ATP8B1
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Also known as ATPICPFIC
Summary
ATP8B1 (ATPase phospholipid transporting 8B1, HGNC:3706) is a protein-coding gene on chromosome 18q21.31, encoding Phospholipid-transporting ATPase IC (O43520). Catalytic component of a P4-ATPase flippase complex which catalyzes the hydrolysis of ATP coupled to the transport of phospholipids, in particular phosphatidylcholines (PC), from the outer to the inner leaflet of the plasma membrane.
This gene encodes a member of the P-type cation transport ATPase family, which belongs to the subfamily of aminophospholipid-transporting ATPases. The aminophospholipid translocases transport phosphatidylserine and phosphatidylethanolamine from one side of a bilayer to another. Mutations in this gene may result in progressive familial intrahepatic cholestasis type 1 and in benign recurrent intrahepatic cholestasis.
Source: NCBI Gene 5205 — RefSeq curated summary.
At a glance
- Gene–disease (curated): progressive familial intrahepatic cholestasis type 1 (Definitive, GenCC) — +2 more curated relationships
- GWAS associations: 16
- Clinical variants (ClinVar): 1,269 total — 88 pathogenic, 54 likely-pathogenic
- Phenotypes (HPO): 57
- MANE Select transcript:
NM_001374385
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3706 |
| Approved symbol | ATP8B1 |
| Name | ATPase phospholipid transporting 8B1 |
| Location | 18q21.31 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ATPIC, PFIC |
| Ensembl gene | ENSG00000081923 |
| Ensembl biotype | protein_coding |
| OMIM | 602397 |
| Entrez | 5205 |
Gene structure
Transcript identifiers
Ensembl transcripts: 24 — 18 protein_coding, 4 nonsense_mediated_decay, 1 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000585322, ENST00000588255, ENST00000589147, ENST00000591728, ENST00000642462, ENST00000648039, ENST00000648467, ENST00000648908, ENST00000857621, ENST00000857622, ENST00000857623, ENST00000857624, ENST00000857625, ENST00000857626, ENST00000857627, ENST00000857628, ENST00000857629, ENST00000938298, ENST00000967606, ENST00000967607, ENST00000967608, ENST00000967609, ENST00000967610, ENST00000967611
RefSeq mRNA: 3 — MANE Select: NM_001374385
NM_001374385, NM_001374386, NM_005603
CCDS: CCDS11965
Canonical transcript exons
ENST00000648908 — 28 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000950248 | 57697618 | 57697688 |
| ENSE00000950249 | 57695450 | 57695532 |
| ENSE00000950251 | 57694582 | 57694670 |
| ENSE00000950252 | 57691807 | 57691997 |
| ENSE00000950254 | 57685072 | 57685115 |
| ENSE00001011581 | 57688299 | 57688507 |
| ENSE00001011599 | 57695171 | 57695329 |
| ENSE00001011607 | 57684036 | 57684192 |
| ENSE00001011612 | 57674834 | 57675022 |
| ENSE00001159846 | 57650367 | 57650497 |
| ENSE00001159854 | 57652034 | 57652172 |
| ENSE00001159867 | 57653992 | 57654075 |
| ENSE00001159874 | 57655194 | 57655417 |
| ENSE00001159879 | 57661174 | 57661462 |
| ENSE00001178636 | 57662483 | 57662615 |
| ENSE00001178646 | 57668429 | 57668540 |
| ENSE00001178652 | 57669318 | 57669482 |
| ENSE00001178654 | 57671468 | 57671580 |
| ENSE00001221193 | 57652484 | 57652729 |
| ENSE00001221233 | 57667092 | 57667167 |
| ENSE00001221355 | 57646426 | 57648712 |
| ENSE00003460606 | 57704555 | 57704668 |
| ENSE00003497000 | 57706490 | 57706587 |
| ENSE00003508157 | 57701215 | 57701313 |
| ENSE00003527912 | 57697795 | 57697867 |
| ENSE00003667197 | 57701039 | 57701100 |
| ENSE00003820923 | 57731627 | 57731832 |
| ENSE00003839065 | 57802998 | 57803315 |
Expression profiles
Bgee: expression breadth ubiquitous, 289 present calls, max score 99.58.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 7.8558 / max 179.4195, expressed in 1223 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 172120 | 4.5847 | 1017 |
| 172117 | 2.2776 | 702 |
| 172118 | 0.6507 | 275 |
| 172119 | 0.2818 | 153 |
| 172116 | 0.0610 | 25 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cardia of stomach | UBERON:0001162 | 99.58 | gold quality |
| nipple | UBERON:0002030 | 99.56 | gold quality |
| renal medulla | UBERON:0000362 | 99.50 | gold quality |
| pylorus | UBERON:0001166 | 99.49 | gold quality |
