ASZ1
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Also known as Orf3GASZALP1CT1.19
Summary
ASZ1 (ankyrin repeat, SAM and basic leucine zipper domain containing 1, HGNC:1350) is a protein-coding gene on chromosome 7q31.2, encoding Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1 (Q8WWH4). Plays a central role during spermatogenesis by repressing transposable elements and preventing their mobilization, which is essential for the germline integrity.
Predicted to be involved in male meiotic nuclear division; spermatogenesis; and transposable element silencing. Predicted to be located in cytoplasm. Predicted to be active in pi-body.
Source: NCBI Gene 136991 — RefSeq curated summary.
At a glance
- Gene–disease (curated): male infertility with azoospermia or oligozoospermia due to single gene mutation (Moderate, GenCC)
- GWAS associations: 9
- Clinical variants (ClinVar): 67 total — 2 pathogenic
- MANE Select transcript:
NM_130768
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:1350 |
| Approved symbol | ASZ1 |
| Name | ankyrin repeat, SAM and basic leucine zipper domain containing 1 |
| Location | 7q31.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | Orf3, GASZ, ALP1, CT1.19 |
| Ensembl gene | ENSG00000154438 |
| Ensembl biotype | protein_coding |
| OMIM | 605797 |
| Entrez | 136991 |
Gene structure
Transcript identifiers
Ensembl transcripts: 6 — 3 retained_intron, 2 protein_coding, 1 nonsense_mediated_decay
ENST00000284629, ENST00000428663, ENST00000450714, ENST00000463182, ENST00000465832, ENST00000479454
RefSeq mRNA: 3 — MANE Select: NM_130768
NM_001301821, NM_001301822, NM_130768
CCDS: CCDS5772
Canonical transcript exons
ENST00000284629 — 13 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001129887 | 117363222 | 117363748 |
| ENSE00001646958 | 117427356 | 117427493 |
| ENSE00003459051 | 117379938 | 117380047 |
| ENSE00003461790 | 117382986 | 117383110 |
| ENSE00003478967 | 117426836 | 117426935 |
| ENSE00003534625 | 117381011 | 117381067 |
| ENSE00003546210 | 117384726 | 117384860 |
| ENSE00003549886 | 117368612 | 117368717 |
| ENSE00003557493 | 117367352 | 117367465 |
| ENSE00003564423 | 117420163 | 117420274 |
| ENSE00003574202 | 117385698 | 117385809 |
| ENSE00003594457 | 117382069 | 117382144 |
| ENSE00003627105 | 117422237 | 117422359 |
Expression profiles
Bgee: expression breadth broad, 60 present calls, max score 86.57.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0078 / max 8.1195, expressed in 3 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 85842 | 0.0078 | 3 |
Top tissues by expression
225 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 86.57 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 81.37 | gold quality |
| right testis | UBERON:0004534 | 81.14 | gold quality |
| left testis | UBERON:0004533 | 80.01 | gold quality |
| testis | UBERON:0000473 | 79.77 | gold quality |
| buccal mucosa cell | CL:0002336 | 67.85 | silver quality |
| adult organism | UBERON:0007023 | 55.63 | gold quality |
| corpus callosum | UBERON:0002336 | 55.38 | gold quality |
| sperm | CL:0000019 | 52.25 | gold quality |
| stromal cell of endometrium | CL:0002255 | 52.15 | silver quality |
| lower lobe of lung | UBERON:0008949 | 50.64 | silver quality |
| granulocyte | CL:0000094 | 46.39 | silver quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 43.37 | gold quality |
| upper leg skin | UBERON:0004262 | 42.91 | gold quality |
| secondary oocyte | CL:0000655 | 42.57 | gold quality |
| blood | UBERON:0000178 | 41.77 | silver quality |
| lung | UBERON:0002048 | 41.72 | gold quality |
