ATP13A5-AS1

Summary

ATP13A5-AS1 (ATP13A5 antisense RNA 1, HGNC:41281) is a long non-coding RNA gene on chromosome 3q29.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41281
Approved symbol	ATP13A5-AS1
Name	ATP13A5 antisense RNA 1
Location	3q29
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236508
Ensembl biotype	lncRNA
Entrez	100874218
RNAcentral	URS000075BBF5 — lncRNA, 635 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000414634

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000414634 — 2 exons

Exon	Start	End
ENSE00001672438	193314044	193314362
ENSE00001737153	193307244	193307400

Expression profiles

Bgee: expression breadth broad, 93 present calls, max score 89.25.

Top tissues by expression

93 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	89.25	gold quality
skeletal muscle tissue	UBERON:0001134	78.35	gold quality
muscle of leg	UBERON:0001383	77.48	gold quality
hindlimb stylopod muscle	UBERON:0004252	76.96	gold quality
gastrocnemius	UBERON:0001388	76.12	gold quality
cortical plate	UBERON:0005343	70.76	gold quality
monocyte	CL:0000576	67.00	gold quality
leukocyte	CL:0000738	66.87	gold quality
prefrontal cortex	UBERON:0000451	65.28	gold quality
ganglionic eminence	UBERON:0004023	64.82	gold quality
frontal cortex	UBERON:0001870	62.20	gold quality
anterior cingulate cortex	UBERON:0009835	61.46	gold quality
cerebral cortex	UBERON:0000956	61.30	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	60.83	gold quality
right atrium auricular region	UBERON:0006631	60.76	gold quality
hypothalamus	UBERON:0001898	60.58	gold quality
substantia nigra	UBERON:0002038	60.23	gold quality
Ammon’s horn	UBERON:0001954	60.02	gold quality
Brodmann (1909) area 9	UBERON:0013540	59.67	gold quality
heart	UBERON:0000948	59.25	gold quality
amygdala	UBERON:0001876	59.02	gold quality
right frontal lobe	UBERON:0002810	58.67	gold quality
brain	UBERON:0000955	58.59	gold quality
putamen	UBERON:0001874	58.44	gold quality
primary visual cortex	UBERON:0002436	58.41	gold quality
heart left ventricle	UBERON:0002084	58.22	gold quality
caudate nucleus	UBERON:0001873	57.62	gold quality
gall bladder	UBERON:0002110	57.37	gold quality
testis	UBERON:0000473	57.21	gold quality
left testis	UBERON:0004533	56.80	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.48

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.