ATP7B
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Summary
ATP7B (ATPase copper transporting beta, HGNC:870) is a protein-coding gene on chromosome 13q14.3, encoding Copper-transporting ATPase 2 (P35670). Copper ion transmembrane transporter involved in the export of copper out of the cells.
This gene is a member of the P-type cation transport ATPase family and encodes a protein with several membrane-spanning domains, an ATPase consensus sequence, a hinge domain, a phosphorylation site, and at least 2 putative copper-binding sites. This protein is a monomer, and functions as a copper-transporting ATPase which exports copper out of the cells, such as the efflux of hepatic copper into the bile. Alternate transcriptional splice variants, encoding different isoforms with distinct cellular localizations, have been characterized. Mutations in this gene have been associated with Wilson disease which is characterized by copper accumulation.
Source: NCBI Gene 540 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Wilson disease (Definitive, ClinGen)
- GWAS associations: 3
- Clinical variants (ClinVar): 3,682 total — 326 pathogenic, 313 likely-pathogenic
- Phenotypes (HPO): 106
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity no evidence
- MANE Select transcript:
NM_000053
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:870 |
| Approved symbol | ATP7B |
| Name | ATPase copper transporting beta |
| Location | 13q14.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000123191 |
| Ensembl biotype | protein_coding |
| OMIM | 606882 |
| Entrez | 540 |
Gene structure
Transcript identifiers
Ensembl transcripts: 32 — 15 protein_coding, 9 retained_intron, 5 protein_coding_CDS_not_defined, 3 nonsense_mediated_decay
ENST00000242839, ENST00000400366, ENST00000400370, ENST00000418097, ENST00000448424, ENST00000466629, ENST00000482841, ENST00000483772, ENST00000634296, ENST00000634308, ENST00000634519, ENST00000634620, ENST00000634810, ENST00000634844, ENST00000635406, ENST00000673696, ENST00000673772, ENST00000673789, ENST00000673844, ENST00000673864, ENST00000673867, ENST00000673923, ENST00000674078, ENST00000674126, ENST00000674147, ENST00000713659, ENST00000713660, ENST00000873567, ENST00000873568, ENST00000873569, ENST00000873570, ENST00000911501
RefSeq mRNA: 41 — MANE Select: NM_000053
NM_000053, NM_001005918, NM_001243182, NM_001330578, NM_001330579, NM_001406511, NM_001406512, NM_001406513, NM_001406514, NM_001406515, NM_001406516, NM_001406517, NM_001406518, NM_001406519, NM_001406520, NM_001406521, NM_001406522, NM_001406523, NM_001406524, NM_001406525, NM_001406526, NM_001406527, NM_001406528, NM_001406530, NM_001406531, NM_001406532, NM_001406534, NM_001406535, NM_001406536, NM_001406537, NM_001406538, NM_001406539, NM_001406540, NM_001406541, NM_001406542, NM_001406543, NM_001406544, NM_001406545, NM_001406546, NM_001406547, NM_001406548
CCDS: CCDS41892, CCDS45049, CCDS58293, CCDS81768, CCDS91810
Canonical transcript exons
ENST00000242839 — 21 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001595712 | 51937476 | 51937679 |
| ENSE00001612752 | 51937276 | 51937393 |
| ENSE00001665491 | 51935593 | 51935695 |
| ENSE00001687534 | 51939051 | 51939193 |
| ENSE00001770820 | 51941081 | 51941224 |
| ENSE00001778246 | 51961837 | 51961913 |
| ENSE00001797943 | 51960148 | 51960322 |
| ENSE00003462675 | 51973935 | 51975168 |
| ENSE00003473904 | 51957516 | 51957607 |
| ENSE00003510725 | 51942386 | 51942554 |
| ENSE00003512267 | 51970492 | 51970749 |
| ENSE00003543248 | 51946284 | 51946478 |
| ENSE00003556217 | 51958311 | 51958544 |
| ENSE00003562768 | 51968444 | 51968607 |
| ENSE00003568701 | 51944109 | 51944291 |
| ENSE00003573120 | 51950007 | 51950161 |
| ENSE00003609375 | 51964872 | 51965033 |
| ENSE00003684567 | 51950272 | 51950399 |
| ENSE00003897275 | 51932669 | 51935029 |
| ENSE00004020597 | 52011287 | 52011450 |
| ENSE00004020598 | 51949662 | 51949796 |
Expression profiles
Bgee: expression breadth ubiquitous, 205 present calls, max score 90.58.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 3.4204 / max 74.5436, expressed in 1190 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 137406 | 2.6497 | 1154 |
| 137405 | 0.5676 | 170 |
| 137404 | 0.0849 | 33 |
| 137403 | 0.0707 | 36 |
| 137396 | 0.0192 | 3 |
| 137398 | 0.0179 | 7 |
| 137397 | 0.0104 | 4 |
Top tissues by expression
291 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| nasal cavity epithelium | UBERON:0005384 | 90.58 | gold quality |
| right testis | UBERON:0004534 | 87.08 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 86.92 | gold quality |
| left testis | UBERON:0004533 | 86.75 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 86.12 | gold quality |
| jejunal mucosa | UBERON:0000399 | 85.79 | gold quality |
| right lobe of liver | UBERON:0001114 | 85.64 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 85.52 | gold quality |
| testis | UBERON:0000473 | 84.27 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 83.33 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 83.09 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 82.50 | gold quality |
| liver | UBERON:0002107 | 82.02 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 81.75 | gold quality |
| cerebellar cortex | UBERON:0002129 | 81.62 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 81.57 | gold quality |
| gall bladder | UBERON:0002110 | 81.36 | gold quality |
| secondary oocyte | CL:0000655 | 80.96 | gold quality |
| apex of heart | UBERON:0002098 | 80.79 | gold quality |
| pancreatic ductal cell | CL:0002079 | 80.21 | gold quality |
| duodenum | UBERON:0002114 | 80.12 | gold quality |
| cerebellum | UBERON:0002037 | 79.14 | gold quality |
