ATP2B2
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Also known as PMCA2
Summary
ATP2B2 (ATPase plasma membrane Ca2+ transporting 2, HGNC:815) is a protein-coding gene on chromosome 3p25.3, encoding Plasma membrane calcium-transporting ATPase 2 (Q01814). ATP-driven Ca(2+) ion pump involved in the maintenance of basal intracellular Ca(2+) levels in specialized cells of cerebellar circuit and vestibular and cochlear systems.
The protein encoded by this gene belongs to the family of P-type primary ion transport ATPases characterized by the formation of an aspartyl phosphate intermediate during the reaction cycle. These enzymes remove bivalent calcium ions from eukaryotic cells against very large concentration gradients and play a critical role in intracellular calcium homeostasis. The mammalian plasma membrane calcium ATPase isoforms are encoded by at least four separate genes and the diversity of these enzymes is further increased by alternative splicing of transcripts. The expression of different isoforms and splice variants is regulated in a developmental, tissue- and cell type-specific manner, suggesting that these pumps are functionally adapted to the physiological needs of particular cells and tissues. This gene encodes the plasma membrane calcium ATPase isoform 2. Alternatively spliced transcript variants encoding different isoforms have been identified.
Source: NCBI Gene 491 — RefSeq curated summary.
At a glance
- Gene–disease (curated): autosomal dominant nonsyndromic hearing loss (Definitive, ClinGen) — +2 more curated relationships
- GWAS associations: 8
- Clinical variants (ClinVar): 632 total — 30 pathogenic, 21 likely-pathogenic
- Phenotypes (HPO): 7
- MANE Select transcript:
NM_001001331
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:815 |
| Approved symbol | ATP2B2 |
| Name | ATPase plasma membrane Ca2+ transporting 2 |
| Location | 3p25.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | PMCA2 |
| Ensembl gene | ENSG00000157087 |
| Ensembl biotype | protein_coding |
| OMIM | 108733 |
| Entrez | 491 |
Gene structure
Transcript identifiers
Ensembl transcripts: 14 — 11 protein_coding, 1 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined, 1 retained_intron
ENST00000352432, ENST00000360273, ENST00000397077, ENST00000452124, ENST00000460129, ENST00000467702, ENST00000468426, ENST00000480680, ENST00000638646, ENST00000643662, ENST00000644553, ENST00000644807, ENST00000645850, ENST00000646379
RefSeq mRNA: 5 — MANE Select: NM_001001331
NM_001001331, NM_001330611, NM_001353564, NM_001363862, NM_001683
CCDS: CCDS2601, CCDS33701, CCDS82733, CCDS87040
Canonical transcript exons
ENST00000360273 — 23 exons
| Exon | Start | End |
|---|---|---|
| ENSE00003501657 | 10449345 | 10449862 |
| ENSE00003556510 | 10324023 | 10329125 |
| ENSE00003558162 | 10402091 | 10402348 |
| ENSE00003602092 | 10410618 | 10410815 |
| ENSE00003669676 | 10400953 | 10401078 |
| ENSE00003850847 | 10505465 | 10505586 |
| ENSE00003889108 | 10346031 | 10346137 |
| ENSE00003889171 | 10371809 | 10372051 |
| ENSE00003889807 | 10359882 | 10360123 |
| ENSE00003890151 | 10345384 | 10345575 |
| ENSE00003890596 | 10379243 | 10379284 |
| ENSE00003891890 | 10375430 | 10375644 |
| ENSE00003892527 | 10342752 | 10342965 |
| ENSE00003892688 | 10386480 | 10386512 |
| ENSE00003894175 | 10340493 | 10340704 |
| ENSE00003894475 | 10358691 | 10358925 |
| ENSE00003894488 | 10350112 | 10350199 |
| ENSE00003894669 | 10338176 | 10338358 |
| ENSE00003895107 | 10340242 | 10340349 |
| ENSE00003895716 | 10388277 | 10388402 |
| ENSE00003895726 | 10350398 | 10350577 |
| ENSE00003895771 | 10385268 | 10385327 |
| ENSE00003895857 | 10378252 | 10378410 |
Expression profiles
Bgee: expression breadth ubiquitous, 203 present calls, max score 99.53.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 2.8314 / max 174.6930, expressed in 150 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 41054 | 4.3105 | 154 |
| 41067 | 0.9944 | 110 |
| 41065 | 0.7811 | 99 |
| 41055 | 0.7341 | 115 |
| 41057 | 0.1963 | 89 |
| 41066 | 0.0796 | 44 |
| 41052 | 0.0261 | 9 |
| 41056 | 0.0198 | 9 |
Top tissues by expression
288 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| lateral nuclear group of thalamus | UBERON:0002736 | 99.53 | gold quality |
| endothelial cell | CL:0000115 | 98.91 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 98.86 | gold quality |
| pons | UBERON:0000988 | 98.79 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 98.75 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 98.70 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 98.45 | gold quality |
| parietal lobe | UBERON:0001872 | 98.41 | gold quality |
| occipital lobe | UBERON:0002021 | 98.41 | gold quality |
| postcentral gyrus | UBERON:0002581 | 98.27 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 98.26 | gold quality |
| primary visual cortex | UBERON:0002436 | 98.24 | gold quality |
| orbitofrontal cortex | UBERON:0004167 | 97.67 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 97.58 | gold quality |
| cerebellar cortex | UBERON:0002129 | 97.55 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 97.55 | gold quality |
| cerebellum | UBERON:0002037 | 97.14 | gold quality |
