | 67.18 | 1745 |
| HSA-MIR-196A-3P | 99.19 | 67.34 | 1204 |
| HSA-MIR-4784 | 99.15 | 67.41 | 1733 |
| HSA-MIR-4717-3P | 99.06 | 66.34 | 1072 |
| HSA-MIR-922 | 99.02 | 67.23 | 1838 |
Functional genomics
gnomAD constraint: pLI 6.65e-05, LOEUF 1.12, missense Z 0.127 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD
Regional missense constraint (gnomAD RMC): no regional variation along ENST00000415229 — one region, missense o/e 1.00.
Literature-anchored findings (GeneRIF, showing 15)
- Human ALP cDNA was subsequently cloned. It showed 77% identity to the rat ALP sequence and the gene, ASRGL1 (asparaginase-like 1), mapped to chromosome locus 11q12.3. (PMID:11984834)
- Overexpression of CRASH is associated with metastatic breast cancer. (PMID:19414332)
- ASRGL1 exhibits beta-aspartyl peptidase activity consistent with plant-type asparaginases. ASRGL1 is shown to be an Ntn hydrolase for which Thr168 serves as the essential N-terminal nucleophile for intramolecular processing and catalysis. (PMID:19839645)
- Determined is the structure of the first mammalian plant-type asparaginase in both a precursor and fully activated form. (PMID:22891768)
- Reduced expression of ASRGL1, defined as <75% positively stained tumor cells, was significantly associated with poor prognosis and reduced disease-specific survival in endometrioid endometrial adenocarcinoma (EEA). (PMID:25858696)
- Multiple negatively charged small molecules interact within the active site of ASRGL1 to act as a base in promoting cleavage. (PMID:26780688)
- Our studies suggest that the p.G178R mutation in ASRGL1 leads to photoreceptor degeneration resulting in progressive vision loss. (PMID:27106100)
- In a prospective setting ASRGL1 validates as a strong prognostic biomarker in endometrial carcinoma. Loss of ASRGL1 is associated with aggressive disease and poor survival. (PMID:29096882)
- A panel including p53 and ASRGL1 immunohistochemistry was identified as the most accurate predictor of relapse-free and disease-specific survival. Within this panel, patients were allocated into high- (5.9%), intermediate- (29.5%) and low- (64.6%) risk groups where high-risk patients had a 30-fold risk (P<0.001) of dying of EEC compared to the low-risk group. (PMID:29486992)
- The strongest associations between protein abundance and Alzheimer’s disease severity were found for APLP1, CNTN2 and SPP1 proteins The best discrimination between mild cognitive impairment vs. controls was observed with a model combining APLP1 and SPP1 proteins. (PMID:29684683)
- ASRGL1 was closely associated with growth and apoptosis in cervical cancer. Therefore, ASRGL1 may be a novel, potentially effective anticervical cancer therapy. (PMID:29767260)
- The role of the quaternary structure in the activation of human L-asparaginase. (PMID:32434038)
- ASRGL1 downregulation suppresses hepatocellular carcinoma tumorigenesis in a CDK1-dependent manner. (PMID:36572570)
- l-Asparaginase regulates mTORC1 activity via a TSC2-dependent pathway in pancreatic beta cells. (PMID:36842323)
- TDP-43 proteinopathy in ALS is triggered by loss of ASRGL1 and associated with HML-2 expression. (PMID:38755145)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | asrgl1 | ENSDARG00000021681 |
| mus_musculus | Asrgl1 | ENSMUSG00000024654 |
| rattus_norvegicus | Asrgl1 | ENSRNOG00000020202 |
| drosophila_melanogaster | CG7860 | FBGN0030653 |
Paralogs (2): AGA (ENSG00000038002), TASP1 (ENSG00000089123)
Mouse-model phenotypes
Observed phenotypes of the mouse ortholog (MGI:1913764) from MGI (Alliance of Genome Resources) — knockout/mutant phenotypes, ranked by annotation count. 15 distinct phenotype terms.