| cortical plate | UBERON:0005343 | 78.65 | gold quality |
| ganglionic eminence | UBERON:0004023 | 78.06 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 77.93 | gold quality |
| ventricular zone | UBERON:0003053 | 77.56 | gold quality |
| oocyte | CL:0000023 | 77.55 | gold quality |
| transverse colon | UBERON:0001157 | 76.45 | gold quality |
| colonic epithelium | UBERON:0000397 | 76.31 | gold quality |
| omental fat pad | UBERON:0010414 | 76.14 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-8060 | yes | 91.50 |
| E-ANND-3 | yes | 6.23 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
93 targeting ATP7B, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-6758-5P | 100.00 | 66.21 | 1470 |
| HSA-MIR-6856-5P | 100.00 | 65.47 | 1298 |
| HSA-MIR-10401-5P | 99.99 | 65.79 | 948 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-4458 | 99.96 | 71.64 | 1650 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-3912-5P | 99.95 | 66.11 | 925 |
| HSA-MIR-548J-3P | 99.94 | 72.61 | 4881 |
| HSA-MIR-6721-5P | 99.93 | 68.92 | 2981 |
| HSA-MIR-548AE-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-548AH-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AM-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AQ-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-10523-5P | 99.91 | 69.22 | 2038 |
| HSA-MIR-5680 | 99.91 | 69.83 | 3421 |
| HSA-MIR-10527-5P | 99.91 | 72.28 | 3754 |
| HSA-MIR-7162-3P | 99.89 | 68.16 | 1682 |
| HSA-MIR-6780A-5P | 99.88 | 66.69 | 2776 |
| HSA-MIR-5582-3P | 99.86 | 72.48 | 4221 |
| HSA-MIR-4503 | 99.85 | 71.45 | 1869 |
| HSA-MIR-576-5P | 99.84 | 70.46 | 2582 |
| HSA-MIR-548AZ-5P | 99.83 | 69.94 | 3230 |
| HSA-MIR-548T-5P | 99.83 | 69.91 | 3220 |
| HSA-MIR-4495 | 99.82 | 72.08 | 3080 |
| HSA-MIR-8080 | 99.82 | 67.52 | 1342 |
| HSA-MIR-1273H-5P | 99.77 | 66.32 | 2471 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- Copper specifically regulates intracellular phosphorylation of the Wilson’s disease protein, a human copper-transporting ATPase. (PMID:11470780)
- Missense mutation, Arg779Leu, was identified in 14 WD patients, and the frequency of this mutation in Chinese patients was 30%. (PMID:11775546)
- ATP7B expression is upregulated in breast carcinoma (PMID:11802810)
- Zinc binding to the NH2-terminal domain of the Wilson disease copper-transporting ATPase: implications for in vivo metal ion-mediated regulation of ATPase activity. (PMID:11823463)
- frequency of common Wilson diease gene mutations in Hungarian patients (PMID:11857545)
- Metallochaperone Atox1 transfers copper to the NH2-terminal domain and regulates its catalytic activity (PMID:12029094)
- The form of this protein expressed in Sf9 cells is phosphorylated (PMID:12196182)
- the role of ATP7B gene in ovarian carcinoma and its expression compared with those of multidrug resistance-related transporters such as MDR1, MRP1, MRP2, LRP and BCRP genes (PMID:12216079)
- DNA mutations residing in the consensus sequence of WND gene splice sites result in the Wilson disease phenotype by interfering with the production of the normal WND protein. (PMID:12325021)
- This study describes the first report that a copper-transporting P-type adenosine triphosphatase, ATP7B, is expressed in human gastric carcinomas (PMID:12445675)
- mutated in Wilson disease. (PMID:12539960)
- molecular architecture and major biochemical properties (review) (PMID:12539962)
- R778L, N1270S, and A874V mutations are three major mutations representing approximately 60% of mutated alleles (PMID:12544487)
- Histidine-1069 in an invariant site on this protein and affects its folding and function. (PMID:12551905)
- Defective cellular localization of mutant ATP7B in Wilson’s disease and hepatoma cell lines. H1069Q-ATP7B was trapped in endoplasmic reticulum. Truncated ATP7B mutants showed a diffuse, clustered, cytoplasmic pattern. (PMID:12557139)
- ATP7B is localized in the late endosomes in a polarized hepatocyte cell line. (PMID:12579329)
- Expression of ATP7B was determined in esophageal carcinoma. (PMID:12579336)
- The functional properties of this enzyme in Wilson’s disease are examined with regard to its regulation by Atox1 protein. (PMID:12763797)
- No mutation at the six copper-binding domain and ATP-binding domain of ATP7B was observed in breast, gastric and oral squameous cell carcinomas. (PMID:12820478)
- characterized the ATP7B molecular defect in 80% of Wilson disease chromosomes and found 11 different mutations (PMID:12885331)
- ATP7B is a copper-transporting P-type ATPase defective in the copper transport disorder, Wilson disease (WND). (PMID:14616767)
- handling of copper by Atox1 and copper transfer between Atox1 and WND are under kinetic rather than thermodynamic control (PMID:14709553)
- 1384del17bp is a novel mutation found in WD patients, R778L is the most common mutation of ATP7B gene, and there is a correlation between R778L and hepatic manifestations in WD patient. (PMID:14966923)
- ATP7B has a role in chemoresistance for cisplatin-based chemotherapy in patients with ovarian carcinoma (PMID:15102688)
- copper transporting ATPase Wilson (ATP7B)is present in the syncytiotrophoblast of the human placenta (PMID:15135234)
- Overexpression of ATP7B in hepatocellular carcinoma might be associated with unfavorable clinical outcome in patients treated with cisplatin-based chemotherapy. (PMID:15154620)
- analysis of amino acid pairs sensitive to variants in human copper-transporting ATPase 2 (PMID:15158437)
- analysis of the Wilson disease mutations in the nucleotide-binding domain of ATP7B, the human copper-transporting ATPase (PMID:15205462)
