ATCAY
gene geneOn this page
Also known as BNIP-H
Summary
ATCAY (ATCAY kinesin light chain interacting caytaxin, HGNC:779) is a protein-coding gene on chromosome 19p13.3, encoding Caytaxin (Q86WG3). Functions in the development of neural tissues, particularly the postnatal maturation of the cerebellar cortex.
This gene encodes a neuron-restricted protein that contains a CRAL-TRIO motif common to proteins that bind small lipophilic molecules. Mutations in this gene are associated with cerebellar ataxia, Cayman type.
Source: NCBI Gene 85300 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Cayman type cerebellar ataxia (Strong, GenCC)
- GWAS associations: 1
- Clinical variants (ClinVar): 222 total — 4 pathogenic
- Phenotypes (HPO): 23
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity unscored
- MANE Select transcript:
NM_033064
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:779 |
| Approved symbol | ATCAY |
| Name | ATCAY kinesin light chain interacting caytaxin |
| Location | 19p13.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | BNIP-H |
| Ensembl gene | ENSG00000167654 |
| Ensembl biotype | protein_coding |
| OMIM | 608179 |
| Entrez | 85300 |
Gene structure
Transcript identifiers
Ensembl transcripts: 7 — 4 protein_coding, 2 protein_coding_CDS_not_defined, 1 nonsense_mediated_decay
ENST00000450849, ENST00000595916, ENST00000597739, ENST00000598136, ENST00000600960, ENST00000601323, ENST00000861418
RefSeq mRNA: 1 — MANE Select: NM_033064
NM_033064
CCDS: CCDS45923
Canonical transcript exons
ENST00000450849 — 13 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001697724 | 3924583 | 3928082 |
| ENSE00002258270 | 3880685 | 3881008 |
| ENSE00003465368 | 3885727 | 3885844 |
| ENSE00003483750 | 3920766 | 3920798 |
| ENSE00003521993 | 3909486 | 3909617 |
| ENSE00003535569 | 3907734 | 3907919 |
| ENSE00003549383 | 3917742 | 3917777 |
| ENSE00003563857 | 3902487 | 3902545 |
| ENSE00003574176 | 3908268 | 3908370 |
| ENSE00003595840 | 3918806 | 3918877 |
| ENSE00003610057 | 3913758 | 3913856 |
| ENSE00003615110 | 3910803 | 3910889 |
| ENSE00003689460 | 3905434 | 3905655 |
Expression profiles
Bgee: expression breadth ubiquitous, 150 present calls, max score 98.21.
FANTOM5 (CAGE): breadth broad, TPM avg 7.1659 / max 284.9070, expressed in 306 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 173242 | 7.1114 | 305 |
| 173244 | 0.0545 | 22 |
Top tissues by expression
239 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| middle temporal gyrus | UBERON:0002771 | 98.21 | gold quality |
| cortical plate | UBERON:0005343 | 97.93 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 97.67 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 97.36 | gold quality |
| endothelial cell | CL:0000115 | 97.22 | gold quality |
| entorhinal cortex | UBERON:0002728 | 97.12 | gold quality |
| ganglionic eminence | UBERON:0004023 | 96.94 | gold quality |
| postcentral gyrus | UBERON:0002581 | 96.85 | gold quality |
| primary visual cortex | UBERON:0002436 | 96.62 | gold quality |
| parietal lobe | UBERON:0001872 | 96.47 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 96.38 | gold quality |
| occipital lobe | UBERON:0002021 | 95.46 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 95.19 | gold quality |
| right frontal lobe | UBERON:0002810 | 95.18 | gold quality |
| frontal cortex | UBERON:0001870 | 95.13 | gold quality |
| neocortex | UBERON:0001950 | 94.87 | gold quality |
| cerebral cortex | UBERON:0000956 | 94.76 | gold quality |
| temporal lobe | UBERON:0001871 | 94.54 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 94.44 | gold quality |
| prefrontal cortex | UBERON:0000451 | 94.27 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 94.25 | gold quality |
| hypothalamus | UBERON:0001898 | 93.71 | gold quality |
