ATP2A1-AS1

Summary

ATP2A1-AS1 (ATP2A1 antisense RNA 1, HGNC:51370) is a long non-coding RNA gene on chromosome 16p11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51370
Approved symbol	ATP2A1-AS1
Name	ATP2A1 antisense RNA 1
Location	16p11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000260442
Ensembl biotype	lncRNA
Entrez	100289092
RNAcentral	URS000075E145 — lncRNA, 591 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 10 lncRNA

ENST00000561547, ENST00000566956, ENST00000686287, ENST00000686664, ENST00000691192, ENST00000821823, ENST00000821824, ENST00000821825, ENST00000821826, ENST00000821827

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000561547 — 2 exons

Exon	Start	End
ENSE00004228987	28879489	28879938
ENSE00004228988	28878957	28879107

Expression profiles

Bgee: expression breadth ubiquitous, 166 present calls, max score 88.81.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 5.7903 / max 64.1790, expressed in 1376 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
156918	5.7903	1376

Top tissues by expression

244 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
hindlimb stylopod muscle	UBERON:0004252	88.81	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	86.14	gold quality
muscle of leg	UBERON:0001383	84.99	gold quality
gastrocnemius	UBERON:0001388	84.89	gold quality
endothelial cell	CL:0000115	84.06	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	82.36	silver quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.49	silver quality
biceps brachii	UBERON:0001507	81.03	silver quality
skeletal muscle tissue	UBERON:0001134	80.69	gold quality
sperm	CL:0000019	79.32	silver quality
right testis	UBERON:0004534	79.00	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	78.78	silver quality
tibialis anterior	UBERON:0001385	78.40	silver quality
left testis	UBERON:0004533	78.22	gold quality
muscle tissue	UBERON:0002385	77.71	gold quality
testis	UBERON:0000473	76.57	gold quality
ganglionic eminence	UBERON:0004023	75.65	gold quality
ventricular zone	UBERON:0003053	70.37	gold quality
parotid gland	UBERON:0001831	70.29	gold quality
tendon of biceps brachii	UBERON:0008188	69.05	silver quality
bone marrow cell	CL:0002092	68.75	silver quality
cortical plate	UBERON:0005343	67.90	gold quality
mucosa of transverse colon	UBERON:0004991	67.70	gold quality
anterior cingulate cortex	UBERON:0009835	66.39	gold quality
prefrontal cortex	UBERON:0000451	66.03	gold quality
granulocyte	CL:0000094	65.94	gold quality
primary visual cortex	UBERON:0002436	65.26	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	65.18	gold quality
smooth muscle tissue	UBERON:0001135	65.10	gold quality
vermiform appendix	UBERON:0001154	64.88	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.51

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.