- the result of this study completed sequence DNA analysis linked to the gene ATP-7B from patient wd-1 revealed a novel A to C transversion in exon 17 at position 3856 (A3856C) of the mRNA resulting in a threonine for proline substitution at position 1232. (PMID:15337266)
- Hepatic abnormalities in Long-Evans Cinnamon rats, an animal model of Wilson disease, were restored by the expression of the human ATP7B cDNA under the control of CAG promoter (PMID:15511628)
- the H1069Q mutation is associated with a late and neurologic presentation. (PMID:15519648)
- a novel T766R mutation (PMID:15557537)
- ATP7B resides in the late endosomes with Rab7 and the Niemann-Pick C1 protein and translocates copper from the cytosol to the late endosomal lumen, participating in biliary copper excretion via lysosomes (PMID:15681833)
- The functional study of the Wilson ATPase in a purified, reconstituted system was carried out. (PMID:15963506)
- analysis of novel ATP7B mutations resulting in copper storage in liver and brain in Wilson disease (PMID:16088907)
- Results suggest that WD pathogenesis relates little to the mutations of the promoter region in ATP7B gene in Chinese. (PMID:16215951)
- Wilson disease results from mutations of the ATP7B gene on chromosome 13. (PMID:16230279)
- Frameshift and nonsense mutations in the gene for ATPase7B are associated with severe impairment of copper metabolism and with an early clinical manifestation of Wilson’s disease. (PMID:16283883)
- The ATP7B is localized to the plasma membrane of both hepatocytes and biliary epithelial cells. (PMID:16377579)
- analysis of the Wilson disease mutations in the nucleotide-binding domain of ATP7B, the human copper-transporting ATPase (PMID:16416207)
Cross-species orthologs
7 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | atp7b | ENSDARG00000058145 |
| mus_musculus | Atp7b | ENSMUSG00000006567 |
| rattus_norvegicus | Atp7b | ENSRNOG00000012878 |
| drosophila_melanogaster | ATP7 | FBGN0030343 |
| caenorhabditis_elegans | WBGENE00000834 | |
| caenorhabditis_elegans | WBGENE00015338 | |
| caenorhabditis_elegans | WBGENE00015660 |
Paralogs (21): ATP2C1 (ENSG00000017260), ATP1A2 (ENSG00000018625), ATP2B4 (ENSG00000058668), ATP2C2 (ENSG00000064270), ATP2B3 (ENSG00000067842), ATP2B1 (ENSG00000070961), ATP2A3 (ENSG00000074370), ATP12A (ENSG00000075673), ATP1A3 (ENSG00000105409), ATP4A (ENSG00000105675), ATP13A1 (ENSG00000105726), ATP13A4 (ENSG00000127249), ATP1A4 (ENSG00000132681), ATP13A3 (ENSG00000133657), ATP2B2 (ENSG00000157087), ATP13A2 (ENSG00000159363), ATP1A1 (ENSG00000163399), ATP7A (ENSG00000165240), ATP2A2 (ENSG00000174437), ATP13A5 (ENSG00000187527), ATP2A1 (ENSG00000196296)
Protein
Protein identifiers
Copper-transporting ATPase 2 — P35670 (reviewed: P35670)
Alternative names: Copper pump 2, Wilson disease-associated protein
All UniProt accessions (12): A0A0U1RQY8, A0A0U1RRG1, A0A669KA36, A0A669KB21, A0A669KB88, A0AAQ5BGL6, A0AAQ5BGP2, B7ZLR4, P35670, E7ET55, F5H562, F5H748
UniProt curated annotations — full annotation on UniProt →
Function. Copper ion transmembrane transporter involved in the export of copper out of the cells. It is involved in copper homeostasis in the liver, where it ensures the efflux of copper from hepatocytes into the bile in response to copper overload.
Subunit / interactions. Monomer. Interacts with COMMD1/MURR1. Interacts with DCTN4, in a copper-dependent manner. Interacts with ATOX1. Interacts (via C-terminus) with ZBTB16/PLZF.
Subcellular location. Golgi apparatus. trans-Golgi network membrane. Late endosome Golgi apparatus membrane Cytoplasm Mitochondrion.
Tissue specificity. Most abundant in liver and kidney and also found in brain. Isoform 2 is expressed in brain but not in liver. The cleaved form WND/140 kDa is found in liver cell lines and other tissues.
Post-translational modifications. Isoform 1 may be proteolytically cleaved at the N-terminus to produce the WND/140 kDa form.
Disease relevance. Wilson disease (WD) [MIM:277900] An autosomal recessive disorder of copper metabolism in which copper cannot be incorporated into ceruloplasmin in liver, and cannot be excreted from the liver into the bile. Copper accumulates in the liver and subsequently in the brain and kidney. The disease is characterized by neurologic manifestations and signs of cirrhosis. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. Each HMA domain can bind a copper ion, they are tightly packed and closely interact with each other. Wild-type ATP7B can usually be loaded with an average 5.5 copper atoms per molecule.
Miscellaneous. May arise by a -1 programmed ribosomal frameshift at codon 233. A nucleotide ‘slippery sequence’ followed by an mRNA pseudoknot are found downstream of the frameshift site and direct frameshifting of a gene fragment with about 10% efficiency.
Similarity. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily.
Isoforms (5)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P35670-1 | 1, A | yes |
| P35670-2 | 2, B | |
| P35670-3 | 3 | |
| P35670-4 | 4 | |
| P35670-5 | 5 |
RefSeq proteins (41): NP_000044, NP_001005918, NP_001230111, NP_001317507, NP_001317508, NP_001393440, NP_001393441, NP_001393442, NP_001393443, NP_001393444, NP_001393445, NP_001393446, NP_001393447, NP_001393448, NP_001393449, NP_001393450, NP_001393451, NP_001393452, NP_001393453, NP_001393454, NP_001393455, NP_001393456, NP_001393457, NP_001393459, NP_001393460, NP_001393461, NP_001393463, NP_001393464, NP_001393465, NP_001393466, NP_001393467, NP_001393468, NP_001393469, NP_001393470, NP_001393471, NP_001393472, NP_001393473, NP_001393474, NP_001393475, NP_001393476, NP_001393477 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001757 | P_typ_ATPase | Family |
| IPR006121 | HMA_dom | Domain |