| ventral tegmental area | UBERON:0002691 | 99.38 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 99.27 | gold quality |
| buccal mucosa cell | CL:0002336 | 99.24 | gold quality |
| superior surface of tongue | UBERON:0007371 | 99.21 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 99.13 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 99.12 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 99.00 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 98.92 | gold quality |
| sperm | CL:0000019 | 98.90 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 98.89 | gold quality |
| penis | UBERON:0000989 | 98.83 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 98.83 | gold quality |
| pericardium | UBERON:0002407 | 98.81 | gold quality |
| urethra | UBERON:0000057 | 98.76 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 98.76 | gold quality |
| colonic mucosa | UBERON:0000317 | 98.71 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 98.69 | gold quality |
| medulla oblongata | UBERON:0001896 | 98.69 | gold quality |
| vena cava | UBERON:0004087 | 98.67 | gold quality |
| synovial joint | UBERON:0002217 | 98.61 | gold quality |
| saphenous vein | UBERON:0007318 | 98.59 | gold quality |
| jejunal mucosa | UBERON:0000399 | 98.38 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 98.31 | gold quality |
| male germ cell | CL:0000015 | 98.21 | gold quality |
| body of tongue | UBERON:0011876 | 98.14 | gold quality |
| pons | UBERON:0000988 | 98.02 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-135922 | yes | 33.12 |
| E-ANND-3 | yes | 14.06 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): NR1H4
miRNA regulators (miRDB)
114 targeting ATP8B1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-188-3P | 100.00 | 68.76 | 1240 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-33A-5P | 99.99 | 68.62 | 1055 |
| HSA-MIR-33B-5P | 99.99 | 68.58 | 1062 |
| HSA-MIR-4789-5P | 99.98 | 70.76 | 2721 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
| HSA-MIR-363-3P | 99.98 | 74.72 | 1821 |
| HSA-MIR-367-3P | 99.98 | 74.83 | 1819 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-3688-3P | 99.97 | 72.02 | 2834 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-1468-3P | 99.96 | 72.74 | 3797 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-651-3P | 99.94 | 73.48 | 5177 |
Literature-anchored findings (GeneRIF, showing 40)
- three homologues found and two sequenced and two RNA transcript sizes analysed by northern blot: APT8B2, APT8B3, APT8B4 (PMID:12880872)
- Loss of familial intrahepatic cholestasis-1 leads to diminished nuclear translocation of farnesoid X receptor(FXR), with subsequent potential for pathologic alterations in intestinal and hepatic bile acid transporter expression (PMID:14988830)
- 54 distinct disease mutations: 10 mutations predicted to disrupt splicing, 6 nonsense mutations, 11 small insertion or deletion mutations predicted to induce frameshifts, 1 large genomic deletion, 2 small inframe deletions, and 24 missense mutations. (PMID:15239083)
- Loss of familial intrahepatic cholestasis-1 leads to diminished nuclear translocation of farnesoid X receptor(FXR), with subsequent potential for pathologic alterations in intestinal and hepatic bile acid transporter expression (PMID:15946126)
- Coexpression with CDC50 proteins resulted in relocalization of ATP8B1 from the endoplasmic reticulum to the plasma membrane. In the plasma membrane, ATP8B1 functions as a flippase for phosphatidylserine. (PMID:17948906)
- FIC1 signals to FXR via PKC zeta. FIC1-related liver disease is likely related to downstream effects of FXR on bile acid homeostasis. (PMID:18668687)
- ATP8B1 deficiency predisposes to cholestasis by favoring bile acid-induced injury in the canalicular membrane but does not directly affect FXR expression (PMID:19027009)
- Knockdown of ATP8B1 expression leads to specific downregulation of the bile acid sensor FXR in HepG2 cells: effect of the FXR agonist GW4064. (PMID:19228886)
- These results suggest that the PFIC1 mutants have a lower stimulatory effect on FXR activity and cannot interact with CDC50A, which may lead to the development of the features of PFIC1. (PMID:19381753)