| vastus lateralis | UBERON:0001379 | 41.41 | gold quality |
| quadriceps femoris | UBERON:0001377 | 41.37 | gold quality |
| superficial temporal artery | UBERON:0001614 | 41.33 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 41.10 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 40.98 | gold quality |
| bone marrow | UBERON:0002371 | 40.88 | gold quality |
| cortical plate | UBERON:0005343 | 40.79 | gold quality |
| monocyte | CL:0000576 | 40.77 | gold quality |
| amniotic fluid | UBERON:0000173 | 40.69 | gold quality |
| jejunal mucosa | UBERON:0000399 | 40.59 | gold quality |
| biceps brachii | UBERON:0001507 | 40.57 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 40.45 | gold quality |
| myocardium | UBERON:0002349 | 40.45 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 3.91 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
28 targeting ASZ1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-432-3P | 100.00 | 67.86 | 705 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-1193 | 100.00 | 65.93 | 529 |
| HSA-MIR-4803 | 99.98 | 71.99 | 3117 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-302C-5P | 99.97 | 72.56 | 3642 |
| HSA-MIR-548AT-5P | 99.96 | 70.83 | 2666 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-7-1-3P | 99.91 | 71.53 | 4384 |
| HSA-MIR-7-2-3P | 99.91 | 71.40 | 4394 |
| HSA-MIR-548E-5P | 99.89 | 72.73 | 4486 |
| HSA-MIR-95-5P | 99.89 | 72.17 | 3973 |
| HSA-MIR-182-5P | 99.87 | 74.03 | 2589 |
| HSA-MIR-6715A-3P | 99.83 | 68.05 | 1473 |
| HSA-MIR-4420 | 99.82 | 70.08 | 1624 |
| HSA-MIR-181B-2-3P | 99.81 | 70.06 | 1646 |
| HSA-MIR-181B-3P | 99.81 | 70.06 | 1646 |
| HSA-MIR-202-5P | 99.78 | 67.65 | 991 |
| HSA-MIR-410-3P | 99.27 | 69.98 | 2457 |
| HSA-MIR-7158-5P | 99.25 | 67.95 | 796 |
| HSA-MIR-3973 | 99.20 | 69.19 | 1990 |
| HSA-MIR-8070 | 99.07 | 69.30 | 1303 |
| HSA-MIR-6715B-3P | 98.80 | 68.07 | 1204 |
| HSA-MIR-513B-3P | 98.76 | 68.12 | 1577 |
| HSA-MIR-3908 | 98.75 | 67.31 | 1160 |
| HSA-MIR-216B-3P | 98.55 | 67.19 | 1223 |
| HSA-MIR-1255B-2-3P | 97.80 | 67.04 | 880 |
Literature-anchored findings (GeneRIF, showing 1)
- Data reveal a potential role of GASZ during embryonic germ cell development and provide a powerful in vitro system for dissecting the molecular pathways in early germ cell formation during embryogenesis. (PMID:23816659)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | asz1 | ENSDARG00000004823 |
| mus_musculus | Asz1 | ENSMUSG00000010796 |
Paralogs (1): ANKRD34C (ENSG00000235711)
Protein
Protein identifiers
Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1 — Q8WWH4 (reviewed: Q8WWH4)
Alternative names: Ankyrin-like protein 1, Germ cell-specific ankyrin, SAM and basic leucine zipper domain-containing protein
All UniProt accessions (3): Q8WWH4, C9JP59, F8WDQ2
UniProt curated annotations — full annotation on UniProt →
Function. Plays a central role during spermatogenesis by repressing transposable elements and preventing their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and governs the methylation and subsequent repression of transposons. Its association with pi-bodies suggests a participation in the primary piRNAs metabolic process. Required prior to the pachytene stage to facilitate the production of multiple types of piRNAs, including those associated with repeats involved in the regulation of retrotransposons. May act by mediating protein-protein interactions during germ cell maturation.
Subunit / interactions. Interacts with DDX4, PIWIL1, RANBP9 and TDRD1.
Subcellular location. Cytoplasm.