| IPR006122 | HMA_Cu_ion-bd | Domain |
| IPR008250 | ATPase_P-typ_transduc_dom_A_sf | Homologous_superfamily |
| IPR017969 | Heavy-metal-associated_CS | Conserved_site |
| IPR018303 | ATPase_P-typ_P_site | PTM |
| IPR023214 | HAD_sf | Homologous_superfamily |
| IPR023298 | ATPase_P-typ_TM_dom_sf | Homologous_superfamily |
| IPR023299 | ATPase_P-typ_cyto_dom_N | Homologous_superfamily |
| IPR027256 | P-typ_ATPase_IB | Family |
| IPR036163 | HMA_dom_sf | Homologous_superfamily |
| IPR036412 | HAD-like_sf | Homologous_superfamily |
| IPR044492 | P_typ_ATPase_HD_dom | Domain |
| IPR059000 | ATPase_P-type_domA | Domain |
Pfam: PF00122, PF00403, PF00702
Enzyme classification (BRENDA):
- EC 7.2.2.8 — P-type Cu+ transporter (BRENDA: 25 organisms, 32 substrates, 20 inhibitors, 14 Km, 4 kcat entries)
- EC 7.2.2.9 — P-type Cu2+ transporter (BRENDA: 24 organisms, 135 substrates, 11 inhibitors, 11 Km, 0 kcat entries)
Substrate kinetics (BRENDA)
5 substrates with measured Km, best-characterized 5. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| ATP | 0.0009–2.02 | 10 |
| ATP | 0.11–0.5 | 5 |
| CU+[SIDE 1] | 0.0019–0.19 | 3 |
| CU+ | 0.0004–0.0015 | 2 |
| 4-NITROPHENYL PHOSPHATE | 9 | 1 |
Catalyzed reactions (Rhea), 1 shown:
- Cu(+)(in) + ATP + H2O = Cu(+)(out) + ADP + phosphate + H(+) (RHEA:25792)
UniProt features (499 total): sequence variant 300, strand 54, helix 51, turn 23, mutagenesis site 16, binding site 14, topological domain 9, transmembrane region 8, domain 6, splice variant 5, sequence conflict 4, modified residue 4, chain 2, region of interest 2, active site 1
Structure
Experimental structures (PDB)
13 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6A71 | X-RAY DIFFRACTION | 1.6 |
| 6A72 | X-RAY DIFFRACTION | 2.1 |
| 7XUK | ELECTRON MICROSCOPY | 3.3 |
| 7XUN | ELECTRON MICROSCOPY | 3.4 |
| 7XUO | ELECTRON MICROSCOPY | 3.6 |
| 7XUM | ELECTRON MICROSCOPY | 3.8 |
| 8IOY | ELECTRON MICROSCOPY | 4 |
| 2ARF | SOLUTION NMR | |
| 2EW9 | SOLUTION NMR | |
| 2KOY | SOLUTION NMR | |
| 2LQB | SOLUTION NMR | |
| 2N7Y | SOLUTION NMR | |
| 2ROP | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P35670-F1 | 71.83 | 0.11 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 1027 (4-aspartylphosphate intermediate)
Ligand- & substrate-binding residues (14): 69; 72; 154; 157; 268; 271; 370; 373; 499; 502; 575; 578 …
Post-translational modifications (4): 23, 478, 481, 1398
Mutagenesis-validated functional residues (16):
| Position | Phenotype |
|---|---|
| 32 | does not affect copper-induced relocalization. |
| 37 | altered copper-induced relocalization. |
| 39 | altered copper-induced relocalization. |
| 39 | does not affect copper-induced relocalization. |
| 40 | altered copper-induced relocalization. |
| 41 | altered copper-induced relocalization. |
| 42 | altered copper-induced relocalization. |
| 42 | does not affect copper-induced relocalization. |
| 43 | altered copper-induced relocalization. |
| 44 | does not affect copper-induced relocalization. |
| 44 | altered copper-induced relocalization. |
| 45 | altered copper-induced relocalization. |
| 653 | altered copper-induced relocalization. |
| 1027 | loss of copper transport activity. |
| 1031 | decreased copper transport activity with no effect on atpase activity. |
| 1069 | loss of atpase activity. cannot form an acylphosphate intermediate during catalysis. does not alter folding of the nucle |
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-936837 | Ion transport by P-type ATPases |
| R-HSA-382551 | Transport of small molecules |
| R-HSA-983712 | Ion channel transport |
MSigDB gene sets: 379 (showing top):
GOBP_TRANSITION_METAL_ION_TRANSPORT, MODULE_64, BROWNE_HCMV_INFECTION_16HR_UP, LUCAS_HNF4A_TARGETS_UP, GOBP_RESPONSE_TO_COPPER_ION, GOBP_COPPER_ION_TRANSPORT, GOBP_MONOATOMIC_CATION_TRANSPORT, GOBP_RESPONSE_TO_METAL_ION, GOBP_PROTEIN_MATURATION, GOCC_TRANS_GOLGI_NETWORK, GOBP_MAINTENANCE_OF_LOCATION, GOBP_DETOXIFICATION, GOBP_SECRETION, GOBP_MAMMARY_GLAND_DEVELOPMENT, GOBP_MONOATOMIC_ION_HOMEOSTASIS
GO Biological Process (17): copper ion transport (GO:0006825), intracellular copper ion homeostasis (GO:0006878), intracellular zinc ion homeostasis (GO:0006882), lactation (GO:0007595), copper ion import (GO:0015677), monoatomic ion transmembrane transport (GO:0034220), response to copper ion (GO:0046688), obsolete sequestering of calcium ion (GO:0051208), protein maturation (GO:0051604), establishment of localization in cell (GO:0051649), copper ion export (GO:0060003), viral translational frameshifting (GO:0075523), xenobiotic detoxification by transmembrane export across the plasma membrane (GO:1990961), monoatomic ion transport (GO:0006811), monoatomic cation transport (GO:0006812), copper ion transmembrane transport (GO:0035434), monoatomic cation transmembrane transport (GO:0098655)
GO Molecular Function (11): copper ion transmembrane transporter activity (GO:0005375), copper ion binding (GO:0005507), ATP binding (GO:0005524), ATP hydrolysis activity (GO:0016887), P-type divalent copper transporter activity (GO:0043682), P-type monovalent copper transporter activity (GO:0140581), nucleotide binding (GO:0000166), transporter activity (GO:0005215), protein binding (GO:0005515), ATPase-coupled monoatomic cation transmembrane transporter activity (GO:0019829), metal ion binding (GO:0046872)
GO Cellular Component (14): Golgi membrane (GO:0000139), mitochondrion (GO:0005739), late endosome (GO:0005770), Golgi apparatus (GO:0005794), plasma membrane (GO:0005886), membrane (GO:0016020), trans-Golgi network membrane (GO:0032588), cytoplasm (GO:0005737), endosome (GO:0005768), trans-Golgi network (GO:0005802), endomembrane system (GO:0012505), basolateral plasma membrane (GO:0016323), cytoplasmic vesicle (GO:0031410), perinuclear region of cytoplasm (GO:0048471)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Ion channel transport | 1 |