| entorhinal cortex | UBERON:0002728 | 96.65 | gold quality |
| parotid gland | UBERON:0001831 | 96.58 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 96.41 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 96.06 | gold quality |
| prefrontal cortex | UBERON:0000451 | 95.99 | gold quality |
| frontal cortex | UBERON:0001870 | 95.93 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 95.78 | gold quality |
| right frontal lobe | UBERON:0002810 | 95.76 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 95.43 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 95.35 | gold quality |
| neocortex | UBERON:0001950 | 94.80 | gold quality |
| ventral tegmental area | UBERON:0002691 | 94.41 | gold quality |
| cerebellar vermis | UBERON:0004720 | 94.37 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 6.37 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): ESR1
miRNA regulators (miRDB)
299 targeting ATP2B2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-3925-3P | 100.00 | 69.95 | 1237 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-574-5P | 100.00 | 66.01 | 989 |
| HSA-MIR-7110-3P | 100.00 | 73.18 | 2486 |
| HSA-MIR-4481 | 100.00 | 66.42 | 1669 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-520G-5P | 99.99 | 66.76 | 658 |
| HSA-MIR-10401-5P | 99.99 | 65.79 | 948 |
| HSA-MIR-6077 | 99.99 | 68.04 | 2299 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
Literature-anchored findings (GeneRIF, showing 28)
- Alternative splicing of the first intracellular loop of PMCA2 alters its membrane targeting (PMID:12624087)
- role in the intracellular Ca(2+) extrusion of syncytiotrophoblast-like structure originating from the differentiation of cultured trophoblast cells isolated from human term placenta (PMID:12784250)
- Decrease in PMCA2 transcript and protein levels and correlation between expression and disease course in two different allergic encephalomyelitis models further highlight the importance of this calcium pump in neuronal dysfunction during inflammation. (PMID:15926914)
- We conclude that PMCA2 mRNA can be highly overexpressed in some breast cancer cells. (PMID:16216224)
- plasma-membrane calcium-pump isoform 2 mutants have roles in causing digenic deafness (PMID:17234811)
- Our results indicate that a loss of PMCA such as occurs in aging brain likely leads to subtle disruptions in normal Ca(2+) signaling and enhanced susceptibility to stresses that can alter the regulation of Ca(2+) homeostasis. (PMID:17488275)
- The deaf-waddler isoform of PMCA2, operating at 30% efficacy, showed a significantly decreased ability to rescue the Ca(2+) loading of cells expressing TRPML3(A419P). (PMID:19299509)
- These data indicate that alternative splicing differentially affects the lipid interactions of PMCA2w/b and PMCA2z/b and that the apical localization of PMCA2w/b is lipid raft-dependent and sensitive to cholesterol depletion. (PMID:19379709)
- Report a novel interaction between endogenous plasma membrane calcium ATPase (PMCA) and eNOS in endothelial cells. PMCA may negatively modulate eNOS activity, and NO-dependent signal transduction pathways. (PMID:20211863)
- Apical scaffolding protein NHERF2 modulates the localization of alternatively spliced plasma membrane Ca2+ pump 2B variants in polarized epithelial cells. (PMID:20663896)
- It appears that Ca extrusion via the sarcolemmal Ca ATPase occurs only at the t-tubules, and is not regulated by basal PKA activity. (PMID:20971118)
- these data suggest that full polarization is a prerequisite for proper positioning of the PMCA2w variants in the apical membrane domain of polarized cells. (PMID:21672522)
- These results provide converging evidence for an association between ATP2B2 gene variants and autism in male subjects (PMID:21757185)
- The human mutant of PMCA2 exacerbated the deafness produced by a cadherin 23 mutation. The human mutant failed to impair the Ca(2+) ejection by the pump. (PMID:22047666)
- G293S and V586M mutations in the PMCA2 Calcium Transporting ATPase of the stereocilia are associated with deafness. (Review) (PMID:22349217)
- ATP2B2 might play a role in the etiology of autism in Chinese Han population. (PMID:23620727)
- SERCA and PMCA pump activities are strongly affected by the localization of F508del-CFTR protein. (PMID:25661196)
- PMCA2b resulted in rapid and highly PMCA abundance-sensitive clearance of store-operated Ca2+ entry-mediated Ca2+ transients. (PMID:25690014)
- PMCA2 interacts with HER2 in specific actin-rich membrane domains. (PMID:26729871)
- PMCA2 regulates breast cancer cell proliferation and sensitivity to doxorubicin in basal cell carcinoma. (PMID:27148852)
- Data show that ATPase, calcium transporting, plasma membrane 2 protein (PMCA2) silencing augmented B-cell leukemia 2 family proteins (Bcl-2) inhibitor ABT-263-mediated MDA-MB-231 breast cancer cell death. (PMID:27613092)
- NHERF1 acts with PMCA2 to regulate HER2 signaling and membrane retention in breast cancers (PMID:28235801)
- Cytoskeleton dynamics regulates plasma membrane PMCA2 activity. (PMID:28527708)
- critical role played by the PMCA2w/a pump in the control of hair cell function and survival, and provide mechanistic insight into the etiology of deafness and vestibular disorders. (PMID:29452611)
