ATG10-IT1

Summary

ATG10-IT1 (ATG10 intronic transcript 1, HGNC:41455) is a long non-coding RNA gene on chromosome 5q14.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41455
Approved symbol	ATG10-IT1
Name	ATG10 intronic transcript 1
Location	5q14.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236447
Ensembl biotype	lncRNA
Entrez	100874311
RNAcentral	URS00004AC573 — lncRNA, 487 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000396880

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000396880 — 1 exons

Exon	Start	End
ENSE00002083441	81991995	81992481

Expression profiles

Bgee: expression breadth ubiquitous, 112 present calls, max score 77.78.

Top tissues by expression

112 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.78	gold quality
skeletal muscle tissue	UBERON:0001134	71.48	silver quality
bone marrow cell	CL:0002092	69.92	silver quality
tonsil	UBERON:0002372	66.86	gold quality
colonic epithelium	UBERON:0000397	64.86	silver quality
bone marrow	UBERON:0002371	64.27	silver quality
hindlimb stylopod muscle	UBERON:0004252	60.90	gold quality
lymph node	UBERON:0000029	60.37	gold quality
duodenum	UBERON:0002114	57.03	gold quality
stromal cell of endometrium	CL:0002255	56.57	gold quality
islet of Langerhans	UBERON:0000006	56.13	gold quality
urinary bladder	UBERON:0001255	55.77	silver quality
liver	UBERON:0002107	55.75	silver quality
placenta	UBERON:0001987	55.37	gold quality
monocyte	CL:0000576	54.83	gold quality
vermiform appendix	UBERON:0001154	54.57	gold quality
blood	UBERON:0000178	54.25	gold quality
adrenal tissue	UBERON:0018303	53.89	gold quality
kidney	UBERON:0002113	53.10	gold quality
uterine cervix	UBERON:0000002	51.87	gold quality
cortex of kidney	UBERON:0001225	51.54	gold quality
muscle of leg	UBERON:0001383	50.85	gold quality
superior frontal gyrus	UBERON:0002661	50.27	gold quality
endocervix	UBERON:0000458	50.06	gold quality
gastrocnemius	UBERON:0001388	49.35	gold quality
calcaneal tendon	UBERON:0003701	49.28	silver quality
prefrontal cortex	UBERON:0000451	49.27	gold quality
primary visual cortex	UBERON:0002436	49.18	silver quality
adult mammalian kidney	UBERON:0000082	49.04	gold quality
endometrium	UBERON:0001295	48.45	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.30

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.