ATP2C2-AS1

Summary

ATP2C2-AS1 (ATP2C2 antisense RNA 1, HGNC:53167) is a long non-coding RNA gene on chromosome 16q24.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53167
Approved symbol	ATP2C2-AS1
Name	ATP2C2 antisense RNA 1
Location	16q24.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-517C16.2-001, RP11-517C16.2
Ensembl gene	ENSG00000261286
Ensembl biotype	lncRNA
Entrez	105371374
RNAcentral	URS000050A665 — lncRNA, 2998 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000565700

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000565700 — 3 exons

Exon	Start	End
ENSE00002600941	84461695	84462999
ENSE00002609404	84467304	84467361
ENSE00002622091	84459259	84460893

Expression profiles

Bgee: expression breadth ubiquitous, 148 present calls, max score 87.22.

Top tissues by expression

242 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.22	gold quality
nasal cavity epithelium	UBERON:0005384	86.75	gold quality
cardiac muscle of right atrium	UBERON:0003379	83.93	gold quality
left ventricle myocardium	UBERON:0006566	83.55	gold quality
upper arm skin	UBERON:0004263	78.03	gold quality
kidney epithelium	UBERON:0004819	77.93	gold quality
parotid gland	UBERON:0001831	77.41	gold quality
pancreatic ductal cell	CL:0002079	77.38	silver quality
vastus lateralis	UBERON:0001379	77.06	gold quality
quadriceps femoris	UBERON:0001377	76.17	gold quality
tendon of biceps brachii	UBERON:0008188	75.91	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	74.61	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	73.94	gold quality
skeletal muscle tissue	UBERON:0001134	73.34	gold quality
sperm	CL:0000019	72.92	gold quality
epithelial cell of pancreas	CL:0000083	72.92	gold quality
biceps brachii	UBERON:0001507	72.42	gold quality
vena cava	UBERON:0004087	71.64	gold quality
body of tongue	UBERON:0011876	71.23	gold quality
mucosa of transverse colon	UBERON:0004991	71.02	gold quality
pericardium	UBERON:0002407	70.91	gold quality
heart right ventricle	UBERON:0002080	70.85	gold quality
substantia nigra pars reticulata	UBERON:0001966	70.68	gold quality
substantia nigra pars compacta	UBERON:0001965	70.42	silver quality
cerebellar vermis	UBERON:0004720	70.04	gold quality
deltoid	UBERON:0001476	69.91	gold quality
layer of synovial tissue	UBERON:0007616	69.79	gold quality
epithelium of mammary gland	UBERON:0003244	69.11	gold quality
mammary duct	UBERON:0001765	69.03	gold quality
transverse colon	UBERON:0001157	68.75	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.43

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.