| Mouse phenotype (MP) | Records |
|---|---|
| abnormal retina photoreceptor layer morphology | 1 |
| abnormal rod electrophysiology | 1 |
| abnormal cone electrophysiology | 1 |
| abnormal eye electrophysiology | 1 |
| retina cone cell degeneration | 1 |
| decreased retina cone cell number | 1 |
| retina photoreceptor degeneration | 1 |
| retina rod cell degeneration | 1 |
| thin retina inner nuclear layer | 1 |
| thin retina outer nuclear layer | 1 |
| short photoreceptor inner segment | 1 |
| short photoreceptor outer segment | 1 |
| decreased a-wave amplitude | 1 |
| decreased b-wave amplitude | 1 |
| increased retina apoptosis | 1 |
Additional cross-species homologs
Sequence homologs in species beyond Ensembl Compara’s model organisms, by Diamond local protein alignment (% sequence identity; best hit per species). Lower-identity rows are more distant homologs. The matched accessions’ gene symbols aren’t in biobtree yet, so each row shows the UniProt accession.
| Organism | UniProt | Identity | Method |
|---|---|---|---|
| Drosophila sechellia | B4HT15 | 98.2% | Diamond |
| Drosophila simulans | B4QHB1 | 98.2% | Diamond |
| Macaca fascicularis | Q4R7U8 | 96.1% | Diamond |
| Lupinus angustifolius | P30364 | 95.7% | Diamond |
| Lupinus luteus | Q9ZSD6 | 95.7% | Diamond |
| Lupinus albus | P50288 | 94.8% | Diamond |
| Lupinus arboreus | P30362 | 94.4% | Diamond |
| Drosophila erecta | B3N6Y7 | 94.2% | Diamond |
| Drosophila yakuba | B4NWI1 | 93.9% | Diamond |
| Pyrococcus furiosus DSM 3638 | Q8U4E6 | 91.5% | Diamond |
| Pyrococcus abyssi GE5 | Q9V262 | 91.5% | Diamond |
| Thermococcus kodakarensis KOD1 | Q5JHT1 | 91.2% | Diamond |
| Pyrococcus horikoshii OT3 | O57971 | 91.1% | Diamond |
| Escherichia coli K-12 | P37595 | 88.2% | Diamond |
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Q7CQV5 | 88.2% | Diamond |
| Drosophila pseudoobscura pseudoobscura | Q29I93 | 83.6% | Diamond |
| Bos taurus | Q32LE5 | 82.4% | Diamond |
| Arabidopsis thaliana | P50287 | 74.9% | Diamond |
| Drosophila grimshawi | B4JVW6 | 72.7% | Diamond |
| Synechocystis sp. PCC 6803 substr. Kazusa | P74383 | 65.1% | Diamond |
| Nostoc sp. PCC 7120 = FACHB-418 | Q8YQB1 | 64.6% | Diamond |
| Xenopus laevis | Q6GM78 | 61.6% | Diamond |
| Spodoptera frugiperda | O02467 | 61.4% | Diamond |
| Dictyostelium discoideum | Q54WW4 | 53.4% | Diamond |
| Pyrobaculum calidifontis JCM 11548 | A3MUS8 | 43.8% | Diamond |
| Elizabethkingia miricola | Q47898 | 41.1% | Diamond |
Genomic neighbors (locus context)
Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).
| Symbol | Type | Entrez |
|---|---|---|
| SCGB1D4 | protein-coding | 404552 |
| SCGB2A2 | protein-coding | 4250 |
| SCGB1A1 | protein-coding | 7356 |
| AHNAK | protein-coding | 79026 |
| MIR6747 | ncRNA | 102465447 |
| EEF1G | protein-coding | 1937 |
| TUT1 | protein-coding | 64852 |
| SCGB1D2 | protein-coding | 10647 |
Protein
Protein identifiers
Isoaspartyl peptidase/L-asparaginase — Q7L266 (reviewed: Q7L266)
Alternative names: Asparaginase-like protein 1, Beta-aspartyl-peptidase, Isoaspartyl dipeptidase, L-asparagine amidohydrolase
All UniProt accessions (6): A0A024R573, A0A087WUG3, A0A087WZI5, A0A087X1T8, E9PJK6, Q7L266
UniProt curated annotations — full annotation on UniProt →
Function. Has both L-asparaginase and beta-aspartyl peptidase activity. May be involved in the production of L-aspartate, which can act as an excitatory neurotransmitter in some brain regions. Is highly active with L-Asp beta-methyl ester. Besides, has catalytic activity toward beta-aspartyl dipeptides and their methyl esters, including beta-L-Asp-L-Phe, beta-L-Asp-L-Phe methyl ester (aspartame), beta-L-Asp-L-Ala, beta-L-Asp-L-Leu and beta-L-Asp-L-Lys. Does not have aspartylglucosaminidase activity and is inactive toward GlcNAc-L-Asn. Likewise, has no activity toward glutamine.
