ATP6V0D1-DT

Summary

ATP6V0D1-DT (ATP6V0D1 divergent transcript, HGNC:55268) is a long non-coding RNA gene on chromosome 16q22.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55268
Approved symbol	ATP6V0D1-DT
Name	ATP6V0D1 divergent transcript
Location	16q22.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000270049
Ensembl biotype	lncRNA
Entrez	101927837
RNAcentral	URS00026A1C6C — lncRNA, 2426 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000602476, ENST00000602592, ENST00000602596, ENST00000635000, ENST00000653151, ENST00000656196, ENST00000659360, ENST00000748739, ENST00000748740

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000602476 — 2 exons

Exon	Start	End
ENSE00003364926	67484242	67484328
ENSE00003381288	67486814	67487250

Expression profiles

Bgee: expression breadth ubiquitous, 159 present calls, max score 78.84.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 3.2221 / max 108.3331, expressed in 1304 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
154637	3.2221	1304

Top tissues by expression

247 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.84	gold quality
monocyte	CL:0000576	77.81	gold quality
leukocyte	CL:0000738	77.53	gold quality
colonic epithelium	UBERON:0000397	76.60	gold quality
bone marrow cell	CL:0002092	75.57	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	74.60	gold quality
spleen	UBERON:0002106	74.31	gold quality
granulocyte	CL:0000094	74.27	gold quality
adenohypophysis	UBERON:0002196	72.94	gold quality
lymph node	UBERON:0000029	72.76	gold quality
right uterine tube	UBERON:0001302	72.18	gold quality
stromal cell of endometrium	CL:0002255	71.99	gold quality
vermiform appendix	UBERON:0001154	71.60	gold quality
pituitary gland	UBERON:0000007	71.57	gold quality
apex of heart	UBERON:0002098	71.36	gold quality
metanephros cortex	UBERON:0010533	71.18	gold quality
mucosa of transverse colon	UBERON:0004991	70.92	gold quality
right atrium auricular region	UBERON:0006631	70.40	gold quality
blood	UBERON:0000178	70.03	gold quality
small intestine Peyer’s patch	UBERON:0003454	69.97	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	69.97	gold quality
right lobe of thyroid gland	UBERON:0001119	69.89	gold quality
right frontal lobe	UBERON:0002810	69.76	gold quality
body of uterus	UBERON:0009853	69.71	gold quality
cardiac atrium	UBERON:0002081	69.64	gold quality
anterior cingulate cortex	UBERON:0009835	69.53	gold quality
right ovary	UBERON:0002118	69.45	gold quality
islet of Langerhans	UBERON:0000006	69.33	gold quality
Brodmann (1909) area 9	UBERON:0013540	69.30	gold quality
left ovary	UBERON:0002119	69.26	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.70

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.