| amygdala | UBERON:0001876 | 92.87 | gold quality |
| Ammon’s horn | UBERON:0001954 | 92.77 | gold quality |
| forebrain | UBERON:0001890 | 92.61 | gold quality |
| cerebellar vermis | UBERON:0004720 | 92.17 | gold quality |
| brain | UBERON:0000955 | 92.12 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 91.94 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 91.89 | gold quality |
| nucleus accumbens | UBERON:0001882 | 91.58 | gold quality |
Single-cell (SCXA)
Detected in 5 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-84465 | yes | 27.89 |
| E-GEOD-93593 | yes | 13.74 |
| E-ANND-3 | yes | 3.89 |
| E-GEOD-124858 | no | 12.41 |
| E-MTAB-6678 | no | 3.40 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): GLI3, NR2E1
miRNA regulators (miRDB)
112 targeting ATCAY, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4682 | 100.00 | 68.89 | 1258 |
| HSA-MIR-4455 | 100.00 | 65.48 | 1587 |
| HSA-MIR-574-5P | 100.00 | 66.01 | 989 |
| HSA-MIR-4283 | 100.00 | 66.42 | 2097 |
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-6870-5P | 99.99 | 68.55 | 2115 |
| HSA-MIR-150-5P | 99.99 | 66.69 | 1976 |
| HSA-MIR-3692-3P | 99.98 | 70.27 | 2139 |
| HSA-MIR-4723-5P | 99.97 | 68.70 | 2034 |
| HSA-MIR-5698 | 99.97 | 68.49 | 2029 |
| HSA-MIR-7111-5P | 99.97 | 68.48 | 2062 |
| HSA-MIR-6888-3P | 99.97 | 65.95 | 1170 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-MIR-4267 | 99.96 | 66.53 | 2368 |
| HSA-MIR-185-3P | 99.95 | 67.01 | 1743 |
| HSA-MIR-4778-3P | 99.93 | 70.40 | 1818 |
| HSA-MIR-627-3P | 99.90 | 71.42 | 3316 |
| HSA-MIR-4731-5P | 99.89 | 67.23 | 2537 |
| HSA-MIR-6857-5P | 99.87 | 65.32 | 985 |
| HSA-MIR-6756-5P | 99.82 | 67.97 | 2466 |
| HSA-MIR-609 | 99.82 | 64.26 | 505 |
| HSA-MIR-489-3P | 99.80 | 66.46 | 839 |
| HSA-MIR-1299 | 99.77 | 71.24 | 2389 |
| HSA-MIR-498-5P | 99.76 | 69.64 | 1807 |
| HSA-MIR-6745 | 99.74 | 65.33 | 1321 |
| HSA-MIR-1255A | 99.74 | 68.09 | 744 |
| HSA-MIR-1255B-5P | 99.74 | 68.16 | 741 |
| HSA-MIR-149-3P | 99.72 | 68.22 | 3963 |
| HSA-MIR-6766-5P | 99.68 | 67.70 | 2325 |
| HSA-MIR-646 | 99.68 | 67.84 | 1645 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity Not yet evaluated (unscored). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 4)
- Using shotgun mass spectrometry, we found this protein differentially expressed in the dorsolateral prefrontal cortex from patients with schizophrenia. (PMID:19165527)
- caytaxin binds to kinesin-1 and functions as an adaptor that mediates intracellular transport of specific cargos, one of which is the mitochondrion. (PMID:19861499)
- Caytaxin’s role in maintaining normal neuronal function (PMID:23226316)
- Novel homozygous variants in ATCAY, MCOLN1, and SACS in a complex movement disorder in five consanguineous Pakistani families. (PMID:29449188)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | atcayb | ENSDARG00000059781 |
| danio_rerio | atcaya | ENSDARG00000071678 |
| mus_musculus | Atcay | ENSMUSG00000034958 |
| rattus_norvegicus | Atcay | ENSRNOG00000020407 |
| drosophila_melanogaster | CG11593 | FBGN0035488 |
Paralogs (3): PRUNE2 (ENSG00000106772), BNIP2 (ENSG00000140299), BNIPL (ENSG00000163141)
Protein
Protein identifiers
Caytaxin — Q86WG3 (reviewed: Q86WG3)
Alternative names: Ataxia cayman type protein, BNIP-2-homology
All UniProt accessions (4): Q86WG3, A0A0S2Z5T8, M0R197, M0R225
UniProt curated annotations — full annotation on UniProt →
Function. Functions in the development of neural tissues, particularly the postnatal maturation of the cerebellar cortex. May play a role in neurotransmission through regulation of glutaminase/GLS, an enzyme responsible for the production in neurons of the glutamate neurotransmitter. Alternatively, may regulate the localization of mitochondria within axons and dendrites.