| Transport of small molecules | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cytoplasm | 4 |
| cellular anatomical structure | 4 |
| intracellular monoatomic cation homeostasis | 2 |
| copper ion transport | 2 |
| monoatomic ion transport | 2 |
| copper ion transmembrane transport | 2 |
| copper ion transmembrane transporter activity | 2 |
| P-type ion transporter activity | 2 |
| ATPase-coupled monoatomic cation transmembrane transporter activity | 2 |
| intracellular membrane-bounded organelle | 2 |
| endomembrane system | 2 |
| transition metal ion transport | 1 |
| copper ion homeostasis | 1 |
| inorganic ion homeostasis | 1 |
| body fluid secretion | 1 |
| mammary gland development | 1 |
| milk ejection reflex | 1 |
| transmembrane transport | 1 |
| response to metal ion | 1 |
| gene expression | 1 |
| protein metabolic process | 1 |
| establishment of localization | 1 |
| cellular localization | 1 |
| viral process | 1 |
| viral translation | 1 |
| xenobiotic export from cell | 1 |
| detoxification | 1 |
| export across plasma membrane | 1 |
| transport | 1 |
| monoatomic cation transmembrane transport | 1 |
| monoatomic cation transport | 1 |
| monoatomic ion transmembrane transport | 1 |
| transition metal ion transmembrane transporter activity | 1 |
| transition metal ion binding | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| ribonucleoside triphosphate phosphatase activity | 1 |
| ATP-dependent activity | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
Protein interactions and networks
STRING
2396 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ATP7B | ATOX1 | O00244 | 981 |
| ATP7B | CP | P00450 | 968 |
| ATP7B | COMMD1 | Q8N668 | 945 |
| ATP7B | SLC31A1 | O15431 | 938 |
| ATP7B | SLC31A2 | O15432 | 926 |
| ATP7B | H3BSS0 | H3BSS0 | 824 |
| ATP7B | GLRX | P35754 | 784 |
| ATP7B | ATP13A3 | Q9H7F0 | 779 |
| ATP7B | COX17 | Q14061 | 773 |
| ATP7B | SLC30A4 | O14863 | 736 |
| ATP7B | ATP4B | P51164 | 731 |
| ATP7B | MT1A | P04731 | 699 |
| ATP7B | CCS | O14618 | 690 |
| ATP7B | PCDH9 | Q9HC56 | 654 |
| ATP7B | MT2A | P02795 | 604 |
IntAct
46 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| COMMD1 | ATP7B | psi-mi:“MI:0915”(physical association) | 0.740 |
| ATP7B | COMMD1 | psi-mi:“MI:0915”(physical association) | 0.740 |
| COMMD1 | ATP7B | psi-mi:“MI:0407”(direct interaction) | 0.740 |
| COMMD1 | ATP7B | psi-mi:“MI:0403”(colocalization) | 0.740 |
| NIPAL1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.640 |
| ATOX1 | ATP7B | psi-mi:“MI:0915”(physical association) | 0.540 |
| ATOX1 | ATP7B | psi-mi:“MI:0407”(direct interaction) | 0.540 |
| MANSC1 | KLRG2 | psi-mi:“MI:0914”(association) | 0.530 |
| PCDHGB1 | FAM171A2 | psi-mi:“MI:0914”(association) | 0.530 |
| ITM2A | NDUFB5 | psi-mi:“MI:0914”(association) | 0.530 |
| DENND11 | psi-mi:“MI:0914”(association) | 0.350 | |
| M | TM9SF1 | psi-mi:“MI:0914”(association) | 0.350 |
| Npc1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| ATG16L1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| TTYH1 | TMEM223 | psi-mi:“MI:0914”(association) | 0.350 |
| CLEC2D | TMEM120B | psi-mi:“MI:0914”(association) | 0.350 |
| C5AR1 | TCAF2 | psi-mi:“MI:0914”(association) | 0.350 |
| CX3CL1 | FAM171A2 | psi-mi:“MI:0914”(association) | 0.350 |
| KCNMB3 | UPK3BL1 | psi-mi:“MI:0914”(association) | 0.350 |
| GRPR | GPR89A | psi-mi:“MI:0914”(association) | 0.350 |
| TMEM223 | TNFRSF10B | psi-mi:“MI:0914”(association) | 0.350 |
| NRG1 | CHST10 | psi-mi:“MI:0914”(association) | 0.350 |
| FCER1A | STX6 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (94): ATP7B (Affinity Capture-MS), ATP7B (Affinity Capture-MS), GLRX (Two-hybrid), ATP7B (Affinity Capture-Western), ATP7B (Affinity Capture-MS), ATP7B (Affinity Capture-MS), ATP7B (Affinity Capture-MS), ATP7B (Affinity Capture-MS), ATP7B (Affinity Capture-MS), ATP7B (Affinity Capture-MS), ATP7B (Affinity Capture-MS), ATP7B (Affinity Capture-MS), ATP7B (Proximity Label-MS), ATP7B (Affinity Capture-RNA), ATP7B (Affinity Capture-MS)
ESM2 similar proteins: A0A0P0X004, A1A4L5, A3AWA4, D3ZVK1, E1BPX4, I0IUP3, O81108, P32232, P35670, P49015, P70705, Q04656, Q07G10, Q0V9N0, Q0V9Q6, Q13057, Q2QMX9, Q37145, Q4VNC1, Q58H57, Q5F310, Q5XF90, Q64430, Q64446, Q64535, Q6GNY1, Q6H7M3, Q6PCN7, Q7X8B5, Q804S5, Q80SY4, Q80Y20, Q86YT6, Q8CGS6, Q8L5Z4, Q91WT9, Q95216, Q95K79, Q96BT7, Q9CWV1
Diamond homologs: A0A0P0X004, A0R3A7, A3AWA4, A5IVY3, A6QK47, A6U4T8, A7X6S1, A8YZ02, A8Z3F8, B2HEM2, B9DFX7, O08462, O29777, O30085, O31688, O32219, O32220, O32619, O33533, O59666, P05425, P07893, P0A503, P18398, P20021, P30336, P32113, P35670, P37279, P37385, P37617, P38360, P38995, P46839, P46840, P49015, P55989, P58341, P58342, P58414
SIGNOR signaling
5 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PRKD1 | “up-regulates activity” | ATP7B | phosphorylation |
| ATP7B | “up-regulates quantity” | copper(1+) | relocalization |
Disease & clinical
Cancer significance
Clinical variants and AI predictions
ClinVar
3682 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 326 |
| Likely pathogenic | 313 |
| Uncertain significance | 1258 |
| Likely benign | 1140 |
| Benign | 66 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1068802 | NM_000053.4(ATP7B):c.3071_3072del (p.Val1024fs) | Pathogenic |
| 1069463 | NM_000053.4(ATP7B):c.2589del (p.Val864fs) | Pathogenic |
| 1069714 | NM_000053.4(ATP7B):c.2510del (p.Gly837fs) | Pathogenic |
| 1069715 | NM_000053.4(ATP7B):c.1746dup (p.Glu583fs) | Pathogenic |
| 1069716 | NM_000053.4(ATP7B):c.2447+5G>A | Pathogenic |