- show that ATP8B1/Atp8b1 deficiency, both in patients and in Atp8b1(G308V/G308V) mutant mice, causes hearing loss, associated with progressive degeneration of cochlear hair cells (PMID:19478059)
- Post-liver transplantation steatosis may be due to a malfunction of the ATP8B1 product. (PMID:19479804)
- PFIC1 mutations lead to the complete absence of canalicular expression, whereas in BRIC1/ICP residual protein is expressed in the canalicular membrane. (PMID:19731236)
- Findings support the hypothesis that hepatocyte FIC1 enhances FXR signaling via a PKCzeta-dependent signaling pathway. (PMID:19809379)
- A surprisingly large proportion of ATP8B1 mutations resulted in aberrant folding and decreased expression at the plasma membrane. These effects were partially restored by treatment with 4-phenylbutyrate. (PMID:19918981)
- ATP8B1 gene mutations play an important role in Chinese patients with progressive intrahepatic cholestasis and low gamma-glutamyltransferase. The linked mutation P209T and IVS6+5G>T is a hot mutation in the Chinese population. (PMID:20038848)
- We now report evidence that heterozygous genetically determined alteration of ATP8B1 (encoding FIC1) may also represent a risk factor for transient neonatal cholestasis. (PMID:20216097)
- Progressive familial intrahepatic cholestasis types 1 & 2 differ clinically, biochemically, and histologically at presentation and/or during the disease course. A small proportion of normal-GGT PFIC is likely not due to ATP8B1 or ABCB11 mutations. (PMID:20232290)
- Data identified three novel mutations in BSEP, one novel mutation in MDR3, and one heterozygous mutation in ATP8B1 in PFIC patients. (PMID:20414253)
- facilitating diagnosis and elucidating the differing consequences of ATP8B1 and ABCB11 mutations in progressive familial intrahepatic cholestasis (PMID:20447715)
- critical role in apical membrane organization that is unrelated to its presumed aminophospholipid translocase activity (PMID:20512993)
- Sequence analysis of the genes identified 27% cholestasis subjects with missense, nonsense, deletion, and splice site variants associated with disease phenotypes based on the type of mutation in the JAG1, ATP8B1, ABCB11, or ABCB4 genes. (PMID:20683201)
- results unveil a new paradigm whereby Atp8b1 is a cardiolipin importer whose capacity to remove cardiolipin from lung fluid is exceeded during inflammation or when Atp8b1 is defective (PMID:20852622)
- Novel splice-site mutation in ATP8B1 results in atypical progressive familial intrahepatic cholestasis type 1. (PMID:23033845)
- Biochemical analysis of P4-ATPase mutations identified in patients with progressive familial intrahepatic cholestasis (PMID:23060447)
- Case Report: missense ATP8B1 mutation in adult male with progressive familial intrahepatic cholestasis type 1. (PMID:23197899)
- FIC1 signals to FXR via a signaling pathway including PLD2 and PKCzeta (PMID:23213138)
- The basal expression of ATP8B1 is driven by a housekeeping-like promoter located 71 kb upstream of the first protein coding exon, and is independent of bile acids and farnesoid X receptor. (PMID:23251605)
- Case Report: suggest contribution of ATP8B1 mutations to drug-induced liver injury from anabolic androgenic steroids marketed as dietary supplements. (PMID:23750872)
- We did not find an association between heterozygous ATP8B1 variants and chronic pancreatitis in our cohort of patients with hereditary and idiopathic chronic pancreatitis. (PMID:24260417)
- Data indicate that the lipid flippase (ATP8B1)-transmembrane protein 30A (CDC50A) heterodimer is essential for the apical localization of sodium-dependent bile acid transporter (SLC10A2/ASBT) in Caco-2 cells. (PMID:25239307)
- We systematically characterized the molecular consequences of 14 ATP8B1 mutations at exon-intron boundaries associated with ATP8B1 deficiency and found that the majority resulted in total exon skipping (PMID:25421123)
- insufficient activity of Atp8b1/FIC1 increases susceptibility to bacterial pneumonia. (PMID:26050466)
- the predominant P4 ATPases in pure pancreatic beta cells and human and rat pancreatic islets were ATP8B1, ATP8B2, and ATP9A. ATP8B1 and CDC50A were highly concentrated in ISG (PMID:26240149)