Subunit / interactions. Heterodimer of an alpha and beta chain produced by autocleavage. This heterodimer may then dimerize in turn, giving rise to a heterotetramer.
Subcellular location. Cytoplasm.
Tissue specificity. Expressed in brain, kidney, testis and tissues of the gastrointestinal tract. Present in sperm (at protein level). Over-expressed in uterine, mammary, prostatic and ovarian carcinoma.
Post-translational modifications. Cleaved into an alpha and beta chain by autocatalysis; this activates the enzyme. The N-terminal residue of the beta subunit is responsible for the nucleophile hydrolase activity.
Activity regulation. Glycine accelerates autocleavage into an alpha and beta chain.
Induction. By 5-alpha-di-hydrotestosterone and progesterone.
Similarity. Belongs to the Ntn-hydrolase family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q7L266-1 | 1 | yes |
| Q7L266-2 | 2 |
RefSeq proteins (4): NP_001077395, NP_001428145, NP_001428146, NP_079356 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000246 | Peptidase_T2 | Family |
| IPR029055 | Ntn_hydrolases_N | Homologous_superfamily |
| IPR033844 | ASRGL1_meta | Family |
Pfam: PF01112
Enzyme classification (BRENDA)
- EC 3.4.19.5 — beta-aspartyl-peptidase (BRENDA: 8 organisms, 47 substrates, 3 inhibitors, 31 Km, 29 kcat entries)
- EC 3.5.1.1 — asparaginase (BRENDA: 169 organisms, 249 substrates, 394 inhibitors, 319 Km, 145 kcat entries)
Substrate kinetics (BRENDA)
27 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| L-ASPARAGINE | 0.0009–1732.5 | 193 |
| L-GLUTAMINE | 0.034–130.35 | 23 |
| L-ASPARTYL-BETA-HYDROXAMATE | 0.011–1.9 | 19 |
| L-GLN | 0.005–70 | 17 |
| BETA-ASP-LEU | 0.09–34 | 15 |
| BETA-ASP-HIS | 2.38–12.6 | 13 |
| L-ASN | 0.0002–7.4 | 12 |
| ASN | 0.0048–4.7 | 7 |
| N-ACETYL-L-ASPARAGINE | 0.597–5.613 | 4 |
| BETA-ASP-PHE | 0.23–0.49 | 3 |
| D-ASPARAGINE | 1.2–24.1 | 3 |
| GLN | 0.0058–6.26 | 3 |
| ALPHA-ASP-LEU | 5–6.9 | 2 |
| BETA-ASP-ALA | 1.2–3.7 | 2 |
| BETA-ASP-GLY | 4.7–18 | 2 |
Catalyzed reactions (Rhea)
- L-asparagine + H2O = L-aspartate + NH4(+) (RHEA:21016)
UniProt features (43 total): strand 15, helix 13, turn 4, chain 2, binding site 2, mutagenesis site 2, sequence conflict 1, active site 1, modified residue 1, splice variant 1, sequence variant 1
Structure
Experimental structures (PDB)
15 structures by resolution:
| PDB | Title | Method | Resolution (Å) |
|---|---|---|---|
| 4O0C | High resolution crystal structure of uncleaved human L-asparaginase protein | X-RAY DIFFRACTION | 1.5 |
| 4O0E | Crystal structure of the human L-asparaginase protein T186V mutant | X-RAY DIFFRACTION | 1.71 |
| 4PVR | Crystal structure of partially-cleaved human l-asparaginase protein in complex with … | X-RAY DIFFRACTION | 1.75 |
| 4PVS | Crystal structure of fully-cleaved human l-asparaginase protein in complex with … | X-RAY DIFFRACTION | 1.84 |
| 4PVP | Crystal structure of malonate-bound human L-asparaginase protein | X-RAY DIFFRACTION | 1.85 |
| 4OSY | STRUCTURE of FULLY-CLEAVED GLYCINE-BOUND HUMAN L-ASPARAGINASE PROTEIN | X-RAY DIFFRACTION | 1.91 |
| 4O0F | Crystal structure of the human L-asparaginase protein T219A mutant | X-RAY DIFFRACTION | 1.92 |
| 4O0D | Crystal structure of the human L-asparaginase protein T168S mutant | X-RAY DIFFRACTION | 1.95 |
| 4OSX | STRUCTURE of UNCLEAVED GLYCINE-BOUND HUMAN L-ASPARAGINASE PROTEIN | X-RAY DIFFRACTION | 1.95 |
| 4O0H | Crystal structure of human L-asparaginase protein with covalently linked substrate … | X-RAY DIFFRACTION | 1.97 |
| 4O0G | Crystal structure of the human L-asparaginase protein T219V mutant | X-RAY DIFFRACTION | 2.1 |