Subunit / interactions. Interacts with KLC1; may link mitochondria to KLC1 and regulate mitochondria localization into neuron projections. Interacts with GLS; the interaction is direct and may control GLS localization, negatively regulating its activity. Interacts with PIN1 (via WW domain); upon NGF stimulation. The interaction with PIN1 and GLS is competitive. May interact with MAP2K2.
Subcellular location. Cell projection. Axon. Dendrite. Presynapse. Mitochondrion. Growth cone. Cytoplasm.
Post-translational modifications. Cleaved by CASP3 and CASP7. The potential C-terminal product released by CASP3 cleavage may inhibit the ERK signaling pathway through MAP2K2. May be ubiquitinated by STUB1.
Disease relevance. Cerebellar ataxia, cayman type (ATCAY) [MIM:601238] Found in a population isolate on Grand Cayman Island and causes a marked psychomotor retardation and prominent nonprogressive cerebellar dysfunction including nystagmus, intention tremor, dysarthria, and wide-based ataxic gait. Hypotonia is present from early childhood. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. The CRAL-TRIO domain is known to bind small hydrophobic molecules.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q86WG3-1 | 1 | yes |
| Q86WG3-3 | 2 |
RefSeq proteins (1): NP_149053* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001251 | CRAL-TRIO_dom | Domain |
| IPR022181 | Bcl2-/adenovirus-E1B | Family |
| IPR036865 | CRAL-TRIO_dom_sf | Homologous_superfamily |
Pfam: PF12496, PF13716
UniProt features (15 total): region of interest 4, mutagenesis site 3, compositionally biased region 2, chain 1, domain 1, sequence variant 1, sequence conflict 1, site 1, splice variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q86WG3-F1 | 70.68 | 0.40 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 105–106 (cleavage; by casp3)
Mutagenesis-validated functional residues (3):
| Position | Phenotype |
|---|---|
| 105 | alters cleavage by casp3. |
| 115–117 | reduced interaction with klc1. |
| 118–120 | completely abolishes interaction with klc1. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 138 (showing top):
GOBP_ALPHA_AMINO_ACID_METABOLIC_PROCESS, GOBP_GLUTAMATE_METABOLIC_PROCESS, GOBP_NEUROGENESIS, GOBP_GLUTAMINE_FAMILY_AMINO_ACID_METABOLIC_PROCESS, FOXD3_01, GOBP_DICARBOXYLIC_ACID_METABOLIC_PROCESS, GOCC_MITOCHONDRIAL_ENVELOPE, GOBP_ORGANIC_ACID_METABOLIC_PROCESS, GOCC_NEURON_PROJECTION, GOBP_CELL_PROJECTION_ORGANIZATION, GOBP_MITOCHONDRION_LOCALIZATION, GOBP_ORGANELLE_LOCALIZATION, GOBP_MITOCHONDRION_DISTRIBUTION, GOBP_REGULATION_OF_AMINO_ACID_METABOLIC_PROCESS, GOCC_NEURON_PROJECTION_TERMINUS
GO Biological Process (6): apoptotic process (GO:0006915), neuron projection development (GO:0031175), regulation of protein localization (GO:0032880), mitochondrion distribution (GO:0048311), obsolete negative regulation of glutamate metabolic process (GO:2000212), nervous system development (GO:0007399)
GO Molecular Function (2): kinesin binding (GO:0019894), protein binding (GO:0005515)
GO Cellular Component (12): cytoplasm (GO:0005737), axon (GO:0030424), dendrite (GO:0030425), growth cone (GO:0030426), mitochondrial membrane (GO:0031966), neuron projection (GO:0043005), neuron projection terminus (GO:0044306), synapse (GO:0045202), perinuclear region of cytoplasm (GO:0048471), presynapse (GO:0098793), membrane (GO:0016020), cell projection (GO:0042995)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 6 |