- As hypothyroidism can be another extrahepatic feature of ATP8B1 deficiency, thyroid function should be monitored in these patients. (PMID:26382629)
- GGT levels in patients with ATP8B1 or ABCB11 deficiency varied with age. The peak GGT value was <70U/L in the 2nd
6th month of life, <60U/L in the 7th12th month and <50U/L beyond one year (PMID:27050426) - ATP8B1 is important for proper CFTR expression and function. (PMID:27301931)
- The lipid flippases, ATP8B1 and ATP11A are novel elements of the innate immune response that are essential to attenuate the inflammatory response, possibly by mediating endotoxin-induced internalization of TLR4. (PMID:27628304)
- Patients with a confirmed ABCB11 or tight junction protein 2 gene mutation (n = 7) had a minimally detectable THBA proportion (0.23-2.99% of total BAs). Three patients with an ATP8B1 mutation had an elevated THBA proportion (7.51-37.26%). (PMID:28073941)
- the first characterisation at the protein level of six ABCB4 variants (D243A, K435T, G535D, I490T, R545C, and S978P) previously found in patients with inflammatory liver diseases or liver cancer, is reported. (PMID:28220208)
- FIC1, BSEP, and MDR3 represent hepatobiliary transport proteins essential for bile formation. (PMID:28733223)
Cross-species orthologs
8 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | atp8b1 | ENSDARG00000060980 |
| mus_musculus | Atp8b1 | ENSMUSG00000039529 |
| rattus_norvegicus | Atp8b1 | ENSRNOG00000024952 |
| drosophila_melanogaster | CG9981 | FBGN0030746 |
| drosophila_melanogaster | CG4301 | FBGN0030747 |
| drosophila_melanogaster | CG31729 | FBGN0051729 |
| caenorhabditis_elegans | tat-5 | WBGENE00009498 |
| caenorhabditis_elegans | WBGENE00017174 |
Paralogs (13): ATP9A (ENSG00000054793), ATP11B (ENSG00000058063), ATP11A (ENSG00000068650), ATP11C (ENSG00000101974), ATP8B4 (ENSG00000104043), ATP10B (ENSG00000118322), ATP8A1 (ENSG00000124406), ATP8B3 (ENSG00000130270), ATP8A2 (ENSG00000132932), ATP8B2 (ENSG00000143515), ATP10D (ENSG00000145246), ATP9B (ENSG00000166377), ATP10A (ENSG00000206190)
Protein
Protein identifiers
Phospholipid-transporting ATPase IC — O43520 (reviewed: O43520)
Alternative names: ATPase class I type 8B member 1, Familial intrahepatic cholestasis type 1, P4-ATPase flippase complex alpha subunit ATP8B1
All UniProt accessions (5): O43520, A0A2R8Y5C5, A0A3B3IRQ1, K7EQC4, K7ESK2
UniProt curated annotations — full annotation on UniProt →
Function. Catalytic component of a P4-ATPase flippase complex which catalyzes the hydrolysis of ATP coupled to the transport of phospholipids, in particular phosphatidylcholines (PC), from the outer to the inner leaflet of the plasma membrane. May participate in the establishment of the canalicular membrane integrity by ensuring asymmetric distribution of phospholipids in the canicular membrane. Thus may have a role in the regulation of bile acids transport into the canaliculus, uptake of bile acids from intestinal contents into intestinal mucosa or both and protect hepatocytes from bile salts. Involved in the microvillus formation in polarized epithelial cells; the function seems to be independent from its flippase activity. Participates in correct apical membrane localization of CDC42, CFTR and SLC10A2. Enables CDC42 clustering at the apical membrane during enterocyte polarization through the interaction between CDC42 polybasic region and negatively charged membrane lipids provided by ATP8B1. Together with TMEM30A is involved in uptake of the synthetic drug alkylphospholipid perifosine. Required for the preservation of cochlear hair cells in the inner ear. May act as cardiolipin transporter during inflammatory injury.
Subunit / interactions. Component of a P4-ATPase flippase complex which consists of a catalytic alpha subunit ATP8B1 and an accessory beta subunit TMEM30A. The flippase ATP8B1:TMEM30A complex can form an intermediate phosphoenzyme in vitro. Also interacts with beta subunit TMEM30B.
Subcellular location. Cell membrane. Apical cell membrane. Cell projection. Stereocilium. Endoplasmic reticulum. Golgi apparatus.
Tissue specificity. Found in most tissues except brain and skeletal muscle. Most abundant in pancreas and small intestine.
