ATP11B-DT

Summary

ATP11B-DT (ATP11B divergent transcript, HGNC:55642) is a long non-coding RNA gene on chromosome 3q26.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55642
Approved symbol	ATP11B-DT
Name	ATP11B divergent transcript
Location	3q26.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000240063
Ensembl biotype	lncRNA
Entrez	105374245
RNAcentral	URS00026A272A — lncRNA, 2829 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 12 — 12 lncRNA

ENST00000488882, ENST00000788928, ENST00000788929, ENST00000788930, ENST00000788931, ENST00000788932, ENST00000788933, ENST00000788934, ENST00000788935, ENST00000788936, ENST00000788937, ENST00000788938

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000488882 — 2 exons

Exon	Start	End
ENSE00001906897	182793148	182793394
ENSE00001957223	182783236	182784865

Expression profiles

Bgee: expression breadth broad, 69 present calls, max score 76.64.

Top tissues by expression

69 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.64	silver quality
ganglionic eminence	UBERON:0004023	56.91	silver quality
myometrium	UBERON:0001296	55.76	silver quality
monocyte	CL:0000576	51.90	silver quality
prefrontal cortex	UBERON:0000451	50.91	silver quality
lower esophagus mucosa	UBERON:0035834	50.70	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	50.38	gold quality
islet of Langerhans	UBERON:0000006	50.03	gold quality
blood	UBERON:0000178	49.58	silver quality
bone marrow	UBERON:0002371	48.46	silver quality
urinary bladder	UBERON:0001255	48.19	silver quality
prostate gland	UBERON:0002367	48.12	gold quality
frontal cortex	UBERON:0001870	47.87	silver quality
liver	UBERON:0002107	47.33	silver quality
granulocyte	CL:0000094	47.15	silver quality
body of pancreas	UBERON:0001150	46.86	silver quality
tibial artery	UBERON:0007610	46.29	silver quality
esophagus mucosa	UBERON:0002469	45.81	gold quality
esophagus	UBERON:0001043	45.76	gold quality
right lobe of liver	UBERON:0001114	45.65	silver quality
popliteal artery	UBERON:0002250	45.45	silver quality
cerebral cortex	UBERON:0000956	45.08	gold quality
thyroid gland	UBERON:0002046	44.41	gold quality
gall bladder	UBERON:0002110	44.25	gold quality
gastrocnemius	UBERON:0001388	43.45	silver quality
cerebellar hemisphere	UBERON:0002245	43.29	silver quality
tonsil	UBERON:0002372	43.10	silver quality
saliva-secreting gland	UBERON:0001044	41.84	silver quality
multicellular organism	UBERON:0000468	41.66	gold quality
skin of abdomen	UBERON:0001416	41.13	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.92

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.