Tissue specificity. Expressed exclusively in the testis and ovary and at higher levels in the adult testis compared with the adult ovary.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8WWH4-1 | 1 | yes |
| Q8WWH4-2 | 2 |
RefSeq proteins (3): NP_001288750, NP_001288751, NP_570124* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001660 | SAM | Domain |
| IPR002110 | Ankyrin_rpt | Repeat |
| IPR013761 | SAM/pointed_sf | Homologous_superfamily |
| IPR036770 | Ankyrin_rpt-contain_sf | Homologous_superfamily |
| IPR042650 | Asz1_SAM | Domain |
Pfam: PF00023, PF07647, PF12796
UniProt features (14 total): repeat 6, modified residue 3, chain 1, splice variant 1, sequence variant 1, domain 1, region of interest 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8WWH4-F1 | 66.83 | 0.32 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (3): 18, 20, 17
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-5601884 | PIWI-interacting RNA (piRNA) biogenesis |
| R-HSA-211000 | Gene Silencing by RNA |
| R-HSA-74160 | Gene expression (Transcription) |
MSigDB gene sets: 58 (showing top):
MIDORIKAWA_AMPLIFIED_IN_LIVER_CANCER, GRAESSMANN_APOPTOSIS_BY_SERUM_DEPRIVATION_UP, GOBP_MALE_GAMETE_GENERATION, GOBP_ORGANELLE_FISSION, GOBP_DEVELOPMENTAL_PROCESS_INVOLVED_IN_REPRODUCTION, GOBP_MEIOTIC_CELL_CYCLE_PROCESS, ACEVEDO_METHYLATED_IN_LIVER_CANCER_DN, GOBP_MEIOTIC_CELL_CYCLE, GOCC_RIBONUCLEOPROTEIN_GRANULE, GOCC_POLE_PLASM, GOBP_CELL_CYCLE_PROCESS, chr7q31, MIKKELSEN_IPS_HCP_WITH_H3_UNMETHYLATED, MIKKELSEN_ES_HCP_WITH_H3_UNMETHYLATED, MIKKELSEN_MEF_HCP_WITH_H3_UNMETHYLATED
GO Biological Process (6): male meiotic nuclear division (GO:0007140), spermatogenesis (GO:0007283), transposable element silencing (GO:0010526), cell differentiation (GO:0030154), regulatory ncRNA-mediated gene silencing (GO:0031047), meiotic cell cycle (GO:0051321)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (3): cytoplasm (GO:0005737), pi-body (GO:0071546), cytoplasmic ribonucleoprotein granule (GO:0036464)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Gene Silencing by RNA | 1 |
| Gene expression (Transcription) | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| male gamete generation | 2 |
| meiotic nuclear division | 2 |
| negative regulation of gene expression | 2 |
| meiotic cell cycle | 1 |
| developmental process involved in reproduction | 1 |
| retrotransposition | 1 |
| cellular developmental process | 1 |
| cell cycle | 1 |
| sexual reproduction | 1 |
| reproductive process | 1 |
| binding | 1 |
| intracellular anatomical structure | 1 |
| cellular anatomical structure | 1 |
| P granule | 1 |
| cytoplasm | 1 |
| ribonucleoprotein granule | 1 |
Protein interactions and networks
STRING
1764 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ASZ1 | CWC15 | Q9P013 | 909 |
| ASZ1 | HPX | P02790 | 791 |
| ASZ1 | TSG101 | Q99816 | 775 |
| ASZ1 | PLD6 | Q8N2A8 | 732 |
| ASZ1 | PIWIL2 | Q8TC59 | 717 |
| ASZ1 | SH2D3A | Q9BRG2 | 713 |
| ASZ1 | FAM3B | P58499 | 697 |
| ASZ1 | SH2D3C | Q8N5H7 | 697 |
| ASZ1 | FBL | P22087 | 680 |
| ASZ1 | AMBP | P00977 | 675 |
| ASZ1 | TDRD9 | Q8NDG6 | 666 |
| ASZ1 | MOV10L1 | Q9BXT6 | 656 |
| ASZ1 | TDRKH | Q9Y2W6 | 623 |
| ASZ1 | CTTNBP2 | Q8WZ74 | 616 |
| ASZ1 | PPP1CA | P08129 | 603 |
| ASZ1 | MAEL | Q96JY0 | 603 |
IntAct