- PMCA2 loss plays a role in the ataxic phenotype, but can paradoxically also minimise calcium rises in cerebellar Purkinje neurons, thereby ensuring their resilience and survival. (PMID:29452612)
- A V1143F substitution in PMAC2 alters the binding of caslmodulin to the calmodulin-binding domain leading to impaired calcium signaling. (PMID:29655659)
- Loss-of-function variants of ATP2B2 are associated with rapidly progressive hearing impairment. (PMID:30535804)
- ATP2B2 de novo variants as a cause of variable neurodevelopmental disorders that feature dystonia, ataxia, intellectual disability, behavioral symptoms, and seizures. (PMID:37675773)
Cross-species orthologs
17 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | si:dkey-28b4.8 | ENSDARG00000002840 |
| danio_rerio | atp1a3a | ENSDARG00000018259 |
| danio_rerio | atp2b2 | ENSDARG00000063433 |
| danio_rerio | atp1a3b | ENSDARG00000104139 |
| mus_musculus | Atp2b2 | ENSMUSG00000030302 |
| rattus_norvegicus | Atp2b2 | ENSRNOG00000030269 |
| drosophila_melanogaster | anne | FBGN0052000 |
| drosophila_melanogaster | SPoCk | FBGN0052451 |
| drosophila_melanogaster | CG45062 | FBGN0266432 |
| drosophila_melanogaster | CG45063 | FBGN0266433 |
| caenorhabditis_elegans | WBGENE00000834 | |
| caenorhabditis_elegans | WBGENE00003153 | |
| caenorhabditis_elegans | pmr-1 | WBGENE00004063 |
| caenorhabditis_elegans | WBGENE00012341 | |
| caenorhabditis_elegans | WBGENE00015338 | |
| caenorhabditis_elegans | WBGENE00015660 | |
| caenorhabditis_elegans | WBGENE00019875 |
Paralogs (21): ATP2C1 (ENSG00000017260), ATP1A2 (ENSG00000018625), ATP2B4 (ENSG00000058668), ATP2C2 (ENSG00000064270), ATP2B3 (ENSG00000067842), ATP2B1 (ENSG00000070961), ATP2A3 (ENSG00000074370), ATP12A (ENSG00000075673), ATP1A3 (ENSG00000105409), ATP4A (ENSG00000105675), ATP13A1 (ENSG00000105726), ATP7B (ENSG00000123191), ATP13A4 (ENSG00000127249), ATP1A4 (ENSG00000132681), ATP13A3 (ENSG00000133657), ATP13A2 (ENSG00000159363), ATP1A1 (ENSG00000163399), ATP7A (ENSG00000165240), ATP2A2 (ENSG00000174437), ATP13A5 (ENSG00000187527), ATP2A1 (ENSG00000196296)
Protein
Protein identifiers
Plasma membrane calcium-transporting ATPase 2 — Q01814 (reviewed: Q01814)
Alternative names: Plasma membrane calcium ATPase isoform 2, Plasma membrane calcium pump isoform 2
All UniProt accessions (5): Q01814, A0A2R8Y4R4, A0A2R8Y535, A0A2U3TZI3, A0A2U3U055
UniProt curated annotations — full annotation on UniProt →
Function. ATP-driven Ca(2+) ion pump involved in the maintenance of basal intracellular Ca(2+) levels in specialized cells of cerebellar circuit and vestibular and cochlear systems. Uses ATP as an energy source to transport cytosolic Ca(2+) ions across the plasma membrane to the extracellular compartment. Has fast activation and Ca(2+) clearance rate suited to control fast neuronal Ca(2+) dynamics. At parallel fiber to Purkinje neuron synapse, mediates presynaptic Ca(2+) efflux in response to climbing fiber-induced Ca(2+) rise. Provides for fast return of Ca(2+) concentrations back to their resting levels, ultimately contributing to long-term depression induction and motor learning. Plays an essential role in hearing and balance. In cochlear hair cells, shuttles Ca(2+) ions from stereocilia to the endolymph and dissipates Ca(2+) transients generated by the opening of the mechanoelectrical transduction channels. Regulates Ca(2+) levels in the vestibular system, where it contributes to the formation of otoconia. In non-excitable cells, regulates Ca(2+) signaling through spatial control of Ca(2+) ions extrusion and dissipation of Ca(2+) transients generated by store-operated channels. In lactating mammary gland, allows for the high content of Ca(2+) ions in the milk.
Subunit / interactions. Interacts with PDZD11.
Subcellular location. Cell membrane. Synapse Apical cell membrane. Basolateral cell membrane Apical cell membrane. Basolateral cell membrane Basolateral cell membrane Basolateral cell membrane Basolateral cell membrane.
Tissue specificity. Mainly expressed in brain cortex. Found in low levels in skeletal muscle, heart muscle, stomach, liver, kidney and lung. Isoforms containing segment B are found in brain cortex and at low levels in other tissues. Isoforms containing segments X and W are found at low levels in all tissues. Isoforms containing segment A and segment Z are found at low levels in skeletal muscle and heart muscle.
Disease relevance. May act as a disease modifier. ATP2B2 variants may exacerbate the severity of non-syndromic sensorineural hearing loss in patients carrying causative variants in the CDH23 gene. Sensorineural deafness results from damage to the neural receptors of the inner ear, the nerve pathways to the brain, or the area of the brain that receives sound information. Deafness, autosomal dominant, 82 (DFNA82) [MIM:619804] A form of non-syndromic, sensorineural hearing loss. Sensorineural hearing loss results from damage to the neural receptors of the inner ear, the nerve pathways to the brain, or the area of the brain that receives sound information. DNFA82 is characterized by onset of rapidly progressive bilateral sensorineural hearing loss usually early in the first decade. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Up-regulated by calmodulin which increases the affinity of the pump for Ca(2+) ions.