| 4PVQ | Crystal structure of sulfate-bound human l-asparaginase protein | X-RAY DIFFRACTION | 2.13 |
| 3TKJ | Crystal Structure of Human Asparaginase-like Protein 1 Thr168Ala | X-RAY DIFFRACTION | 2.3 |
| 4ZM9 | Crystal structure of circularly permuted human asparaginase-like protein 1 | X-RAY DIFFRACTION | 2.51 |
| 4ET0 | Crystal structure of circularly permuted human asparaginase-like protein 1 | X-RAY DIFFRACTION | 3.3 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q7L266-F1 | 94.20 | 0.89 |
Human Protein Atlas
Protein class: Enzymes, ENZYME proteins, Hydrolases, Metabolic proteins, Predicted intracellular proteins
Protein evidence: Evidence at protein level
Subcellular location (HPA, imaging): microtubules; cytokinetic bridge; nucleoplasm
Antibody reliability (HPA): IH enhanced · IF approved
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1)
| Position | Role |
|---|---|
| 168 | nucleophile |
Ligand- & substrate-binding residues (2)
| Position | Role |
|---|---|
| 196–199 | substrate |
| 219–222 | substrate |
Post-translational modifications (1)
| Type | Positions |
|---|---|
| N-acetylmethionine | 1 |
Mutagenesis-validated functional residues (2)
| Position | Phenotype |
|---|---|
| 168 | abolishes activation by autocleavage. abolishes enzyme activity. |
| 168 | strongly reduced enzyme activity. |
Function
Pathways and Gene Ontology
Reactome pathways
1 curated (TAS) of 4; 0 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).
4 pathways:
| ID | Pathway | Evidence |
|---|---|---|
| R-HSA-8964208 | Phenylalanine metabolism | curated |
| R-HSA-1430728 | Metabolism | — |
| R-HSA-71291 | Metabolism of amino acids and derivatives | — |
| R-HSA-8963691 | Phenylalanine and tyrosine metabolism | — |
MSigDB gene sets: 165 (showing top):
MULLIGHAN_NPM1_SIGNATURE_3_UP, TGCGCANK_UNKNOWN, GOBP_ALPHA_AMINO_ACID_METABOLIC_PROCESS, GAUSSMANN_MLL_AF4_FUSION_TARGETS_A_DN, MONNIER_POSTRADIATION_TUMOR_ESCAPE_UP, GOBP_AMIDE_METABOLIC_PROCESS, GOBP_ORGANIC_ACID_CATABOLIC_PROCESS, LIAO_METASTASIS, GOBP_ORGANIC_ACID_METABOLIC_PROCESS, GOBP_SMALL_MOLECULE_CATABOLIC_PROCESS, LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_DN, GOBP_AMINO_ACID_CATABOLIC_PROCESS, LIU_CMYB_TARGETS_UP, LIU_VMYB_TARGETS_UP, IVANOVA_HEMATOPOIESIS_EARLY_PROGENITOR
GO Biological Process (2): proteolysis (GO:0006508), L-asparagine catabolic process (GO:0006530)
GO Molecular Function (4): asparaginase activity (GO:0004067), beta-aspartyl-peptidase activity (GO:0008798), peptidase activity (GO:0008233), hydrolase activity (GO:0016787)
GO Cellular Component (4): photoreceptor inner segment (GO:0001917), nucleus (GO:0005634), cytoplasm (GO:0005737), cytosol (GO:0005829)
Reactome top-level categories
3 top-level categories:
| Category | Pathways |
|---|---|
| Phenylalanine and tyrosine metabolism | 1 |
| Metabolism | 1 |
| Metabolism of amino acids and derivatives | 1 |
GO top-level categories
13 GO namespaces:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| protein metabolic process | 1 |
| amino acid catabolic process | 1 |
| proteinogenic amino acid catabolic process | 1 |
| amidase activity | 1 |
| omega peptidase activity | 1 |
| threonine-type peptidase activity | 1 |
| hydrolase activity | 1 |
| catalytic activity, acting on a protein | 1 |
| catalytic activity | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
Experimentally-supported GO annotations
GO terms backed by direct experimental evidence (ECO experimental codes) — 4 of 11 annotations. The rest are phylogenetic / computational / electronic (IEA).