| 1069926 | NM_000053.4(ATP7B):c.3206A>G (p.His1069Arg) | Pathogenic |
| 1071568 | NM_000053.4(ATP7B):c.4374_4375del (p.Arg1459fs) | Pathogenic |
| 1072000 | NM_000053.4(ATP7B):c.1186G>T (p.Glu396Ter) | Pathogenic |
| 1072277 | NM_000053.4(ATP7B):c.2866-2A>C | Pathogenic |
| 1073155 | NM_000053.4(ATP7B):c.465_466insCCTGTGCA (p.Ser156fs) | Pathogenic |
| 1073713 | NM_000053.4(ATP7B):c.1107_1108dup (p.Cys370fs) | Pathogenic |
| 1073826 | NC_000013.10:g.(?_52548990)_52552030del | Pathogenic |
| 1073995 | NM_000053.4(ATP7B):c.92dup (p.Ala32fs) | Pathogenic |
| 1075643 | NM_000053.4(ATP7B):c.3140del (p.Asp1047fs) | Pathogenic |
| 1162212 | NM_000053.4(ATP7B):c.1705_1707+10del | Pathogenic |
| 1162218 | NM_000053.4(ATP7B):c.122del (p.Asn41fs) | Pathogenic |
| 1162219 | NM_000053.4(ATP7B):c.379del (p.Glu127fs) | Pathogenic |
| 1162220 | NM_000053.4(ATP7B):c.560_561del (p.Tyr187fs) | Pathogenic |
| 1162221 | NM_000053.4(ATP7B):c.1136del (p.Gly379fs) | Pathogenic |
| 1162222 | NM_000053.4(ATP7B):c.1286-2A>G | Pathogenic |
| 1162223 | NM_000053.4(ATP7B):c.1369C>T (p.Gln457Ter) | Pathogenic |
| 1162226 | NM_000053.4(ATP7B):c.2637_2650del (p.His880_Gly881insTer) | Pathogenic |
| 1162231 | NM_000053.4(ATP7B):c.3845dup (p.Ala1283fs) | Pathogenic |
| 1162232 | NM_000053.4(ATP7B):c.1242_1243del (p.Arg414fs) | Pathogenic |
| 1163360 | NM_000053.4(ATP7B):c.1677C>A (p.Tyr559Ter) | Pathogenic |
| 1163545 | NM_000053.4(ATP7B):c.3083_3085delinsC (p.Lys1028fs) | Pathogenic |
| 1179167 | GRCh37/hg19 13q14.3(chr13:52548050-52549324) | Pathogenic |
| 1299711 | NM_000053.4(ATP7B):c.52dup (p.Ile18fs) | Pathogenic |
| 1323908 | NM_000053.4(ATP7B):c.3334_3335del (p.Ile1112fs) | Pathogenic |
| 1323954 | NM_000053.4(ATP7B):c.3805dup (p.Val1269fs) | Pathogenic |
SpliceAI
4106 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 13:51935592:CCA:C | donor_gain | 1.0000 |
| 13:51937270:GCCTA:G | donor_loss | 1.0000 |
| 13:51937271:CCTA:C | donor_loss | 1.0000 |
| 13:51937272:CTACC:C | donor_loss | 1.0000 |
| 13:51937273:TACC:T | donor_loss | 1.0000 |
| 13:51937274:ACC:A | donor_loss | 1.0000 |
| 13:51937275:C:G | donor_loss | 1.0000 |
| 13:51937275:CCTG:C | donor_gain | 1.0000 |
| 13:51937394:C:CC | acceptor_gain | 1.0000 |
| 13:51937474:A:AC | donor_gain | 1.0000 |
| 13:51937475:C:CT | donor_gain | 1.0000 |
| 13:51937475:CT:C | donor_gain | 1.0000 |
| 13:51937601:T:TA | donor_gain | 1.0000 |
| 13:51937602:C:A | donor_gain | 1.0000 |
| 13:51937675:CCAAC:C | acceptor_gain | 1.0000 |
| 13:51937676:CAAC:C | acceptor_gain | 1.0000 |
| 13:51937676:CAACC:C | acceptor_gain | 1.0000 |
| 13:51939045:CTGTA:C | donor_loss | 1.0000 |
| 13:51939046:TGTAC:T | donor_loss | 1.0000 |
| 13:51939047:GTAC:G | donor_loss | 1.0000 |
| 13:51939048:TAC:T | donor_loss | 1.0000 |
| 13:51939049:ACCT:A | donor_loss | 1.0000 |
| 13:51939194:CT:C | acceptor_loss | 1.0000 |
| 13:51939195:T:G | acceptor_loss | 1.0000 |
| 13:51942450:A:AC | donor_gain | 1.0000 |
| 13:51942451:C:CC | donor_gain | 1.0000 |
| 13:51942553:TC:T | acceptor_gain | 1.0000 |
| 13:51942554:CC:C | acceptor_gain | 1.0000 |
| 13:51942563:G:C | acceptor_gain | 1.0000 |
| 13:51942563:G:GC | acceptor_gain | 1.0000 |
AlphaMissense
9621 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 13:51935644:G:T | A1358D | 0.999 |
| 13:51937279:C:G | A1340P | 0.999 |
| 13:51937301:G:C | N1332K | 0.999 |
| 13:51937301:G:T | N1332K | 0.999 |
| 13:51937566:G:C | D1271E | 0.999 |
| 13:51937566:G:T | D1271E | 0.999 |
| 13:51937567:T:A | D1271V | 0.999 |
| 13:51937567:T:G | D1271A | 0.999 |
| 13:51937568:C:G | D1271H | 0.999 |
| 13:51937583:C:A | G1266W | 0.999 |
| 13:51939058:G:T | A1231D | 0.999 |
| 13:51946360:A:T | V995D | 0.999 |
| 13:51946363:G:T | A994D | 0.999 |
| 13:51946375:G:T | A990D | 0.999 |
| 13:51946378:A:G | L989P | 0.999 |
| 13:51946396:C:T | C983Y | 0.999 |
| 13:51946397:A:G | C983R | 0.999 |
| 13:51946399:G:T | A982D | 0.999 |
| 13:51950021:C:G | A906P | 0.999 |
| 13:51950113:C:T | G875E | 0.999 |
| 13:51957556:C:G | A803P | 0.999 |
| 13:51957570:A:G | L798P | 0.999 |
| 13:51957579:A:G | L795P | 0.999 |
| 13:51958333:C:G | R778P | 0.999 |
| 13:51958337:C:G | G777R | 0.999 |
| 13:51958357:A:T | L770H | 0.999 |
| 13:51958471:A:T | L732H | 0.999 |
| 13:51935636:C:G | A1361P | 0.998 |
| 13:51935639:C:G | A1360P | 0.998 |
| 13:51935640:C:A | M1359I | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000013230 (13:51991421 G>T), RS1000017968 (13:51955544 G>A), RS1000031518 (13:51949559 T>C), RS1000076187 (13:51949571 G>A), RS1000088261 (13:51992728 A>G), RS1000238450 (13:52003307 T>G), RS1000284005 (13:51934038 A>T), RS1000320202 (13:51955358 G>A,T), RS1000471385 (13:51955390 C>A,T), RS1000495665 (13:51990941 A>T), RS1000542667 (13:51986002 A>T), RS1000561251 (13:51992218 C>T), RS1000564139 (13:51968243 GACTGTTTA>G), RS1000565729 (13:51933222 A>C,G), RS1000575169 (13:51985741 T>C)
Disease associations
OMIM: gene MIM:606882 | disease phenotypes: MIM:277900, MIM:620442, MIM:277990, MIM:108600, MIM:614081, MIM:618013, MIM:618012, MIM:613661
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Wilson disease | Definitive | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| Wilson disease | Definitive | AR |
Mondo (8): Wilson disease (MONDO:0010200), breast-ovarian cancer, familial, susceptibility to, 5 (MONDO:0957530), intellectual disability, Wolff type (MONDO:0010203), spastic ataxia (MONDO:0017845), anhaptoglobinemia (MONDO:0013564), hearing loss, autosomal recessive 109 (MONDO:0033202), developmental and epileptic encephalopathy 93 (MONDO:0020632), ALG11-congenital disorder of glycosylation (MONDO:0013349)
Orphanet (4): Wilson disease (Orphanet:905), Intellectual disability, Wolff type (Orphanet:3080), Spastic ataxia (Orphanet:316226), ALG11-CDG (Orphanet:280071)