| neuron projection | 3 |
| programmed cell death | 1 |
| apoptotic signaling pathway | 1 |
| execution phase of apoptosis | 1 |
| neuron development | 1 |
| plasma membrane bounded cell projection organization | 1 |
| intracellular protein localization | 1 |
| regulation of localization | 1 |
| mitochondrion localization | 1 |
| system development | 1 |
| cytoskeletal protein binding | 1 |
| binding | 1 |
| intracellular anatomical structure | 1 |
| dendritic tree | 1 |
| site of polarized growth | 1 |
| distal axon | 1 |
| mitochondrion | 1 |
| mitochondrial envelope | 1 |
| organelle membrane | 1 |
| plasma membrane bounded cell projection | 1 |
| cell junction | 1 |
| cytoplasm | 1 |
| synapse | 1 |
Protein interactions and networks
STRING
504 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ATCAY | TTPA | P49638 | 912 |
| ATCAY | KLC1 | Q07866 | 742 |
| ATCAY | FKBP1C | Q5VVH2 | 708 |
| ATCAY | GDAP1 | Q8TB36 | 624 |
| ATCAY | STUB1 | Q9UNE7 | 512 |
| ATCAY | KLC2 | Q9H0B6 | 447 |
| ATCAY | RAB6B | Q9NRW1 | 444 |
| ATCAY | C1orf94 | Q6P1W5 | 435 |
| ATCAY | KLC4 | Q9NSK0 | 375 |
| ATCAY | TOR1A | O14656 | 369 |
| ATCAY | KLC3 | Q6P597 | 368 |
| ATCAY | CLSTN1 | O94985 | 367 |
| ATCAY | AKAP13 | Q12802 | 353 |
| ATCAY | CWF19L1 | Q69YN2 | 321 |
| ATCAY | ZFR2 | Q9UPR6 | 311 |
| ATCAY | SPANXN2 | Q5MJ10 | 311 |
IntAct
14 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ATCAY | STUB1 | psi-mi:“MI:0915”(physical association) | 0.630 |
| STUB1 | ATCAY | psi-mi:“MI:0915”(physical association) | 0.630 |
| KLC1 | ATCAY | psi-mi:“MI:0915”(physical association) | 0.560 |
| ATCAY | UBE2D2 | psi-mi:“MI:0220”(ubiquitination reaction) | 0.440 |
| CDCA7 | CD33 | psi-mi:“MI:0914”(association) | 0.350 |
| CNTFR | CACNA2D1 | psi-mi:“MI:0914”(association) | 0.350 |
| CXCR3 | RIMOC1 | psi-mi:“MI:0914”(association) | 0.350 |
| POPDC2 | FZD6 | psi-mi:“MI:0914”(association) | 0.350 |
| LPGAT1 | ATCAY | psi-mi:“MI:0914”(association) | 0.350 |
| TARBP2 | H1-1 | psi-mi:“MI:0914”(association) | 0.350 |
| KLC1 | ATCAY | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (13): ATCAY (Reconstituted Complex), STUB1 (Protein-peptide), ATCAY (Affinity Capture-Western), ATCAY (Reconstituted Complex), PIN1 (Reconstituted Complex), ATCAY (Affinity Capture-Western), GLS (Affinity Capture-Western), FATE1 (Two-hybrid), ATCAY (Two-hybrid), ATCAY (Affinity Capture-MS), STUB1 (Two-hybrid), ATCAY (Biochemical Activity), APP (Reconstituted Complex)
ESM2 similar proteins: A0JMA8, A1A535, A1A5P5, A3KMI0, A6H8H2, A8E7C5, E7F187, O15013, O54940, O88870, P41229, P41230, P43125, P70302, P84903, Q03606, Q0IHU9, Q12982, Q13586, Q1LYM3, Q1M168, Q38JA7, Q58CP9, Q5BJR4, Q5F259, Q5R4Q8, Q5R991, Q5RDF1, Q5U245, Q5VZ89, Q6DTM3, Q6H1V1, Q6P3S1, Q6ZPS6, Q6ZUJ8, Q7Z3E5, Q7Z401, Q803Q4, Q86WG3, Q86YR7
Diamond homologs: O54940, P85298, Q07960, Q0IHU9, Q12982, Q1M168, Q52KR3, Q54TH9, Q55AR6, Q5BJR4, Q5FWK3, Q5R4Q8, Q7Z465, Q86WG3, Q8BHE3, Q8WUY3, Q99JU7, Q9CXP4, Q9GKT0, Q9VTU3, A4IF90, A6NI28, A7T167, B2RQE8, B2RTY4, B2RWW0, B9VTT2, D3ZFJ3, D3ZZN9, E7EZG2, E7F3F0, F1LQX4, O14014, O43182, O54834, O94988, P34288, P35688, P42331, P55194
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| STUB1 | “down-regulates quantity by destabilization” | ATCAY | polyubiquitination |
Disease & clinical
