ATP13A3-DT

Summary

ATP13A3-DT (ATP13A3 divergent transcript, HGNC:48570) is a long non-coding RNA gene on chromosome 3q29.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:48570
Approved symbol	ATP13A3-DT
Name	ATP13A3 divergent transcript
Location	3q29
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000233058
Ensembl biotype	lncRNA
Entrez	401106
RNAcentral	URS000075C0BA — lncRNA, 1141 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 14 lncRNA

ENST00000437597, ENST00000448892, ENST00000653684, ENST00000656823, ENST00000657621, ENST00000661941, ENST00000662856, ENST00000665891, ENST00000670064, ENST00000671306, ENST00000685672, ENST00000847430, ENST00000847431, ENST00000847432

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000437597 — 3 exons

Exon	Start	End
ENSE00001719344	194497938	194500180
ENSE00003865140	194487146	194487172
ENSE00003871147	194488599	194488726

Expression profiles

Bgee: expression breadth ubiquitous, 163 present calls, max score 79.56.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 2.5791 / max 68.5220, expressed in 968 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
40651	1.9802	876
40652	0.4585	146
40654	0.0900	24
40653	0.0504	26

Top tissues by expression

234 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.56	gold quality
cortical plate	UBERON:0005343	76.62	gold quality
cerebellar hemisphere	UBERON:0002245	75.29	gold quality
cerebellar cortex	UBERON:0002129	75.23	gold quality
right hemisphere of cerebellum	UBERON:0014890	74.83	gold quality
right lobe of liver	UBERON:0001114	74.47	gold quality
cerebellum	UBERON:0002037	74.40	gold quality
ganglionic eminence	UBERON:0004023	73.82	gold quality
sural nerve	UBERON:0015488	73.68	gold quality
hypothalamus	UBERON:0001898	73.52	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	72.76	gold quality
islet of Langerhans	UBERON:0000006	71.75	gold quality
right frontal lobe	UBERON:0002810	71.00	gold quality
anterior cingulate cortex	UBERON:0009835	70.95	gold quality
prefrontal cortex	UBERON:0000451	70.61	gold quality
adenohypophysis	UBERON:0002196	70.53	gold quality
pituitary gland	UBERON:0000007	69.86	gold quality
right atrium auricular region	UBERON:0006631	69.84	gold quality
left adrenal gland	UBERON:0001234	69.73	gold quality
right adrenal gland cortex	UBERON:0035827	69.57	gold quality
cardiac atrium	UBERON:0002081	69.56	gold quality
right adrenal gland	UBERON:0001233	69.54	gold quality
Brodmann (1909) area 9	UBERON:0013540	69.39	gold quality
neocortex	UBERON:0001950	69.22	gold quality
frontal cortex	UBERON:0001870	69.10	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	69.08	gold quality
left adrenal gland cortex	UBERON:0035825	68.92	gold quality
amygdala	UBERON:0001876	68.85	gold quality
parotid gland	UBERON:0001831	68.67	gold quality
liver	UBERON:0002107	68.67	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.72

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.