4 experimentally-supported GO terms:
| GO term | NS | Evidence |
|---|---|---|
| cytoplasm | CC | direct assay |
| nucleus | CC | high-throughput assay |
| asparaginase activity | MF | direct assay |
| beta-aspartyl-peptidase activity | MF | direct assay |
Protein interactions and networks
STRING
showing 16 of 704 interactions by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ASRGL1 | ASPG | Q86U10 | 937 |
| ASRGL1 | KIAA2013 | Q8IYS2 | 456 |
| ASRGL1 | PPP1R26 | Q5T8A7 | 438 |
| ASRGL1 | FSCN3 | Q9NQT6 | 429 |
| ASRGL1 | ACBD5 | Q5T8D3 | 411 |
| ASRGL1 | RCC2 | Q9P258 | 370 |
| ASRGL1 | GPCPD1 | Q9NPB8 | 370 |
| ASRGL1 | MPRIP | Q6WCQ1 | 370 |
| ASRGL1 | IDH3B | O43837 | 370 |
| ASRGL1 | VPS52 | Q8N1B4 | 370 |
| ASRGL1 | OTUD4 | Q01804 | 366 |
| ASRGL1 | MSANTD1 | Q6ZTZ1 | 361 |
| ASRGL1 | SLC7A5 | Q01650 | 358 |
| ASRGL1 | MYO1D | O94832 | 358 |
| ASRGL1 | VWA8 | A3KMH1 | 327 |
| ASRGL1 | PDXDC1 | Q6P996 | 327 |
IntAct
Human interaction partners of ASRGL1 in IntAct, one row per partner (best MIscore; records = supporting IntAct interaction records).
5 partners by confidence:
| Partner | Interaction type | MIscore | Records |
|---|---|---|---|
| ERBB2 | physical association | 0.370 | 1 |
| GSK3B | physical association | 0.370 | 1 |
| MAP2K5 | physical association | 0.370 | 1 |
| MAPK8IP2 | physical association | 0.370 | 1 |
| TAB1 | physical association | 0.370 | 1 |
BioGRID (32 interactions; top human partners by supporting records): NMI (Affinity Capture-MS; 3 records), MDM4 (Affinity Capture-MS; 2 records), ERBB2 (Two-hybrid), GSK3B (Two-hybrid), MAP2K5 (Two-hybrid), MAPK8IP2 (Two-hybrid), PARP1 (Affinity Capture-MS), PIK3R6 (Affinity Capture-MS), PLD2 (Affinity Capture-MS), PLEKHA4 (Affinity Capture-MS), POLI (Reconstituted Complex), PQLC2L (Affinity Capture-MS), PRNP (Affinity Capture-MS), PROSC (Co-fractionation), S100P (Co-fractionation)
Disease & clinical
Genetic variants
Variant evidence for ASRGL1: 309 ClinVar records (1 pathogenic / likely pathogenic); 11 GWAS associations. Per-variant detail is on Sugi Variant.
ClinVar
309 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 1 |
| Uncertain significance | 178 |
| Likely benign | 113 |
| Benign | 13 |
Top pathogenic / likely-pathogenic (1)
Showing all 1 pathogenic / likely-pathogenic ClinVar records, ranked by ClinVar review status (expert panel → multiple submitters → single submitter), then by number of submitting labs.
| Variant ID | HGVS | Classification | Review | Submitters |
|---|---|---|---|---|
| 563873 | GRCh37/hg19 11q12.1-12.3(chr11:58935215-62177656)x3 | Likely pathogenic | no assertion criteria provided | 1 |
Per-variant reference — Sugi Variant
Explore ASRGL1’s pathogenic and likely-pathogenic variants individually — each with its ClinVar classification and conditions, applied ACMG criteria (ClinGen expert panel, where curated), the calibrated in-silico predictors (AlphaMissense, REVEL, SaProt, conservation), gnomAD frequency, and the predictor-disagreement QC signal — on Sugi Variant.