Similarity. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IIB subfamily.
Isoforms (8)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q01814-1 | WB, AIIICI | yes |
| Q01814-2 | WA, AIIICII | |
| Q01814-3 | YA, AIICII | |
| Q01814-4 | ZA, AICII | |
| Q01814-5 | YB, AIICI | |
| Q01814-6 | ZB, AICI | |
| Q01814-7 | XA | |
| Q01814-8 | XB |
RefSeq proteins (5): NP_001001331, NP_001317540, NP_001340493, NP_001350791, NP_001674 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001757 | P_typ_ATPase | Family |
| IPR004014 | ATPase_P-typ_cation-transptr_N | Domain |
| IPR006068 | ATPase_P-typ_cation-transptr_C | Domain |
| IPR006408 | P-type_ATPase_IIB | Family |
| IPR008250 | ATPase_P-typ_transduc_dom_A_sf | Homologous_superfamily |
| IPR018303 | ATPase_P-typ_P_site | PTM |
| IPR022141 | ATP_Ca_trans_C | Domain |
| IPR023214 | HAD_sf | Homologous_superfamily |
| IPR023298 | ATPase_P-typ_TM_dom_sf | Homologous_superfamily |
| IPR023299 | ATPase_P-typ_cyto_dom_N | Homologous_superfamily |
| IPR036412 | HAD-like_sf | Homologous_superfamily |
| IPR044492 | P_typ_ATPase_HD_dom | Domain |
| IPR059000 | ATPase_P-type_domA | Domain |
Pfam: PF00122, PF00689, PF00690, PF08282, PF12424, PF13246
Enzyme classification (BRENDA):
- EC 7.2.2.10 — P-type Ca2+ transporter (BRENDA: 47 organisms, 90 substrates, 341 inhibitors, 34 Km, 18 kcat entries)
Substrate kinetics (BRENDA)
6 substrates with measured Km, best-characterized 6. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| CA2+ | — | 11 |
| ATP | — | 6 |
| CA2+/CIS | 0.0007–0.0013 | 3 |
| CA2+[SIDE 1] | 0.0002–0.0003 | 2 |
| SR2+ | 0.015–0.035 | 2 |
| UTP | — | 1 |
Catalyzed reactions (Rhea), 1 shown:
- Ca(2+)(in) + ATP + H2O = Ca(2+)(out) + ADP + phosphate + H(+) (RHEA:18105)
UniProt features (61 total): modified residue 14, topological domain 11, transmembrane region 10, region of interest 5, sequence variant 5, sequence conflict 5, splice variant 4, compositionally biased region 3, binding site 2, chain 1, active site 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q01814-F1 | 73.83 | 0.20 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 499 (4-aspartylphosphate intermediate)
Ligand- & substrate-binding residues (2): 820; 824
Post-translational modifications (14): 18, 1139, 1178, 1188, 1201, 1211, 1165, 1177, 1151, 1163, 1120, 1132, 1134, 1146
Function
Pathways and Gene Ontology
Reactome pathways
12 pathways
| ID | Pathway |
|---|---|
| R-HSA-418359 | Reduction of cytosolic Ca++ levels |
| R-HSA-5578775 | Ion homeostasis |
| R-HSA-936837 | Ion transport by P-type ATPases |
| R-HSA-9662360 | Sensory processing of sound by inner hair cells of the cochlea |
| R-HSA-9662361 | Sensory processing of sound by outer hair cells of the cochlea |
| R-HSA-109582 | Hemostasis |
| R-HSA-382551 | Transport of small molecules |
| R-HSA-397014 | Muscle contraction |
| R-HSA-418346 | Platelet homeostasis |
| R-HSA-418360 | Platelet calcium homeostasis |
| R-HSA-5576891 | Cardiac conduction |
| R-HSA-983712 | Ion channel transport |
MSigDB gene sets: 308 (showing top):
GSE45365_NK_CELL_VS_CD8_TCELL_DN, GOBP_CIRCULATORY_SYSTEM_PROCESS, TGCTGCT_MIR15A_MIR16_MIR15B_MIR195_MIR424_MIR497, GOBP_SENSORY_PERCEPTION_OF_MECHANICAL_STIMULUS, TTCCGTT_MIR191, CMYB_01, AAGCCAT_MIR135A_MIR135B, GOBP_NEUROGENESIS, MORF_RAD51L3, SREBP1_02, GOBP_MONOATOMIC_CATION_TRANSPORT, MODULE_66, CATRRAGC_UNKNOWN, JAZAG_TGFB1_SIGNALING_DN, CATTTCA_MIR203
GO Biological Process (9): calcium ion transport (GO:0006816), sensory perception of sound (GO:0007605), neuron differentiation (GO:0030182), monoatomic ion transmembrane transport (GO:0034220), regulation of cytosolic calcium ion concentration (GO:0051480), regulation of cardiac conduction (GO:1903779), monoatomic ion transport (GO:0006811), calcium ion transmembrane transport (GO:0070588), regulation of postsynaptic cytosolic calcium ion concentration (GO:0099566)
GO Molecular Function (11): P-type calcium transporter activity (GO:0005388), calcium ion binding (GO:0005509), calmodulin binding (GO:0005516), ATP binding (GO:0005524), ATP hydrolysis activity (GO:0016887), PDZ domain binding (GO:0030165), metal ion binding (GO:0046872), P-type calcium transporter activity involved in regulation of postsynaptic cytosolic calcium ion concentration (GO:1905059), nucleotide binding (GO:0000166), transporter activity (GO:0005215), protein binding (GO:0005515)
GO Cellular Component (11): cytoplasm (GO:0005737), plasma membrane (GO:0005886), basolateral plasma membrane (GO:0016323), apical plasma membrane (GO:0016324), dendritic spine membrane (GO:0032591), extracellular exosome (GO:0070062), postsynaptic density membrane (GO:0098839), glutamatergic synapse (GO:0098978), GABA-ergic synapse (GO:0098982), membrane (GO:0016020), synapse (GO:0045202)
Reactome top-level categories
Rollup of top-8 pathways:
| Category | Pathways |
|---|---|
| Sensory processing of sound | 2 |
| Platelet calcium homeostasis | 1 |
