ATP8A1-DT

Summary

ATP8A1-DT (ATP8A1 divergent transcript, HGNC:55392) is a long non-coding RNA gene on chromosome 4p13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55392
Approved symbol	ATP8A1-DT
Name	ATP8A1 divergent transcript
Location	4p13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000260519
Ensembl biotype	lncRNA
Entrez	119863863
RNAcentral	URS00026A2092 — lncRNA, 825 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000562054, ENST00000792898, ENST00000792899

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000562054 — 2 exons

Exon	Start	End
ENSE00004175265	42657378	42658347
ENSE00004175266	42656320	42656463

Expression profiles

Bgee: expression breadth ubiquitous, 122 present calls, max score 96.78.

Top tissues by expression

216 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	96.78	gold quality
left testis	UBERON:0004533	77.11	gold quality
right testis	UBERON:0004534	74.77	gold quality
testis	UBERON:0000473	74.32	gold quality
cortical plate	UBERON:0005343	67.32	gold quality
buccal mucosa cell	CL:0002336	64.21	gold quality
right lobe of thyroid gland	UBERON:0001119	61.09	gold quality
left lobe of thyroid gland	UBERON:0001120	59.70	gold quality
thyroid gland	UBERON:0002046	58.90	gold quality
parotid gland	UBERON:0001831	58.62	gold quality
endothelial cell	CL:0000115	58.59	gold quality
islet of Langerhans	UBERON:0000006	58.45	gold quality
prefrontal cortex	UBERON:0000451	57.77	gold quality
monocyte	CL:0000576	57.24	gold quality
lymph node	UBERON:0000029	57.03	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	56.40	gold quality
muscle of leg	UBERON:0001383	54.90	gold quality
gastrocnemius	UBERON:0001388	53.84	gold quality
vermiform appendix	UBERON:0001154	53.35	gold quality
mammary duct	UBERON:0001765	53.15	gold quality
granulocyte	CL:0000094	52.82	gold quality
germinal epithelium of ovary	UBERON:0001304	50.98	gold quality
upper leg skin	UBERON:0004262	50.56	silver quality
Brodmann (1909) area 9	UBERON:0013540	49.77	gold quality
blood	UBERON:0000178	49.70	gold quality
smooth muscle tissue	UBERON:0001135	49.37	gold quality
pancreas	UBERON:0001264	48.36	gold quality
nasal cavity epithelium	UBERON:0005384	48.31	gold quality
calcaneal tendon	UBERON:0003701	47.97	silver quality
right lobe of liver	UBERON:0001114	47.81	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.46

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.