ATP11A-AS1

Summary

ATP11A-AS1 (ATP11A antisense RNA 1, HGNC:40645) is a long non-coding RNA gene on chromosome 13q34.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40645
Approved symbol	ATP11A-AS1
Name	ATP11A antisense RNA 1
Location	13q34
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000232684
Ensembl biotype	lncRNA
Entrez	100874205
RNAcentral	URS000075DF5D — lncRNA, 2230 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000446442

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000446442 — 2 exons

Exon	Start	End
ENSE00001668326	112745449	112747440
ENSE00001707245	112754494	112754693

Expression profiles

Bgee: expression breadth broad, 44 present calls, max score 84.27.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0139 / max 13.5325, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
138312	0.0139	3

Top tissues by expression

158 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	84.27	gold quality
sperm	CL:0000019	80.18	gold quality
bone marrow cell	CL:0002092	69.10	silver quality
sural nerve	UBERON:0015488	65.06	gold quality
colonic epithelium	UBERON:0000397	60.35	silver quality
ventricular zone	UBERON:0003053	56.89	silver quality
right testis	UBERON:0004534	53.51	gold quality
left testis	UBERON:0004533	51.98	gold quality
testis	UBERON:0000473	51.84	gold quality
medial globus pallidus	UBERON:0002477	51.54	gold quality
monocyte	CL:0000576	51.25	silver quality
lower lobe of lung	UBERON:0008949	51.01	silver quality
tonsil	UBERON:0002372	50.76	silver quality
adrenal tissue	UBERON:0018303	49.97	silver quality
gall bladder	UBERON:0002110	49.55	gold quality
blood	UBERON:0000178	49.44	silver quality
globus pallidus	UBERON:0001875	49.03	gold quality
prefrontal cortex	UBERON:0000451	48.97	silver quality
calcaneal tendon	UBERON:0003701	47.63	silver quality
oviduct epithelium	UBERON:0004804	46.65	silver quality
lung	UBERON:0002048	46.10	silver quality
corpus callosum	UBERON:0002336	45.73	gold quality
gastrocnemius	UBERON:0001388	45.49	silver quality
fallopian tube	UBERON:0003889	45.15	silver quality
right frontal lobe	UBERON:0002810	44.02	gold quality
anatomical system	UBERON:0000467	43.69	gold quality
material anatomical entity	UBERON:0000465	43.55	gold quality
multicellular organism	UBERON:0000468	43.47	gold quality
tibial nerve	UBERON:0001323	43.47	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.85

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.