| Cardiac conduction | 1 |
| Ion channel transport | 1 |
| Hemostasis | 1 |
| Platelet homeostasis | 1 |
| Muscle contraction | 1 |
| Transport of small molecules | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| plasma membrane region | 2 |
| synapse | 2 |
| metal ion transport | 1 |
| sensory perception of mechanical stimulus | 1 |
| cell differentiation | 1 |
| generation of neurons | 1 |
| monoatomic ion transport | 1 |
| transmembrane transport | 1 |
| intracellular calcium ion homeostasis | 1 |
| regulation of heart contraction | 1 |
| cardiac conduction | 1 |
| transport | 1 |
| calcium ion transport | 1 |
| monoatomic cation transmembrane transport | 1 |
| regulation of cytosolic calcium ion concentration | 1 |
| postsynapse | 1 |
| calcium ion transmembrane transporter activity | 1 |
| P-type ion transporter activity | 1 |
| ATPase-coupled monoatomic cation transmembrane transporter activity | 1 |
| metal ion binding | 1 |
| protein binding | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| ribonucleoside triphosphate phosphatase activity | 1 |
| ATP-dependent activity | 1 |
| protein domain specific binding | 1 |
| cation binding | 1 |
| P-type calcium transporter activity | 1 |
| regulation of postsynaptic cytosolic calcium ion concentration | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| molecular_function | 1 |
| binding | 1 |
| intracellular anatomical structure | 1 |
| membrane | 1 |
| cell periphery | 1 |
| basal plasma membrane | 1 |
| apical part of cell | 1 |
| neuron projection membrane | 1 |
Protein interactions and networks
STRING
3524 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ATP2B2 | CDH23 | Q9H251 | 897 |
| ATP2B2 | CALM1 | P02593 | 895 |
| ATP2B2 | CALML3 | P27482 | 892 |
| ATP2B2 | CALML5 | Q9NZT1 | 892 |
| ATP2B2 | CALML6 | Q8TD86 | 887 |
| ATP2B2 | CALML4 | Q96GE6 | 887 |
| ATP2B2 | PCDH15 | Q96QU1 | 800 |
| ATP2B2 | OC90 | Q02509 | 789 |
| ATP2B2 | OTOP1 | Q7RTM1 | 759 |
| ATP2B2 | NHERF1 | O14745 | 728 |
| ATP2B2 | NHERF2 | Q15599 | 697 |
| ATP2B2 | MYO7A | P78427 | 689 |
| ATP2B2 | SLC8A1 | P32418 | 671 |
| ATP2B2 | ITPR1 | Q14643 | 670 |
| ATP2B2 | E9PNW1 | E9PNW1 | 667 |
IntAct
113 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| RXYLT1 | FKTN | psi-mi:“MI:0914”(association) | 0.710 |
| NIPAL1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.640 |
| EIF2B2 | SLC27A2 | psi-mi:“MI:0914”(association) | 0.640 |
| CXCR4 | TMEM120B | psi-mi:“MI:0914”(association) | 0.530 |
| HTR2C | KLRG2 | psi-mi:“MI:0914”(association) | 0.530 |
| LPAR4 | POTEF | psi-mi:“MI:0914”(association) | 0.530 |
| SLC2A5 | RBFOX3 | psi-mi:“MI:0914”(association) | 0.530 |
| VSIG4 | TCAF2 | psi-mi:“MI:0914”(association) | 0.530 |
| PCDHGB1 | FAM171A2 | psi-mi:“MI:0914”(association) | 0.530 |
| EFNB2 | FAM171A2 | psi-mi:“MI:0914”(association) | 0.530 |
| NUFIP1 | PDE2A | psi-mi:“MI:0914”(association) | 0.530 |
| SPRING1 | PLSCR1 | psi-mi:“MI:0914”(association) | 0.530 |
| GALNT6 | NDUFS4 | psi-mi:“MI:0914”(association) | 0.530 |
| GPR161 | USP12 | psi-mi:“MI:0914”(association) | 0.530 |
| PTGIR | TMEM63A | psi-mi:“MI:0914”(association) | 0.530 |
| SLC22A16 | APBA3 | psi-mi:“MI:0914”(association) | 0.530 |
| ENTPD7 | PGK2 | psi-mi:“MI:0914”(association) | 0.530 |
| FAM174A | BLTP3B | psi-mi:“MI:0914”(association) | 0.530 |
| CCR6 | PODXL | psi-mi:“MI:0914”(association) | 0.530 |
| NPTN | TNPO2 | psi-mi:“MI:0914”(association) | 0.530 |
| CALCA | ATP2B4 | psi-mi:“MI:0914”(association) | 0.500 |
| ATP2B2 | CALCA | psi-mi:“MI:0915”(physical association) | 0.500 |
| SCRIB | ATP2B2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| PTPRQ | NHERF1 | psi-mi:“MI:0914”(association) | 0.350 |
| TSPO | psi-mi:“MI:0914”(association) | 0.350 | |
| CD81 | PVR | psi-mi:“MI:0914”(association) | 0.350 |
| SST | ATP1A2 | psi-mi:“MI:0914”(association) | 0.350 |
| ITM2B | ILVBL | psi-mi:“MI:0914”(association) | 0.350 |
| ATP2B2 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (295): ATP2B2 (Affinity Capture-MS), ATP2B2 (Affinity Capture-MS), ATP2B2 (Affinity Capture-MS), ATP2B2 (Affinity Capture-MS), ATP2B2 (Affinity Capture-MS), ATP2B2 (Affinity Capture-MS), ATP2B2 (Affinity Capture-MS), ATP2B2 (Affinity Capture-MS), ATP2B2 (Affinity Capture-MS), ATP2B2 (Affinity Capture-MS), ATP2B2 (Affinity Capture-MS), ATP2B2 (Affinity Capture-MS), ATP2B2 (Affinity Capture-MS), ATP2B2 (Affinity Capture-MS), ATP2B2 (Affinity Capture-MS)
ESM2 similar proteins: A0A143ZZK9, A5IYF2, A6ZQM4, B3LQ11, B9QMJ0, B9WLN5, D3K0R6, G5E829, G5EFR6, J9VQQ3, O13397, O13398, P11505, P11506, P13586, P13587, P20020, P22189, P23220, P23634, P32660, P38929, P39677, P54678, P54679, P58165, Q00804, Q01814, Q01896, Q06698, Q12675, Q12691, Q16720, Q54L53, Q54SW3, Q54TV1, Q54TV2, Q55CP6, Q5A6N1, Q64542
Diamond homologs: A3FIN4, B1AWN4, C7EXK4, D4AA47, G0S196, G2X7W6, O43520, O54827, O60312, O94296, O94823, P11506, P32660, P39524, P54678, P57792, P70704, P98196, P98197, P98198, P98199, P98200, P98204, Q01814, Q09891, Q12675, Q148W0, Q29449, Q5BL50, Q6DFW5, Q6UQ17, Q8K2X1, Q8TF62, Q9GKS6, Q9LI83, Q9LK90, Q9LNQ4, Q9LVK9, Q9N0Z4, Q9NTI2
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| ATP8B1 | up-regulates | ATP2B2 | |