Clinical variants and AI predictions
ClinVar
222 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 4 |
| Likely pathogenic | 0 |
| Uncertain significance | 146 |
| Likely benign | 27 |
| Benign | 30 |
Top pathogenic / likely-pathogenic (4)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1319958 | NM_033064.5(ATCAY):c.602_608del (p.Asp201fs) | Pathogenic |
| 1338347 | NM_033064.5(ATCAY):c.903C>G (p.Ser301Arg) | Pathogenic |
| 1338348 | NM_033064.5(ATCAY):c.965+3G>T | Pathogenic |
| 4293711 | NM_033064.5(ATCAY):c.556G>T (p.Glu186Ter) | Pathogenic |
SpliceAI
1887 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:3885722:TTCA:T | acceptor_loss | 1.0000 |
| 19:3885724:CAGGG:C | acceptor_loss | 1.0000 |
| 19:3885725:A:AC | acceptor_loss | 1.0000 |
| 19:3885725:A:AG | acceptor_gain | 1.0000 |
| 19:3885725:AG:A | acceptor_gain | 1.0000 |
| 19:3885725:AGG:A | acceptor_gain | 1.0000 |
| 19:3885726:G:GG | acceptor_gain | 1.0000 |
| 19:3885726:GG:G | acceptor_gain | 1.0000 |
| 19:3885726:GGG:G | acceptor_gain | 1.0000 |
| 19:3885726:GGGGT:G | acceptor_gain | 1.0000 |
| 19:3885842:CAG:C | donor_loss | 1.0000 |
| 19:3885843:AGGTA:A | donor_loss | 1.0000 |
| 19:3885845:G:A | donor_loss | 1.0000 |
| 19:3885846:T:G | donor_loss | 1.0000 |
| 19:3902386:T:TA | acceptor_gain | 1.0000 |
| 19:3902390:T:TA | acceptor_gain | 1.0000 |
| 19:3905423:T:G | acceptor_gain | 1.0000 |
| 19:3905429:TGCA:T | acceptor_loss | 1.0000 |
| 19:3905430:GCAG:G | acceptor_loss | 1.0000 |
| 19:3905431:CA:C | acceptor_loss | 1.0000 |
| 19:3905432:A:AC | acceptor_loss | 1.0000 |
| 19:3905432:A:AG | acceptor_gain | 1.0000 |
| 19:3905433:G:GC | acceptor_gain | 1.0000 |
| 19:3905433:GC:G | acceptor_gain | 1.0000 |
| 19:3905433:GCT:G | acceptor_gain | 1.0000 |
| 19:3905433:GCTC:G | acceptor_gain | 1.0000 |
| 19:3905433:GCTCC:G | acceptor_gain | 1.0000 |
| 19:3905652:G:GT | donor_gain | 1.0000 |
| 19:3905652:GAAG:G | donor_gain | 1.0000 |
| 19:3905653:A:T | donor_gain | 1.0000 |
AlphaMissense
2464 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:3907908:T:A | V178D | 1.000 |
| 19:3907917:G:A | G181E | 1.000 |
| 19:3908268:G:A | G182E | 1.000 |
| 19:3908319:T:C | L199P | 1.000 |
| 19:3908322:C:A | P200Q | 1.000 |
| 19:3908364:T:C | L214P | 1.000 |
| 19:3909526:T:C | Y230H | 1.000 |
| 19:3909583:T:A | W249R | 1.000 |
| 19:3909583:T:C | W249R | 1.000 |
| 19:3909585:G:C | W249C | 1.000 |
| 19:3909585:G:T | W249C | 1.000 |
| 19:3909587:T:C | L250P | 1.000 |
| 19:3909598:T:G | Y254D | 1.000 |
| 19:3910805:T:C | L261S | 1.000 |
| 19:3910810:A:G | K263E | 1.000 |
| 19:3910811:A:C | K263T | 1.000 |
| 19:3910811:A:T | K263I | 1.000 |
| 19:3910812:A:C | K263N | 1.000 |
| 19:3910812:A:T | K263N | 1.000 |
| 19:3910817:T:A | L265Q | 1.000 |
| 19:3910817:T:C | L265P | 1.000 |
| 19:3910832:T:A | I270N | 1.000 |
| 19:3910835:T:A | V271D | 1.000 |
| 19:3913765:T:C | F292L | 1.000 |
| 19:3913766:T:C | F292S | 1.000 |
| 19:3913766:T:G | F292C | 1.000 |
| 19:3913767:C:A | F292L | 1.000 |
| 19:3913767:C:G | F292L | 1.000 |
| 19:3913774:A:G | K295E | 1.000 |
| 19:3913776:G:C | K295N | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000017248 (19:3890324 G>A), RS1000150164 (19:3886161 C>A), RS1000226971 (19:3918167 G>A,T), RS1000248597 (19:3916050 C>G,T), RS1000284091 (19:3905307 T>C), RS1000332041 (19:3911057 G>T), RS1000349615 (19:3915183 A>T), RS1000384166 (19:3886406 C>T), RS1000434753 (19:3887268 G>A), RS1000436834 (19:3915464 C>T), RS1000502926 (19:3911804 A>C,G), RS1000640226 (19:3912055 A>G), RS1000674924 (19:3912198 C>A,G,T), RS1000688352 (19:3905967 T>C), RS1000706266 (19:3911911 C>A,T)