35 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| rep | ASZ1 | psi-mi:“MI:0915”(physical association) | 0.600 |
| NRAC | ASZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TSPO2 | ASZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TMEM97 | ASZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SLC35A1 | ASZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| BET1 | ASZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TMEM218 | ASZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ASZ1 | LPAR3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ASZ1 | DEFB127 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TNFRSF10C | ASZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SMIM1 | ASZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| NRAC | ASZ1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| SMIM1 | ASZ1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| DEFB127 | ASZ1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| TSPO2 | ASZ1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| TMEM97 | ASZ1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| SLC35A1 | ASZ1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| BET1 | ASZ1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| TMEM218 | ASZ1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| LPAR3 | ASZ1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| TNFRSF10C | ASZ1 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (14): ASZ1 (Two-hybrid), ASZ1 (Two-hybrid), ASZ1 (Two-hybrid), ASZ1 (Two-hybrid), ASZ1 (Two-hybrid), SLC35A1 (Two-hybrid), LPAR3 (Two-hybrid), TNFRSF10C (Two-hybrid), C14orf180 (Two-hybrid), SMIM1 (Two-hybrid), ASZ1 (Two-hybrid), MBLAC2 (Co-fractionation), ASZ1 (Affinity Capture-Western), TSG101 (Affinity Capture-Western)
ESM2 similar proteins: A0JM56, A0M8T3, A1X154, A4D7T3, A6NJI9, Q008S8, Q00PJ3, Q07DV3, Q07DX6, Q07DY6, Q07DZ7, Q07E17, Q07E30, Q07E43, Q09YH1, Q09YI3, Q09YJ5, Q09YK6, Q09YN0, Q0VD31, Q108U1, Q2IBB1, Q2IBB4, Q2IBE3, Q2IBF5, Q2IBG0, Q2QL84, Q2QLA4, Q2QLB5, Q2QLC6, Q2QLG0, Q2QLH1, Q32NR9, Q5PPX0, Q5ZLG9, Q6DCF6, Q6GQN5, Q6PJI9, Q6ZRR7, Q8BH70
Diamond homologs: A0M8T3, A1X154, A4D7T3, C9JTQ0, Q00PJ3, Q05823, Q05921, Q07DV3, Q07DX6, Q07DY6, Q07DZ7, Q07E17, Q07E30, Q07E43, Q09YH1, Q09YI3, Q09YJ5, Q09YK6, Q09YN0, Q108U1, Q2IBB1, Q2IBB4, Q2IBE3, Q2IBF5, Q2IBG0, Q2QL84, Q2QLA4, Q2QLB5, Q2QLC6, Q2QLG0, Q2QLH1, Q5E9N5, Q8IWZ3, Q8VD46, Q8WMX6, Q8WMX7, Q8WMX8, Q8WWH4, Q9FY48, Q9H078
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
67 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 0 |
| Uncertain significance | 58 |
| Likely benign | 5 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (2)
| Variant ID | HGVS | Classification |
|---|---|---|
| 154392 | GRCh38/hg38 7q31.1-31.31(chr7:114898882-117790123)x1 | Pathogenic |
| 3245669 | NC_000007.13:g.(?116165117)(117307162_?)del | Pathogenic |
SpliceAI
2032 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:117379932:TTTTA:T | donor_loss | 1.0000 |
| 7:117379933:TTTAC:T | donor_loss | 1.0000 |
| 7:117379934:TTAC:T | donor_loss | 1.0000 |
| 7:117379935:TACC:T | donor_loss | 1.0000 |
| 7:117379936:A:AC | donor_gain | 1.0000 |
| 7:117379936:ACCT:A | donor_loss | 1.0000 |
| 7:117379937:C:CC | donor_gain | 1.0000 |
| 7:117380043:CCATT:C | acceptor_gain | 1.0000 |
| 7:117380044:CATT:C | acceptor_gain | 1.0000 |
| 7:117380044:CATTC:C | acceptor_gain | 1.0000 |