| ATP2B2 | “down-regulates quantity” | calcium(2+) | relocalization |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 168 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Ion transport by P-type ATPases | 6 | 10.9× | 3e-03 |
| Class A/1 (Rhodopsin-like receptors) | 10 | 6.5× | 2e-03 |
| G alpha (s) signalling events | 9 | 5.8× | 3e-03 |
| GPCR ligand binding | 10 | 5.6× | 3e-03 |
| Signaling by GPCR | 12 | 4.2× | 3e-03 |
| GPCR downstream signalling | 11 | 4.2× | 6e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| regulation of cytosolic calcium ion concentration | 5 | 12.9× | 6e-03 |
| adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway | 6 | 8.9× | 8e-03 |
| positive regulation of cytosolic calcium ion concentration | 11 | 8.7× | 7e-05 |
| phospholipase C-activating G protein-coupled receptor signaling pathway | 9 | 8.0× | 6e-04 |
| adenylate cyclase-activating G protein-coupled receptor signaling pathway | 10 | 7.6× | 3e-04 |
| G protein-coupled receptor signaling pathway | 18 | 4.4× | 8e-05 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
632 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 30 |
| Likely pathogenic | 21 |
| Uncertain significance | 290 |
| Likely benign | 165 |
| Benign | 98 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1360768 | NM_001001331.4(ATP2B2):c.3058dup (p.Arg1020fs) | Pathogenic |
| 1400721 | NM_001001331.4(ATP2B2):c.1713C>A (p.Cys571Ter) | Pathogenic |
| 148687 | GRCh38/hg38 3p25.3(chr3:9875909-10572677)x1 | Pathogenic |
| 148942 | GRCh38/hg38 3p26.3-24.1(chr3:32241-30064208)x3 | Pathogenic |
| 1525986 | NM_001001331.4(ATP2B2):c.955del (p.Ala319fs) | Pathogenic |
| 1525987 | NM_001001331.4(ATP2B2):c.2329C>T (p.Arg777Ter) | Pathogenic |
| 1525988 | NM_001001331.4(ATP2B2):c.1963G>T (p.Glu655Ter) | Pathogenic |
| 1525989 | NM_001001331.4(ATP2B2):c.1998C>A (p.Cys666Ter) | Pathogenic |
| 1699521 | NM_001001331.4(ATP2B2):c.2461G>A (p.Gly821Arg) | Pathogenic |
| 1997758 | NM_001001331.4(ATP2B2):c.532C>T (p.Gln178Ter) | Pathogenic |
| 2006763 | NM_001001331.4(ATP2B2):c.2920G>T (p.Glu974Ter) | Pathogenic |
| 2018216 | NM_001001331.4(ATP2B2):c.2726_2729dup (p.Met910fs) | Pathogenic |
| 2080750 | NM_001001331.4(ATP2B2):c.1924dup (p.Ala642fs) | Pathogenic |
| 2424613 | NC_000003.11:g.(?10094051)(11078652_?)del | Pathogenic |
| 2816938 | NM_001001331.4(ATP2B2):c.1989del (p.Met664fs) | Pathogenic |
| 2836858 | NM_001001331.4(ATP2B2):c.1123A>T (p.Lys375Ter) | Pathogenic |
| 2844808 | NM_001001331.4(ATP2B2):c.178del (p.Leu60fs) | Pathogenic |
| 2976958 | NM_001001331.4(ATP2B2):c.896_899del (p.Lys299fs) | Pathogenic |
| 3067646 | NM_001001331.4(ATP2B2):c.2515del (p.Ile839fs) | Pathogenic |
| 3336824 | NM_001001331.4(ATP2B2):c.3259del (p.Ser1087fs) | Pathogenic |
| 3366952 | NM_001001331.4(ATP2B2):c.1043-2A>G | Pathogenic |
| 3661593 | NM_001001331.4(ATP2B2):c.2492C>T (p.Ala831Val) | Pathogenic |
| 3722000 | NM_001001331.4(ATP2B2):c.1761dup (p.Arg588fs) | Pathogenic |
| 3728302 | NM_001001331.4(ATP2B2):c.1503del (p.Gly502fs) | Pathogenic |
| 4690272 | NM_001001331.4(ATP2B2):c.358G>A (p.Gly120Arg) | Pathogenic |
| 4714251 | NM_001001331.4(ATP2B2):c.2870del (p.Gly957fs) | Pathogenic |
| 4724146 | NM_001001331.4(ATP2B2):c.2261_2264del (p.Phe754fs) | Pathogenic |
| 4730226 | NM_001001331.4(ATP2B2):c.272del (p.Lys91fs) | Pathogenic |
| 4822875 | NM_001001331.4(ATP2B2):c.2152del (p.Arg718fs) | Pathogenic |
| 917514 | NM_001001331.4(ATP2B2):c.1033C>T (p.Gln345Ter) | Pathogenic |
SpliceAI
4103 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 3:10329121:CGGAT:C | acceptor_gain | 1.0000 |
| 3:10329123:GATCT:G | acceptor_loss | 1.0000 |
| 3:10329126:C:CC | acceptor_gain | 1.0000 |
| 3:10329127:T:G | acceptor_loss | 1.0000 |
| 3:10336215:T:TA | donor_gain | 1.0000 |
| 3:10338171:TGTAC:T | donor_loss | 1.0000 |
| 3:10338172:GTAC:G | donor_loss | 1.0000 |
| 3:10338173:TA:T | donor_loss | 1.0000 |
| 3:10338175:C:CG | donor_loss | 1.0000 |
| 3:10338357:ACC:A | acceptor_loss | 1.0000 |
| 3:10338359:C:CC | acceptor_gain | 1.0000 |
| 3:10338359:C:T | acceptor_loss | 1.0000 |
| 3:10338360:T:A | acceptor_loss | 1.0000 |
| 3:10340346:CTAT:C | acceptor_gain | 1.0000 |
| 3:10340360:C:CT | acceptor_gain | 1.0000 |
| 3:10340361:A:T | acceptor_gain | 1.0000 |
| 3:10340368:C:CT | acceptor_gain | 1.0000 |
| 3:10340369:A:T | acceptor_gain | 1.0000 |
| 3:10340489:CTA:C | donor_gain | 1.0000 |
| 3:10340490:TAC:T | donor_loss | 1.0000 |
| 3:10340492:C:CA | donor_loss | 1.0000 |
| 3:10340700:CTCGC:C | acceptor_gain | 1.0000 |
| 3:10340702:CGC:C | acceptor_gain | 1.0000 |
| 3:10340703:GC:G | acceptor_gain | 1.0000 |
| 3:10340704:CC:C | acceptor_gain | 1.0000 |
| 3:10340705:C:CC | acceptor_gain | 1.0000 |
| 3:10340705:CTG:C | acceptor_loss | 1.0000 |
| 3:10340709:C:CT | acceptor_gain | 1.0000 |
| 3:10342746:GCTCA:G | donor_loss | 1.0000 |
| 3:10342747:CTCA:C | donor_loss | 1.0000 |
AlphaMissense
8226 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 3:10329105:G:C | F1147L | 1.000 |
| 3:10329105:G:T | F1147L | 1.000 |
| 3:10329107:A:G | F1147L | 1.000 |
| 3:10338186:A:T | I1137N | 1.000 |
| 3:10338189:C:G | R1136P | 1.000 |
| 3:10338208:A:G | W1130R | 1.000 |
| 3:10338208:A:T | W1130R | 1.000 |