Disease associations
OMIM: gene MIM:608179 | disease phenotypes: MIM:601238
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Cayman type cerebellar ataxia | Strong | Autosomal recessive |
Mondo (1): Cayman type cerebellar ataxia (MONDO:0011025)
Orphanet (1): Cerebellar ataxia, Cayman type (Orphanet:94122)
HPO phenotypes
23 total (23 of 23 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000338 | Hypomimic face |
| HP:0000479 | Abnormal retinal morphology |
| HP:0000486 | Strabismus |
| HP:0000639 | Nystagmus |
| HP:0001251 | Ataxia |
| HP:0001252 | Hypotonia |
| HP:0001260 | Dysarthria |
| HP:0001263 | Global developmental delay |
| HP:0001272 | Cerebellar atrophy |
| HP:0001290 | Generalized hypotonia |
| HP:0001321 | Cerebellar hypoplasia |
| HP:0001332 | Dystonia |
| HP:0001763 | Pes planus |
| HP:0002066 | Gait ataxia |
| HP:0002067 | Bradykinesia |
| HP:0002078 | Truncal ataxia |
| HP:0002080 | Intention tremor |
| HP:0002136 | Broad-based gait |
| HP:0002470 | Nonprogressive cerebellar ataxia |
| HP:0003202 | Skeletal muscle atrophy |
| HP:0003577 | Congenital onset |
| HP:0003593 | Infantile onset |
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001166_1 | Aging (time to event) | 3.000000e-06 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0022597 | aging |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| C563363 | Cerebellar Ataxia, Cayman Type (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
26 total (human), top 26 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression, decreases expression | 2 |
| Benzo(a)pyrene | affects methylation, decreases methylation | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| Valproic Acid | affects expression, increases expression | 2 |
| Cadmium Chloride | increases abundance, increases expression | 2 |
| propionaldehyde | increases expression | 1 |
| bisphenol A | affects cotreatment, decreases methylation | 1 |
| butyraldehyde | increases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| pentanal | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| licochalcone B | increases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Fulvestrant | affects cotreatment, decreases methylation | 1 |
| Vorinostat | decreases expression | 1 |
| Aldehydes | increases expression | 1 |
| Cadmium | increases abundance, increases expression | 1 |
| Carbamazepine | affects expression | 1 |
| Diethylhexyl Phthalate | decreases expression | 1 |
| Lipopolysaccharides | affects response to substance, increases expression, decreases expression | 1 |
| Methapyrilene | increases methylation | 1 |
| Niclosamide | increases expression | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Tretinoin | decreases expression | 1 |
| Aflatoxin B1 | increases methylation | 1 |
Clinical trials (associated diseases)
1 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01793168 | Not specified | RECRUITING | Rare Disease Patient Registry & Natural History Study - Coordination of Rare Diseases at Sanford |
Related Atlas pages
- Associated diseases: Cayman type cerebellar ataxia
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Cayman type cerebellar ataxia