ATP2B2-IT1

Summary

ATP2B2-IT1 (ATP2B2 intronic transcript 1, HGNC:41309) is a long non-coding RNA gene on chromosome 3p25.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41309
Approved symbol	ATP2B2-IT1
Name	ATP2B2 intronic transcript 1
Location	3p25.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236999
Ensembl biotype	lncRNA
Entrez	100874324
RNAcentral	URS0000483020 — lncRNA, 472 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000440152

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000440152 — 2 exons

Exon	Start	End
ENSE00001633294	10566255	10566471
ENSE00001648024	10570121	10570375

Expression profiles

Bgee: expression breadth broad, 34 present calls, max score 94.48.

Top tissues by expression

34 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	94.48	silver quality
monocyte	CL:0000576	57.37	gold quality
ascending aorta	UBERON:0001496	56.41	gold quality
blood	UBERON:0000178	54.62	gold quality
corpus callosum	UBERON:0002336	52.95	gold quality
prefrontal cortex	UBERON:0000451	52.66	gold quality
cortex of kidney	UBERON:0001225	52.42	gold quality
nucleus accumbens	UBERON:0001882	49.83	gold quality
right testis	UBERON:0004534	47.77	gold quality
testis	UBERON:0000473	47.19	gold quality
left testis	UBERON:0004533	46.82	gold quality
cerebellar cortex	UBERON:0002129	46.10	silver quality
gastrocnemius	UBERON:0001388	45.91	silver quality
heart left ventricle	UBERON:0002084	45.82	gold quality
cerebellar hemisphere	UBERON:0002245	45.55	silver quality
right hemisphere of cerebellum	UBERON:0014890	45.01	silver quality
subcutaneous adipose tissue	UBERON:0002190	44.75	gold quality
brain	UBERON:0000955	44.32	silver quality
amygdala	UBERON:0001876	44.25	gold quality
putamen	UBERON:0001874	42.74	silver quality
body of stomach	UBERON:0001161	42.36	silver quality
right frontal lobe	UBERON:0002810	41.97	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	41.89	gold quality
caudate nucleus	UBERON:0001873	41.49	silver quality
skin of abdomen	UBERON:0001416	41.41	silver quality
Ammon’s horn	UBERON:0001954	41.35	silver quality
esophagus mucosa	UBERON:0002469	41.20	silver quality
Brodmann (1909) area 9	UBERON:0013540	40.71	silver quality
substantia nigra	UBERON:0002038	40.56	silver quality
transverse colon	UBERON:0001157	40.46	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.49

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.