HPO phenotypes
106 total (30 of 106 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000093 | Proteinuria |
| HP:0000124 | Renal tubular dysfunction |
| HP:0000140 | Abnormality of the menstrual cycle |
| HP:0000709 | Psychosis |
| HP:0000716 | Depression |
| HP:0000718 | Aggressive behavior |
| HP:0000726 | Dementia |
| HP:0000738 | Hallucinations |
| HP:0000739 | Anxiety |
| HP:0000751 | Personality changes |
| HP:0000762 | Decreased nerve conduction velocity |
| HP:0000787 | Nephrolithiasis |
| HP:0000789 | Infertility |
| HP:0000829 | Hypoparathyroidism |
| HP:0000934 | Chondrocalcinosis |
| HP:0000939 | Osteoporosis |
| HP:0000952 | Jaundice |
| HP:0000969 | Edema |
| HP:0000978 | Bruising susceptibility |
| HP:0000989 | Pruritus |
| HP:0001155 | Abnormality of the hand |
| HP:0001249 | Intellectual disability |
| HP:0001250 | Seizure |
| HP:0001259 | Coma |
| HP:0001260 | Dysarthria |
| HP:0001271 | Polyneuropathy |
| HP:0001288 | Gait disturbance |
| HP:0001332 | Dystonia |
| HP:0001337 | Tremor |
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST005686_4 | Clostridium difficile infection in multiple myeloma | 4.000000e-08 |
| GCST008161_79 | Waist circumference adjusted for body mass index | 2.000000e-06 |
| GCST90002397_61 | Mean spheric corpuscular volume | 6.000000e-12 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0009130 | clostridium difficile infection |
| EFO:0007789 | BMI-adjusted waist circumference |
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D006527 | Hepatolenticular Degeneration | C06.552.413; C10.228.140.079.493; C10.228.140.163.100.360; C10.228.662.400; C10.574.500.487; C16.320.400.361; C16.320.565.189.360; C16.320.565.618.403; C18.452.132.100.360; C18.452.648.189.360; C18.452.648.618.403 |
| C537448 | Mental retardation Wolff type (supp.) | |
| C564815 | Spastic Ataxia (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
4 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs1061472 | Toxicity | 3 | carboplatin;taxanes | Ovarian Neoplasms |
| rs1801249 | Toxicity | 3 | carboplatin;taxanes | Ovarian Neoplasms |
| rs9535826 | Efficacy | 3 | Platinum compounds | Lung Neoplasms |
| rs9535828 | Efficacy | 3 | Platinum compounds | Lung Neoplasms |
PharmGKB variants
5 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs1061472 | ATP7B | 3 | 3.00 | 1 | carboplatin;taxanes |
| rs1801249 | ATP7B | 3 | 3.00 | 1 | carboplatin;taxanes |
| rs7999812 | ATP7B | 0.00 | 0 | ||
| rs9535826 | ATP7B | 3 | 2.50 | 1 | Platinum compounds |
| rs9535828 | ATP7B | 3 | 2.00 | 1 | Platinum compounds |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: transporter — P1B P-type ATPases: Cu+-ATPases
CTD chemical–gene interactions
77 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Copper | increases expression, decreases abundance, increases uptake, decreases phosphorylation, increases stability (+16 more) | 26 |
| Cisplatin | increases metabolic processing, increases secretion, decreases expression, affects response to substance, affects binding (+4 more) | 6 |
| cupric chloride | decreases response to substance, increases abundance, increases uptake, affects localization, affects binding (+1 more) | 5 |
| Benzo(a)pyrene | affects methylation, decreases expression, increases methylation | 3 |
| Copper Sulfate | decreases response to substance, decreases expression, increases expression | 3 |
| sodium arsenite | affects cotreatment, increases abundance, increases expression, affects methylation | 2 |
| cupric oxide | affects localization, increases expression | 2 |
| Adenosine Triphosphate | increases phosphorylation, affects cotreatment | 2 |
| Hydrogen Peroxide | affects expression, affects binding, increases reaction | 2 |
| Penicillamine | decreases reaction, decreases expression, affects cotreatment, decreases activity, affects binding (+2 more) | 2 |
| Phenylmercuric Acetate | increases expression, affects cotreatment | 2 |
| Tobacco Smoke Pollution | affects expression, decreases expression | 2 |
| Valproic Acid | decreases methylation, increases expression | 2 |
| Cyclosporine | decreases expression | 2 |
| Aflatoxin B1 | affects expression, decreases methylation | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| bufotalin | decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| bisphenol A | increases methylation | 1 |
| zinc chloride | decreases expression, increases expression | 1 |
| tetrathiomolybdate | decreases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| protoporphyrin IX | decreases abundance, increases reaction, decreases chemical synthesis | 1 |
| bathocuproine sulfonate | affects cotreatment, increases reaction, affects binding | 1 |
| aflatoxin B2 | increases methylation | 1 |
| epigallocatechin gallate | decreases expression, affects cotreatment | 1 |
| bicinchoninic acid | decreases phosphorylation, decreases reaction | 1 |
| benzyloxycarbonylleucyl-leucyl-leucine aldehyde | decreases degradation | 1 |
Cellosaurus cell lines
21 cell lines: 13 induced pluripotent stem cell, 3 finite cell line, 3 transformed cell line, 2 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_0P48 | GM05257 | Finite cell line | Female |
| CVCL_0P49 | GM05258 | Transformed cell line | Female |
| CVCL_0P50 | GM05259 | Finite cell line | Female |
| CVCL_0P51 | GM05260 | Transformed cell line | Female |
| CVCL_0P61 | GM05761 | Transformed cell line | Female |
| CVCL_0P62 | GM05762 | Finite cell line | Female |
| CVCL_A0VT | ICGi030-A | Induced pluripotent stem cell | Male |
| CVCL_A1VW | AKOSi008-A | Induced pluripotent stem cell | Female |
| CVCL_A1XC | THSJTUi001-A | Induced pluripotent stem cell | Male |