| 7:117380045:ATT:A | acceptor_gain | 1.0000 |
| 7:117380045:ATTC:A | acceptor_loss | 1.0000 |
| 7:117380045:ATTCT:A | acceptor_gain | 1.0000 |
| 7:117380046:TT:T | acceptor_gain | 1.0000 |
| 7:117380048:C:CC | acceptor_gain | 1.0000 |
| 7:117380048:CTAA:C | acceptor_loss | 1.0000 |
| 7:117380053:C:CT | acceptor_gain | 1.0000 |
| 7:117380054:A:T | acceptor_gain | 1.0000 |
| 7:117380058:A:AC | acceptor_gain | 1.0000 |
| 7:117380058:A:C | acceptor_gain | 1.0000 |
| 7:117382141:TGAA:T | acceptor_gain | 1.0000 |
| 7:117382145:C:CC | acceptor_gain | 1.0000 |
| 7:117383075:CAA:C | acceptor_gain | 1.0000 |
| 7:117383076:A:T | acceptor_gain | 1.0000 |
| 7:117383083:T:C | acceptor_gain | 1.0000 |
| 7:117383083:T:TC | acceptor_gain | 1.0000 |
| 7:117384723:TACC:T | donor_loss | 1.0000 |
| 7:117384727:T:TA | donor_gain | 1.0000 |
| 7:117384858:AGCC:A | acceptor_loss | 1.0000 |
| 7:117384859:GC:G | acceptor_gain | 1.0000 |
AlphaMissense
3145 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:117385780:G:T | A157D | 0.976 |
| 7:117384811:A:G | L201S | 0.975 |
| 7:117384859:G:T | A185D | 0.974 |
| 7:117385783:G:T | A156D | 0.972 |
| 7:117384848:C:G | A189P | 0.971 |
| 7:117385781:C:G | A157P | 0.970 |
| 7:117384847:G:T | A189E | 0.965 |
| 7:117381042:A:G | L305P | 0.964 |
| 7:117420246:A:C | C119W | 0.963 |
| 7:117420248:A:G | C119R | 0.961 |
| 7:117385715:C:G | D179H | 0.956 |
| 7:117426847:A:G | L65P | 0.956 |
| 7:117384845:C:G | A190P | 0.955 |
| 7:117385784:C:G | A156P | 0.955 |
| 7:117420196:A:G | L136P | 0.955 |
| 7:117420199:A:G | L135P | 0.950 |
| 7:117384748:G:T | A222E | 0.949 |
| 7:117385747:A:T | L168H | 0.949 |
| 7:117385777:C:G | R158P | 0.946 |
| 7:117426884:C:G | A53P | 0.944 |
| 7:117420199:A:C | L135R | 0.943 |
| 7:117420199:A:T | L135Q | 0.943 |
| 7:117384851:A:G | W188R | 0.942 |
| 7:117384851:A:T | W188R | 0.942 |
| 7:117384856:A:G | L186S | 0.942 |
| 7:117385747:A:G | L168P | 0.942 |
| 7:117420250:G:T | A118E | 0.941 |
| 7:117385795:G:C | P152R | 0.938 |
| 7:117384797:C:G | A206P | 0.937 |
| 7:117385747:A:C | L168R | 0.937 |
dbSNP variants (sampled 300 via entrez): RS1000024868 (7:117393524 A>AT), RS1000035626 (7:117417451 C>T), RS1000041895 (7:117393247 G>A,T), RS1000090450 (7:117385412 A>C), RS1000096403 (7:117391724 T>A), RS1000196073 (7:117375046 C>T), RS1000253003 (7:117378139 C>A,T), RS1000258323 (7:117386095 T>C), RS1000312470 (7:117378780 G>A), RS1000341997 (7:117427629 C>A,G,T), RS1000396830 (7:117370849 T>A), RS1000412438 (7:117378493 C>G,T), RS1000413087 (7:117421114 T>A), RS1000430522 (7:117370228 C>A,T), RS1000463953 (7:117427425 A>G)
Disease associations
OMIM: gene MIM:605797 | disease phenotypes: MIM:219700
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| male infertility with azoospermia or oligozoospermia due to single gene mutation | Moderate | Autosomal recessive |
Mondo (2): cystic fibrosis (MONDO:0009061), (MONDO:0018393)
Orphanet (2): Male infertility with azoospermia or oligozoospermia due to single gene mutation (Orphanet:399805), Cystic fibrosis (Orphanet:586)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
9 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002137_4 | Waist circumference | 4.000000e-06 |
| GCST003739_1 | Esophageal adenocarcinoma | 6.000000e-09 |
| GCST005196_149 | Coronary artery disease | 4.000000e-08 |