| 3:10340250:A:G | W1077R | 1.000 |
| 3:10340250:A:T | W1077R | 1.000 |
| 3:10340289:A:G | W1064R | 1.000 |
| 3:10340289:A:T | W1064R | 1.000 |
| 3:10340311:G:C | C1056W | 1.000 |
| 3:10340581:C:G | R1014P | 1.000 |
| 3:10340582:G:T | R1014S | 1.000 |
| 3:10340625:G:C | F999L | 1.000 |
| 3:10340625:G:T | F999L | 1.000 |
| 3:10340627:A:G | F999L | 1.000 |
| 3:10342832:A:T | L946H | 1.000 |
| 3:10342859:C:A | R937M | 1.000 |
| 3:10342892:G:T | A926D | 1.000 |
| 3:10342895:A:G | L925P | 1.000 |
| 3:10342895:A:T | L925Q | 1.000 |
| 3:10342901:A:G | L923P | 1.000 |
| 3:10342907:G:T | A921D | 1.000 |
| 3:10342915:G:C | D918E | 1.000 |
| 3:10342915:G:T | D918E | 1.000 |
| 3:10342916:T:A | D918V | 1.000 |
| 3:10342916:T:C | D918G | 1.000 |
| 3:10342916:T:G | D918A | 1.000 |
| 3:10342917:C:G | D918H | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000003964 (3:10608361 C>A), RS1000007150 (3:10457920 C>G,T), RS1000012612 (3:10385770 C>A), RS1000017550 (3:10656472 C>A,T), RS1000019117 (3:10491412 G>A), RS1000022263 (3:10451165 G>T), RS1000027214 (3:10644926 T>C), RS1000032727 (3:10604934 C>T), RS1000043229 (3:10418104 G>A,C), RS1000046425 (3:10611047 C>T), RS1000053378 (3:10383099 T>C,G), RS1000062082 (3:10374649 G>A), RS1000078556 (3:10610783 C>T), RS1000087894 (3:10336088 G>A), RS1000088384 (3:10460251 C>T)
Disease associations
OMIM: gene MIM:108733 | disease phenotypes: MIM:619804, MIM:218000, MIM:616421, MIM:601386, MIM:124900
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| hearing loss, autosomal dominant 82 | Definitive | Autosomal dominant |
| autosomal dominant nonsyndromic hearing loss | Definitive | Autosomal dominant |
| neurodevelopmental disorder | Strong | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| autosomal dominant nonsyndromic hearing loss | Definitive | AD |
Mondo (8): hearing loss disorder (MONDO:0005365), neurodevelopmental disorder (MONDO:0700092), hearing loss, autosomal dominant 82 (MONDO:0030719), agenesis of the corpus callosum with peripheral neuropathy (MONDO:0000902), epilepsy with myoclonic atonic seizures (MONDO:0014633), autosomal recessive nonsyndromic hearing loss 12 (MONDO:0011067), intellectual disability (MONDO:0001071), autosomal dominant nonsyndromic hearing loss (MONDO:0019587)
Orphanet (5): Corpus callosum agenesis-neuronopathy syndrome (Orphanet:1496), Epilepsy with myoclonic-atonic seizures (Orphanet:1942), Rare autosomal recessive non-syndromic sensorineural deafness type DFNB (Orphanet:90636), Rare autosomal dominant non-syndromic sensorineural deafness type DFNA (Orphanet:90635), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
7 total (7 of 7 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000360 | Tinnitus |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0003577 | Congenital onset |
| HP:0003596 | Middle age onset |
| HP:0003621 | Juvenile onset |
| HP:0011463 | Childhood onset |
GWAS associations
8 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000274_8 | Metabolite levels | 1.000000e-07 |
| GCST002337_149 | Amyotrophic lateral sclerosis (sporadic) | 7.000000e-06 |
| GCST002932_14 | Manganese levels | 7.000000e-06 |
| GCST003075_81 | Cognitive decline rate in late mild cognitive impairment | 5.000000e-07 |
| GCST004521_106 | Autism spectrum disorder or schizophrenia | 2.000000e-08 |
| GCST008103_75 | Bipolar disorder | 9.000000e-07 |
| GCST012490_371 | Femur bone mineral density x serum urate levels interaction | 3.000000e-08 |
| GCST90020028_769 | Hip circumference adjusted for BMI | 7.000000e-09 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005001 | phenylalanine measurement |
| EFO:0007710 | cognitive decline measurement |
| EFO:0004531 | urate measurement |
| EFO:0008039 | BMI-adjusted hip circumference |
MeSH disease descriptors (5)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D034381 | Hearing Loss | C09.218.458.341; C10.597.751.418.341; C23.888.592.763.393.341 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D065886 | Neurodevelopmental Disorders | F03.625 |
| C536446 | Corpus callosum agenesis neuronopathy (supp.) | |
| C563327 | Deafness, Autosomal Recessive 12 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: transporter — P2B P-type ATPases: Ca2+-ATPases
CTD chemical–gene interactions
32 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, decreases expression, increases methylation | 3 |
| Valproic Acid | affects expression, increases methylation | 2 |
| Aflatoxin B1 | decreases expression, decreases methylation, increases methylation | 2 |
| aristolochic acid I | increases expression | 1 |
| dicrotophos | increases expression | 1 |
| methylmercuric chloride | increases expression | 1 |
| methyleugenol | decreases expression | 1 |
| O,O-diethyl O-3,5,6-trichloro-2-pyridyl phosphate | affects expression, affects response to substance | 1 |
| ethyl-p-hydroxybenzoate | decreases expression | 1 |
| sodium arsenite | increases expression | 1 |
| butyraldehyde | increases expression | 1 |
| manganese chloride | decreases expression, increases methylation | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| aflatoxin B2 | increases methylation | 1 |
| perfluoro-n-nonanoic acid | decreases expression | 1 |