| CVCL_B3SJ | SMBCi013-A | Induced pluripotent stem cell | Male |
Clinical trials (associated diseases)
69 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00004338 | PHASE4 | COMPLETED | Study of Zinc for Wilson Disease |
| NCT02426905 | PHASE4 | UNKNOWN | Study to Assess Long-Term Outcomes of Trientine in Wilson Disease Patients Withdrawn From Therapy With d-Penicillamine |
| NCT05305872 | PHASE4 | UNKNOWN | Gandouling in the Treatment of Wilson’s Disease |
| NCT00004339 | PHASE3 | COMPLETED | Study of Tetrathiomolybdate in Patients With Wilson Disease |
| NCT00212355 | PHASE3 | COMPLETED | Efficacy and Safety, Long-term Study of Zinc Acetate to Treat Wilson’s Disease in Japan. |
| NCT03403205 | PHASE3 | TERMINATED | Efficacy and Safety of ALXN1840 Administered for 48 Weeks Versus Standard of Care in Participants With Wilson Disease |
| NCT03539952 | PHASE3 | COMPLETED | Trientine Tetrahydrochloride (TETA 4HCL) for the Treatment of Wilson’s Disease |
| NCT05047523 | PHASE3 | TERMINATED | Study of ALXN1840 Versus Standard of Care in Pediatric Participants With Wilson Disease |
| NCT07465718 | PHASE3 | NOT_YET_RECRUITING | Trientine Tetrahydrochloride Administered Once a Day for the First Line Treatment of Wilson’s Disease Patients. |
| NCT02273596 | PHASE2 | COMPLETED | Efficacy and Safety Study of WTX101 (ALXN1840) in Adult Wilson Disease Patients |
| NCT04422431 | PHASE2 | COMPLETED | Copper Concentration & Histopathologic Changes in Liver Biopsy in Participants With Wilson Disease Treated With ALXN1840 |
| NCT04573309 | PHASE2 | COMPLETED | Copper and Molybdenum Balance in Participants With Wilson Disease Treated With ALXN1840 |
| NCT07010575 | PHASE2 | COMPLETED | Patient Preference Study: Standard of Care Versus Once-daily Trientine Tetrahydrochloride |
| NCT01874028 | PHASE1 | COMPLETED | A Phase 1 Study to Assess the Effects in the Body of a Single Dose of Trientine Dihydrochloride in Wilson’s Disease Patients |
| NCT04526197 | PHASE1 | COMPLETED | Phase 1 Study of ALXN1840 on the Metabolism of a CYP2C9 Substrate in Healthy Participants. |
| NCT04526210 | PHASE1 | COMPLETED | Study of ALXN1840 on the Metabolism of a CYP2B6 Substrate in Healthy Participants |
| NCT05641311 | PHASE1 | COMPLETED | Pharmacokinetic Study of Oral ALXN1840 in Japanese and Non-Japanese Adult Healthy Participants |
| NCT06128954 | PHASE1 | COMPLETED | Study Comparing Once Daily Dose of 900mg of TETA 4HCL Against Cuprior® (450mg Trientine Base, Twice Daily). |
| NCT04537377 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | A Phase I/II Study of VTX-801 in Adult Patients With Wilson’s Disease |
| NCT04884815 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | A Phase 1/2/3 Study of UX701 Gene Therapy in Adults With Wilson Disease |
| NCT07173933 | PHASE1/PHASE2 | NOT_YET_RECRUITING | Phase I/II Clinical Study to Evaluate the Safety, Tolerability, and Efficacy of GC310 Injection in Patients With Wilson’s Disease (WD) |
| NCT03957720 | EARLY_PHASE1 | UNKNOWN | The Individual Therapy for Patients With Wilson’s Disease |
| NCT06650319 | EARLY_PHASE1 | RECRUITING | A Clinical Study to Evaluate the Safety and Efficacy of LY-M003 Injection in Patients With Wilson Disease |
| NCT01378182 | Not specified | COMPLETED | Efficacy of Invitro Expanded Bone Marrow Derived Allogeneic Mesenchymal Stem Cell Transplantation Via Portal Vein or Hepatic Artery or Peripheral Vein in Patients With Wilson Cirrhosis |
| NCT01472874 | Not specified | COMPLETED | Single Daily Dosage of Trientine for Maintenance Treatment for Wilson Disease |
| NCT01980433 | Not specified | COMPLETED | Inhibitory rTMS in Dystonic Wilson Patients |
| NCT02252380 | Not specified | ACTIVE_NOT_RECRUITING | ExAblate Transcranial MRgFUS for the Management of Treatment-Refractory Movement Disorders |
| NCT02552628 | Not specified | COMPLETED | WILSTIM - DBS (WILson STIMulation - Deep Brain Stimulation) |
| NCT02763215 | Not specified | COMPLETED | The Assessment of Copper Parameters in Wilson Disease Participants on Standard of Care Treatment |
| NCT03334292 | Not specified | RECRUITING | Natural History of Wilson Disease |
| NCT03589820 | Not specified | UNKNOWN | Plasma Exchange and Continuous Hemodiafiltration in Treatment of Wilson’s Disease-related Liver Failure |
| NCT03655223 | Not specified | ENROLLING_BY_INVITATION | Early Check: Expanded Screening in Newborns |
| NCT03659331 | Not specified | UNKNOWN | A Controlled Study of Potential Therapeutic Effect of Oral Zinc in Manifesting Carriers of Wilson Disease |
| NCT03867526 | Not specified | COMPLETED | Establishment of Human Cellular Disease Models for Wilson Disease |
| NCT04012658 | Not specified | RECRUITING | A Registered Cohort Study on Wilson’s Disease |
| NCT04212195 | Not specified | UNKNOWN | Cohort Research on Wilson’s Disease |
| NCT04408300 | Not specified | COMPLETED | Study of Retinal Vascular Parameters in Patients With Wilson’s Disease |
| NCT04531189 | Not specified | COMPLETED | Clinical Evaluation and Assessment of Instruments and Biomarkers in Subjects With Wilson Disease |
| NCT04909346 | Not specified | TERMINATED | Adeno-Associated Virus (AAV) Antibody Study in Subjects OTC Deficiency, GSDIa, and Wilson Disease |
| NCT04910581 | Not specified | COMPLETED | rTMS in Wilson Disease Dysarthria |
Related Atlas pages
- Associated diseases: Wilson disease
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): ALG11-congenital disorder of glycosylation, anhaptoglobinemia, breast-ovarian cancer, familial, susceptibility to, 5, developmental and epileptic encephalopathy 93, hearing loss, autosomal recessive 109, intellectual disability, Wolff type, spastic ataxia, Wilson disease