ATP13A4-AS1

Summary

ATP13A4-AS1 (ATP13A4 antisense RNA 1, HGNC:41095) is a long non-coding RNA gene on chromosome 3q29.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41095
Approved symbol	ATP13A4-AS1
Name	ATP13A4 antisense RNA 1
Location	3q29
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000225473
Ensembl biotype	lncRNA
Entrez	101929198
RNAcentral	URS000075C044 — lncRNA, 1467 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000426459, ENST00000431512, ENST00000817206, ENST00000817207, ENST00000817208

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000426459 — 3 exons

Exon	Start	End
ENSE00001610010	193553412	193553504
ENSE00001672654	193554272	193554912
ENSE00001680431	193553707	193553767

Expression profiles

Bgee: expression breadth ubiquitous, 118 present calls, max score 83.72.

Top tissues by expression

207 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
upper lobe of left lung	UBERON:0008952	83.72	gold quality
upper lobe of lung	UBERON:0008948	83.42	gold quality
right lung	UBERON:0002167	78.28	gold quality
lung	UBERON:0002048	77.19	gold quality
lower lobe of lung	UBERON:0008949	72.77	silver quality
sural nerve	UBERON:0015488	72.00	gold quality
ventricular zone	UBERON:0003053	71.87	gold quality
nucleus accumbens	UBERON:0001882	67.77	gold quality
amygdala	UBERON:0001876	67.52	gold quality
caudate nucleus	UBERON:0001873	67.42	gold quality
anterior cingulate cortex	UBERON:0009835	66.53	gold quality
corpus callosum	UBERON:0002336	66.21	gold quality
putamen	UBERON:0001874	66.03	gold quality
visceral pleura	UBERON:0002401	65.38	gold quality
prefrontal cortex	UBERON:0000451	64.58	gold quality
right frontal lobe	UBERON:0002810	63.94	gold quality
ganglionic eminence	UBERON:0004023	63.62	gold quality
Brodmann (1909) area 9	UBERON:0013540	62.53	gold quality
left lobe of thyroid gland	UBERON:0001120	62.40	gold quality
right lobe of thyroid gland	UBERON:0001119	61.95	gold quality
thyroid gland	UBERON:0002046	61.59	gold quality
hypothalamus	UBERON:0001898	61.06	gold quality
gall bladder	UBERON:0002110	60.99	gold quality
neocortex	UBERON:0001950	60.67	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	60.32	gold quality
frontal cortex	UBERON:0001870	59.52	gold quality
forebrain	UBERON:0001890	59.39	gold quality
body of stomach	UBERON:0001161	59.14	gold quality
brain	UBERON:0000955	58.21	gold quality
substantia nigra	UBERON:0002038	58.13	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.39

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.