| 3-(4’-hydroxy-3’-adamantylbiphenyl-4-yl)acrylic acid | decreases expression | 1 |
| theaflavin-3,3’-digallate | affects expression | 1 |
| Sunitinib | decreases expression | 1 |
| Leflunomide | increases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Arsenic | affects methylation | 1 |
| Carbamazepine | affects expression | 1 |
| Methapyrilene | increases methylation | 1 |
| Triclosan | decreases expression | 1 |
| Urethane | decreases expression | 1 |
| Vanadium | increases expression | 1 |
| 1-Methyl-4-phenylpyridinium | decreases expression | 1 |
| Uranium Compounds | increases expression | 1 |
| Cadmium Chloride | increases expression | 1 |
| Okadaic Acid | decreases expression | 1 |
Cellosaurus cell lines
1 cell lines: 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_E9XZ | HEK293-ATP2B2-RFP | Transformed cell line | Female |
Clinical trials (associated diseases)
501 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04586348 | PHASE4 | UNKNOWN | Prenatal Iodine Supplementation and Early Childhood Neurodevelopment |
| NCT04873115 | PHASE4 | UNKNOWN | Double-blind, Placebo-controlled, Randomized Clinical Trial Comparing the Efficacy and Safety of Sialanar Plus orAl rehabiLitation Against Placebo Plus Oral Rehabilitation for chIldren and Adolescents With seVere Sialorrhoea and Neurodisabilties, |
| NCT00205881 | PHASE4 | COMPLETED | Bilateral Benefit in Adult Users of the HiRes 90K Bionic Ear System |
| NCT00331539 | PHASE4 | UNKNOWN | Relationship Between Auto NRT and Behavioural T & C Levels With the Nucleus Freedom Cochlear Implant |
| NCT00424307 | PHASE4 | UNKNOWN | Bilateral Cochlear Implant Benefit in Young Children |
| NCT00765635 | PHASE4 | COMPLETED | Chlorobutanol, Potassium Carbonate, and Irrigation in Cerumen Removal |
| NCT03321006 | PHASE4 | COMPLETED | Treating Hearing Loss to Improve Mood and Cognition in Older Adults |
| NCT02559102 | PHASE3 | COMPLETED | Dexmedetomidine Sedation Versus General Anaesthesia for Inguinal Hernia Surgery in Infants |
| NCT02757079 | PHASE3 | COMPLETED | Study of the Efficacy and Safety of NPC-15 for Sleep Disorders of Children With Neurodevelopmental Disorders |
| NCT06915480 | PHASE3 | RECRUITING | Reducing Missed Appointments |
| NCT07377032 | PHASE3 | RECRUITING | TAP-GRIN: Interventional Study on Patients With GRIN-related Neurodevelopmental Disorders |
| NCT01499901 | PHASE3 | WITHDRAWN | Comparison of the Bilateral Sequential and Simultaneous Cochlear Implantation in the Deaf Children |
| NCT02561091 | PHASE3 | COMPLETED | AM-111 in the Treatment of Acute Inner Ear Hearing Loss |
| NCT03331627 | PHASE3 | COMPLETED | Safety and Efficacy of STR001-IT and STR001-ER in Patients With SSHL |
| NCT05532657 | PHASE3 | ACTIVE_NOT_RECRUITING | ACHIEVE Brain Health Follow-Up Study |
| NCT02909959 | PHASE2 | COMPLETED | Sulforaphane for the Treatment of Young Men With Autism Spectrum Disorder |
| NCT06081348 | PHASE2 | RECRUITING | Sertraline vs. Placebo in the Treatment of Anxiety in Children and AdoLescents With NeurodevelopMental Disorders |
| NCT06352372 | PHASE2 | COMPLETED | Safety and Efficacy of tPBM for Epileptiform Activity in Autism |
| NCT00013455 | PHASE2 | COMPLETED | Quantifying Auditory Perceptual Learning Following Hearing Aid Fitting |
| NCT00323427 | PHASE2 | COMPLETED | Clinical Trial of the Living Well With Hearing Loss Workshop |
| NCT00552786 | PHASE2 | COMPLETED | Antioxidation Medication for Noise-induced Hearing Loss |
| NCT00802425 | PHASE2 | COMPLETED | Efficacy of AM-111 in Patients With Acute Sensorineural Hearing Loss |
| NCT01139281 | PHASE2 | COMPLETED | The Protective Effect of Ginkgo Biloba Extract on Cisplatin-induced Ototoxicity in Humans |
| NCT01451853 | PHASE2 | UNKNOWN | SPI-1005 for Prevention and Treatment of Chemotherapy Induced Hearing Loss |
| NCT01588925 | PHASE2 | COMPLETED | Hearing Preservation Using Dexamethasone and Hyaluronic Acid for Cochlear Implantation |
| NCT01773278 | PHASE2 | RECRUITING | Cholesterol and Antioxidant Treatment in Patients With Smith-Lemli-Opitz Syndrome (SLOS) |
| NCT02832128 | PHASE2 | COMPLETED | Evaluating Possible Improvement in Speech and Hearing Tests After 28 Days of Dosing of the Study Drug AUT00063 Compared to Placebo (QuicKfire) |
| NCT04915183 | PHASE2 | RECRUITING | Atorvastatin to Reduce Cisplatin-Induced Hearing Loss Among Individuals With Head and Neck Cancer |
| NCT05258773 | PHASE2 | COMPLETED | Evaluation of the Presence of SENS-401 in the Perilymph |
| NCT06340633 | PHASE2 | RECRUITING | SPI-1005 in Adults Receiving Cochlear Implant |
| NCT00503191 | PHASE1 | COMPLETED | NeuroModulation Technique Treatment of Autism |
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Related Atlas pages
- Associated diseases: neurodevelopmental disorder, hearing loss, autosomal dominant 82, autosomal dominant nonsyndromic hearing loss
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): agenesis of the corpus callosum with peripheral neuropathy, autosomal dominant nonsyndromic hearing loss, autosomal recessive nonsyndromic hearing loss 12, epilepsy with myoclonic atonic seizures, hearing loss, autosomal dominant 82, neurodevelopmental disorder