| GCST005956_17 | Waist-to-hip ratio adjusted for BMI | 5.000000e-09 |
| GCST005962_49 | Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test) | 3.000000e-07 |
| GCST011461_13 | Barrett’s esophagus or Esophageal adenocarcinoma | 6.000000e-08 |
| GCST011462_10 | Barrett’s esophagus or esophageal adenocarcinoma x sex interaction (2df test) | 4.000000e-08 |
| GCST90020025_367 | Waist-to-hip ratio adjusted for BMI | 1.000000e-10 |
| GCST90020027_1324 | Waist-hip index | 8.000000e-11 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007788 | BMI-adjusted waist-hip ratio |
| EFO:0008007 | age at assessment |
| EFO:0008343 | sex interaction measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D003550 | Cystic Fibrosis | C06.689.202; C08.381.187; C16.320.190; C16.614.213 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
9 total (human), top 9 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| pirinixic acid | affects binding, increases activity, increases expression | 1 |
| terbufos | increases methylation | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| CGP 52608 | increases reaction, affects binding | 1 |
| perfluorohexanesulfonic acid | increases expression | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Fonofos | increases methylation | 1 |
| Parathion | increases methylation | 1 |
| Valproic Acid | increases methylation | 1 |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00157690 | PHASE4 | COMPLETED | Study of Alendronate to Prevent and Treat Osteoporosis in Cystic Fibrosis Patients |
| NCT00208078 | PHASE4 | TERMINATED | Effect of Non-Invasive Ventilation in Cystic Fibrosis Patient With Chronic Respiratory Failure. |
| NCT00244270 | PHASE4 | COMPLETED | Cystic Fibrosis and Totally Implantable Vascular Access Devices |
| NCT00333385 | PHASE4 | TERMINATED | Continuous Versus Short Infusions of Ceftazidime in Cystic Fibrosis |
| NCT00411736 | PHASE4 | COMPLETED | Scandinavian Cystic Fibrosis Azithromycin Study |
| NCT00418470 | PHASE4 | TERMINATED | Prolonging the Duration of Peripheral Venous Catheters in Cystic Fibrosis People |
| NCT00431964 | PHASE4 | COMPLETED | Effect of Azithromycin on Lung Function in 6-18 Year-olds With Cystic Fibrosis (CF) Not Infected With P. Aeruginosa |
| NCT00434278 | PHASE4 | TERMINATED | A Trial of Pulmozyme Withdrawal on Exercise Tolerance in Cystic Fibrosis Subjects With Severe Lung Disease (TOPIC) |
| NCT00483769 | PHASE4 | COMPLETED | One Year Glargine Treatment in CFRD Children and Adolescents |
| NCT00528190 | PHASE4 | COMPLETED | Treatment of Aspergillus Fumigatus (a Fungal Infection) in Patients With Cystic Fibrosis |
| NCT00557089 | PHASE4 | COMPLETED | The Effect of rhDNase on Ventilation Inhomogeneity in Patients With Cystic Fibrosis |
| NCT00572975 | PHASE4 | COMPLETED | Malabsorption Blood Test:Toward a Novel Approach to Quantify Steatorrhea |
| NCT00680316 | PHASE4 | TERMINATED | A Study of Pulmozyme® (Dornase Alpha) in 3- to 5-Year-Old Patients With Cystic Fibrosis |
| NCT00685035 | PHASE4 | COMPLETED | Comparison of Airway Clearance Therapy in Cystic Fibrosis Using the Same VEST Therapy Device But With Different Settings |
| NCT00744250 | PHASE4 | TERMINATED | Intraduodenal Aspiration Study to Assess the Bioavailability of Oral Pancrecarb® Compared to Placebo Control |