SpliceAI
Top 10 splice-impact sites by Δscore (adjacent positions with the same effect merged into one range; 37 predictions of 881):
| Position(s) | Effect | Δscore | Sites |
|---|---|---|---|
| 11:62338168–62338169 | donor_loss | 1.0000 | 5 |
| 11:62356979–62356980 | acceptor_gain | 1.0000 | 2 |
| 11:62356985–62356986 | acceptor_loss | 1.0000 | 6 |
| 11:62357145–62357146 | donor_loss | 1.0000 | 5 |
| 11:62389127 | acceptor_gain | 1.0000 | |
| 11:62337575–62337576 | donor_loss | 0.9900 | 5 |
| 11:62353991 | donor_gain | 0.9900 | |
| 11:62356323–62356324 | acceptor_loss | 0.9900 | 5 |
| 11:62356468–62356469 | donor_loss | 0.9900 | 6 |
| 11:62371103 | acceptor_gain | 0.9900 |
AlphaMissense
655 missense substitutions predicted likely pathogenic (of 1,996 scored), across 192 residues. Top 20 hotspot residues, ranked by the number of likely-pathogenic substitutions (of those reachable by a single-nucleotide change), then by mean score:
| Residue | Likely-pathogenic substitutions | Mean am_pathogenicity | Max am_pathogenicity |
|---|---|---|---|
| D199 | 8 | 0.971 | 0.987 |
| D78 | 8 | 0.908 | 0.967 |
| D175 | 8 | 0.896 | 0.969 |
| H8 | 8 | 0.871 | 0.966 |
| M82 | 8 | 0.703 | 0.844 |
| E56 | 7 | 0.954 | 0.984 |
| F61 | 7 | 0.947 | 0.985 |
| W285 | 7 | 0.899 | 0.954 |
| E223 | 7 | 0.885 | 0.968 |
| F125 | 7 | 0.853 | 0.953 |
| N62 | 7 | 0.828 | 0.975 |
| H114 | 7 | 0.786 | 0.884 |
| D210 | 7 | 0.786 | 0.845 |
| G220 | 6 | 0.956 | 0.984 |
| G222 | 6 | 0.956 | 0.978 |
| G66 | 6 | 0.928 | 0.976 |
| G198 | 6 | 0.923 | 0.958 |
| R196 | 6 | 0.915 | 0.984 |
| G188 | 6 | 0.904 | 0.957 |
| T168 | 6 | 0.895 | 0.968 |
HPA cancer prognostics
RNA cancer specificity: Cancer enhanced (Uterine Corpus Endometrial Carcinoma)
Human Protein Atlas survival analysis — favorable = higher expression predicts better survival.
3 prognostic cancer types:
| Cancer | Prognostic | p-value |
|---|---|---|
| Kidney Renal Clear Cell Carcinoma (TCGA) | favorable | 2.11e-08 |
| Kidney Renal Papillary Cell Carcinoma (TCGA) | favorable | 4.71e-06 |
| Liver Hepatocellular Carcinoma (TCGA) | unfavorable | 0.000414 |
Disease associations
OMIM: gene MIM:609212 | disease phenotypes:
GenCC curated gene-disease
1 curated gene-disease records:
| Disease | Classification | Inheritance | Records |
|---|---|---|---|
| inherited retinal dystrophy | Limited | Autosomal recessive |
Genomics England panels (PanelApp)
Clinical diagnostic gene panels including this gene (1 panels, 0 green/diagnostic-grade). Confidence: green = diagnostic, amber = moderate.