| NCT00787917 | PHASE4 | TERMINATED | An Exploratory Study to Assess Multiple Doses of Omalizumab in Patients With Cystic Fibrosis Complicated by Acute Bronchopulmonary Aspergillosis (ABPA) |
| NCT00843817 | PHASE4 | COMPLETED | RhDNase and Biodistribution of PMN Serine Proteases in Cystic Fibrosis Sputum |
| NCT00890370 | PHASE4 | COMPLETED | Should Any One Airway Clearance Technique be Recommended for People With Cystic Fibrosis? |
| NCT00996424 | PHASE4 | TERMINATED | The Effect of Inhaled N-Acetylcysteine Compared to Normal Saline on Sputum Rheology and Lung Function |
| NCT01044719 | PHASE4 | UNKNOWN | Duration of Antibiotics in Infective Exacerbations of Cystic Fibrosis |
| NCT01100606 | PHASE4 | COMPLETED | A Study to Evaluate the Mode of Administration and Safety of EUR-1008 (APT-1008) in Infants 1 to 12 Months of Age |
| NCT01131507 | PHASE4 | COMPLETED | PR-018: An Open-Label, Safety Extension of Study PR-011 |
| NCT01207245 | PHASE4 | COMPLETED | Circadian Rhythm In Tobramycin Elimination In Cystic Fibrosis |
| NCT01323101 | PHASE4 | COMPLETED | Doxycycline Effects on Inflammation in Cystic Fibrosis |
| NCT01327703 | PHASE4 | COMPLETED | Control of Steatorrhea in Participants With Cystic Fibrosis and Exocrine Pancreatic Insufficiency |
| NCT01377792 | PHASE4 | COMPLETED | Study of Long-term Treatment With Hypertonic Saline in Patients With Cystic Fibrosis |
| NCT01400750 | PHASE4 | COMPLETED | Comparison of 2 Treatment Regimens for Eradication of P Aeruginosa Infection in Children With Cystic Fibrosis |
| NCT01429259 | PHASE4 | COMPLETED | Population Pharmacokinetics of Prolonged Infusion Meropenem in Cystic Fibrosis (CF) Children |
| NCT01608555 | PHASE4 | COMPLETED | Tobramycin 300 mg Once-a-day (o.d.) Aerosol in Adults With Cystic Fibrosis |
| NCT01667094 | PHASE4 | UNKNOWN | A Study Comparing Continuous Infusion Antibiotics to Standard Treatment for Lung Infections in Cystic Fibrosis |
| NCT01694069 | PHASE4 | TERMINATED | Continuous Infusion Piperacillin-tazobactam for the Treatment of Cystic Fibrosis |
| NCT01702415 | PHASE4 | WITHDRAWN | Zoledronic Acid in Cystic Fibrosis |
| NCT01712334 | PHASE4 | COMPLETED | A Study of the Comparable Efficacy and Safety of Pulmozyme (Dornase Alfa) Delivered by the eRapid Nebulizer System in Patients With Cystic Fibrosis |
| NCT01737983 | PHASE4 | COMPLETED | Effect of Lactobacillus Reuteri in Cystic Fibrosis |
| NCT01844778 | PHASE4 | COMPLETED | Ease of Use and Microbial Contamination of Tobramycin Inhalation Powder (TIP) Versus Nebulised Tobramycin Inhalation Solution (TIS) and Nebulised Colistimethate (COLI) |
| NCT01880346 | PHASE4 | COMPLETED | Comparison of Absorption of Vitamin D in Cystic Fibrosis |
| NCT01882400 | PHASE4 | COMPLETED | Assessment of Response to Treatment of Osteoporosis With Oral Bisphosphonates in Patients With Muscular Dystrophy |
| NCT01937325 | PHASE4 | UNKNOWN | CPET in CF Patients With One G551D Mutation Taking VX770 |
| NCT02015663 | PHASE4 | TERMINATED | Tobramycin Inhalation Powder (TIP) Administered Once Daily Continuously Versus TIP Administered BID in 28 Day on / 28 Day Off Cycles |
| NCT02048592 | PHASE4 | UNKNOWN | Impact of Immunonutrition on the Patients With Cystic Fibrosis |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Barrett esophagus, coronary artery disorder, cystic fibrosis, esophageal adenocarcinoma