1 panels:
| Panel | Rating |
|---|---|
| Retinal disorders | amber |
Mondo (1): inherited retinal dystrophy (MONDO:0019118)
GWAS associations
11 associations:
| Study | Trait | p-value |
|---|---|---|
| GCST012020_83 | Serum metabolite levels | 2e-12 |
| GCST012021_39 | Serum metabolite levels | 2e-12 |
| GCST001737_10 | Chronic obstructive pulmonary disease-related biomarkers | 1e-10 |
| GCST006979_621 | Heel bone mineral density | 1e-9 |
| GCST005956_18 | Waist-to-hip ratio adjusted for BMI | 1e-8 |
| GCST90020027_702 | Waist-hip index | 5e-8 |
| GCST005962_16 | Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test) | 1e-7 |
| GCST008154_32 | Trunk fat mass | 3e-7 |
| GCST005962_2 | Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test) | 5e-7 |
| GCST005956_28 | Waist-to-hip ratio adjusted for BMI | 2e-6 |
| GCST008157_13 | Body fat mass | 4e-6 |
EFO canonical traits (from GWAS)
5 canonical traits:
| EFO ID | Trait name |
|---|---|
| EFO:0005080 | CC16 measurement |
| EFO:0007788 | BMI-adjusted waist-hip ratio |
| EFO:0008007 | age at assessment |
| EFO:0008343 | sex interaction measurement |
| EFO:0009270 | heel bone mineral density |
MeSH disease descriptors
1 disease descriptors:
| Descriptor | Name | Tree numbers |
|---|---|---|
| D058499 | Retinal Dystrophies | C11.768.585.658 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (CPIC guideline: no)
CTD chemical–gene interactions
52 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | increases expression, affects expression | 3 |
| bisphenol A | decreases expression, affects expression, affects cotreatment | 2 |
| sodium arsenite | affects methylation, affects cotreatment, decreases expression, increases abundance | 2 |
| Benzo(a)pyrene | affects methylation, decreases expression, increases methylation | 2 |
| Progesterone | affects cotreatment, increases expression, decreases expression | 2 |
| Tetrachlorodibenzodioxin | decreases expression | 2 |
| Cyclosporine | decreases expression | 2 |
| Genistein | affects cotreatment, decreases expression, increases expression, increases cleavage, increases reaction | 2 |
| aristolochic acid I | increases expression | 1 |
| bisphenol F | affects cotreatment, decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| beta-lapachone | decreases expression | 1 |
| arsenite | affects binding, increases reaction | 1 |
| o,p’-DDT | increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| zinc chromate | decreases expression, increases abundance | 1 |
| manganese chloride | affects cotreatment, decreases expression, increases abundance | 1 |
| potassium chromate(VI) | increases expression | 1 |
| 4-aminophenylarsenoxide | decreases reaction, affects binding | 1 |
| chromium hexavalent ion | decreases expression, increases abundance | 1 |
| K 7174 | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| abrine | decreases expression | 1 |
| bisphenol S | decreases expression, affects cotreatment | 1 |
| jinfukang | increases expression, affects cotreatment | 1 |
| LDN 193189 | affects cotreatment, increases expression | 1 |
| NSC 689534 | affects binding, decreases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Arsenic Trioxide | affects binding, decreases reaction | 1 |
Clinical trials (associated diseases)
Via MONDO — disease-level, not drug-specific.
40 trials:
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT04224207 | Phase 3 | COMPLETED | Management of Retinitis Pigmentosa by Mesenchymal Stem Cells by Wharton’s Jelly Derived Mesenchymal Stem Cells |
| NCT07082855 | Phase 3 | NOT_YET_RECRUITING | A Multicenter, Randomized, Double-Blind, Controlled Clinical Study of Minocycline for the Treatment of Retinitis Pigmentosa |
| NCT03763227 | Phase 2 | COMPLETED | Intravitreal Ranibizumab (Lucentis®) in the Treatment of Non-leaking Macular Cysts in Retinal Dystrophy |
| NCT04068207 | Phase 2 | COMPLETED | Minocycline Treatment in Retinitis Pigmentosa |
| NCT04945772 | Phase 2 | COMPLETED | Efficacy and Safety of MCO-010 Optogenetic Therapy in Adults With Retinitis Pigmentosa [RESTORE] |
| NCT05902962 | Phase 1 | COMPLETED | SAD of IVT VP-001 in PRPF31 Mutation-Associated Retinal Dystrophy Subjects |
| NCT06319872 | Phase 1 | RECRUITING | The Effects of Disulfiram (Antabuse®) on Visual Acuity in Patients With Retinal Degeneration |
| NCT06455826 | Phase 1 | COMPLETED | MAD of IVT VP-001 in PRPF31 Mutation-Associated Retinal Dystrophy Subjects (Wallaby) |
| NCT04855045 | Phase 2/3 | UNKNOWN | An Open-label, Dose Escalation and Double-masked, Randomized, Controlled Trial Evaluating Safety and Tolerability of Sepofarsen in Children (<8 Years of Age) With LCA10 Caused by Mutations in the CEP290 Gene. |
| NCT03872479 | Phase 1/2 | UNKNOWN | Single Ascending Dose Study in Participants With LCA10 |
| NCT04123626 | Phase 1/2 | ACTIVE_NOT_RECRUITING | A Study to Evaluate the Safety and Tolerability of QR-1123 in Subjects With Autosomal Dominant Retinitis Pigmentosa Due to the P23H Mutation in the RHO Gene |
| NCT04545736 | Phase 1/2 | ACTIVE_NOT_RECRUITING | Oral Metformin for Treatment of ABCA4 Retinopathy |
| NCT06212297 | Phase 1/2 | ACTIVE_NOT_RECRUITING | Fellow-eye Study (FE) of LX101 in Subjects With Inherited Retinal Dystrophy |
| NCT06852963 | Phase 1/2 | ACTIVE_NOT_RECRUITING | A Repeat-Dose, Open-Label, Two Arm Safety and Efficacy Study of Two Doses of VP-001 Administered Intravitreally in Participants With Confirmed PRPF31 Mutation-Associated Retinal Dystrophy, Including Participants Previously Treated With VP001 |
| NCT07177196 | Phase 1/2 | ACTIVE_NOT_RECRUITING | Personalized Antisense Oligonucleotide Therapy for a Single Participant With PRPH2 Mutation Associated With Retinal Dystrophy |
| NCT07063030 | Early Phase 1 | RECRUITING | A Study of LX107 Gene Therapy in AIPL1-IRD Patients |
| NCT07656753 | Early Phase 1 | RECRUITING | Safety and Efficacy Study of PUMCH-E111 Injection in Subjects With RLBP1 Related Inherited Retinal Dystrophy |
| NCT01546181 | Not specified | COMPLETED | Retinal Imaging by Adaptive Optics in Healthy Eyes and During Retinal and General Diseases |
| NCT01876147 | Not specified | COMPLETED | Visual and Functional Assessment in Low Vision Patients |
| NCT01920867 | Not specified | UNKNOWN | Stem Cell Ophthalmology Treatment Study |
| NCT02014389 | Not specified | RECRUITING | Evaluation of Objective Perimetry Using Chromatic Multifocal Pupillometer |
| NCT02983305 | Not specified | COMPLETED | Optical Head-Mounted Display Technology for Low Vision Rehabilitation |
| NCT03592017 | Not specified | COMPLETED | Performance of Long-wavelength Autofluorescence Imaging |
| NCT03662386 | Not specified | TERMINATED | Prospective Analysis of Genotype-phenotype Correlations Observed in a Large Cohort of Patients With Hereditary Retinal Dystrophies - GEPHIRD |
| NCT03691168 | Not specified | UNKNOWN | Multi-center Observation of the Natural Course of Inherited Retinal Dystrophies |
| NCT03843840 | Not specified | COMPLETED | Dual Wavelength OCT |
| NCT03853252 | Not specified | COMPLETED | iPS Cells of Patients for Models of Retinal Dystrophies |
| NCT05130385 | Not specified | UNKNOWN | High Resolution Optical Coherence Tomography |
| NCT05294978 | Not specified | RECRUITING | EyeConic: Qualification for Cone-Optogenetics |
| NCT05573984 | Not specified | ACTIVE_NOT_RECRUITING | Natural History of PRPF31 Mutation-Associated Retinal Dystrophy |
| NCT05793515 | Not specified | COMPLETED | Mechanisms of Inherited Retinal Dystrophies Using Whole Genome Sequencing and in Vitro and in Vivo Models |
| NCT05820100 | Not specified | COMPLETED | Observational Study to Assess the Reliability and Validity of the MLYMT and MLSDT |
| NCT05976139 | Not specified | RECRUITING | Micropulsed Laser in Patients With Macular Oedema in Retinal Dystrophies |
| NCT06162585 | Not specified | ACTIVE_NOT_RECRUITING | Non-Interventional Long Term Follow-up Study of Participants Previously Enrolled in the RESTORE Study |
| NCT06177977 | Not specified | RECRUITING | SS-HH-OCT as a Novel Diagnostic Modality for Early-Onset Retinal Dystrophies (EORDs) |
| NCT06375239 | Not specified | RECRUITING | Observational Study to Assess Endpoint Operational Feasibility & Measurement Properties in Patients with Retinal Degeneration |
| NCT06908161 | Not specified | NOT_YET_RECRUITING | Functional Assessments in Vision Impairment |
| NCT07085533 | Not specified | RECRUITING | Natural History Study of Inherited Retinal Diseases |
| NCT07502664 | Not specified | RECRUITING | Development and Evaluation of Functional Visual Field and Navigation Endpoints in Moderate to Profound Inherited Retinal Disease (DEFINE-IRD) |
| NCT07529041 | Not specified | ENROLLING_BY_INVITATION | Real-time Acoustic Biofeedback for Enhancing Fixation Stability: A Proof-of-concept Study to Improve Ophthalmic Imaging Diagnostic Quality |
Related Atlas pages
- Associated diseases: inherited retinal dystrophy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): inherited retinal dystrophy