Disease relevance. Cholestasis, progressive familial intrahepatic, 1 (PFIC1) [MIM:211600] A disorder characterized by early onset of cholestasis that progresses to hepatic fibrosis, cirrhosis, and end-stage liver disease before adulthood. PFIC1 inheritance is autosomal recessive. The disease is caused by variants affecting the gene represented in this entry. Cholestasis, benign recurrent intrahepatic, 1 (BRIC1) [MIM:243300] A disorder characterized by intermittent episodes of cholestasis without progression to liver failure. There is initial elevation of serum bile acids, followed by cholestatic jaundice which generally spontaneously resolves after periods of weeks to months. The cholestatic attacks vary in severity and duration. Patients are asymptomatic between episodes, both clinically and biochemically. The disease is caused by variants affecting the gene represented in this entry. Cholestasis of pregnancy, intrahepatic 1 (ICP1) [MIM:147480] A liver disorder of pregnancy. It presents during the second or, more commonly, the third trimester of pregnancy with intense pruritus which becomes more severe with advancing gestation and cholestasis. Cholestasis results from abnormal biliary transport from the liver into the small intestine. ICP1 causes fetal distress, spontaneous premature delivery and intrauterine death. ICP1 patients have spontaneous and progressive disappearance of cholestasis after delivery. The disease may be caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
RefSeq proteins (3): NP_001361314, NP_001361315, NP_005594 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001757 | P_typ_ATPase | Family |
| IPR006539 | P-type_ATPase_IV | Family |
| IPR008250 | ATPase_P-typ_transduc_dom_A_sf | Homologous_superfamily |
| IPR018303 | ATPase_P-typ_P_site | PTM |
| IPR023214 | HAD_sf | Homologous_superfamily |
| IPR023298 | ATPase_P-typ_TM_dom_sf | Homologous_superfamily |
| IPR023299 | ATPase_P-typ_cyto_dom_N | Homologous_superfamily |
| IPR032630 | P_typ_ATPase_c | Domain |
| IPR032631 | P-type_ATPase_N | Domain |
| IPR036412 | HAD-like_sf | Homologous_superfamily |
| IPR044492 | P_typ_ATPase_HD_dom | Domain |
| IPR059000 | ATPase_P-type_domA | Domain |
Pfam: PF00122, PF13246, PF16209, PF16212
Enzyme classification (BRENDA):
- EC 7.6.2.1 — P-type phospholipid transporter (BRENDA: 22 organisms, 260 substrates, 62 inhibitors, 53 Km, 0 kcat entries)
Substrate kinetics (BRENDA)
4 substrates with measured Km, best-characterized 4. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| ATP | 0.016–2.215 | 41 |
| P-NITROPHENYL PHOSPHATE | 1.17–1.46 | 3 |
| ACETYL PHOSPHATE | 1.03–1.31 | 2 |
| 1-PALMITOYL-2-OLEOYL-SN-GLYCERO-3-PHOSPHO-L-SERI | 0.111 | 1 |
Catalyzed reactions (Rhea), 2 shown:
- a 1,2-diacyl-sn-glycero-3-phospho-L-serine(out) + ATP + H2O = a 1,2-diacyl-sn-glycero-3-phospho-L-serine(in) + ADP + phosphate + H(+) (RHEA:38567)
- a 1,2-diacyl-sn-glycero-3-phosphocholine(out) + ATP + H2O = a 1,2-diacyl-sn-glycero-3-phosphocholine(in) + ADP + phosphate + H(+) (RHEA:38583)
UniProt features (211 total): helix 54, strand 48, sequence variant 45, binding site 18, turn 16, topological domain 11, transmembrane region 10, compositionally biased region 2, mutagenesis site 2, chain 1, region of interest 1, active site 1, modified residue 1, sequence conflict 1
Structure
Experimental structures (PDB)
13 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8OX6 | ELECTRON MICROSCOPY | 2.39 |
| 8OX7 | ELECTRON MICROSCOPY | 2.56 |
| 8OXC | ELECTRON MICROSCOPY | 2.58 |
| 8OX9 | ELECTRON MICROSCOPY | 2.72 |
| 8OXA | ELECTRON MICROSCOPY | 2.76 |
| 8OX5 | ELECTRON MICROSCOPY | 2.9 |
| 8OX8 | ELECTRON MICROSCOPY | 2.98 |
| 8OXB | ELECTRON MICROSCOPY | 2.99 |
| 7PY4 | ELECTRON MICROSCOPY | 3.1 |
| 7VGI | ELECTRON MICROSCOPY | 3.36 |
| 7VGH | ELECTRON MICROSCOPY | 3.39 |
| 8OX4 | ELECTRON MICROSCOPY | 3.4 |
| 7VGJ | ELECTRON MICROSCOPY | 3.98 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O43520-F1 | 80.42 | 0.36 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 454 (4-aspartylphosphate intermediate)
Ligand- & substrate-binding residues (18): 454; 454; 455; 456; 456; 555; 596; 619; 652; 732; 733; 734 …
Post-translational modifications (1): 1223
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 234 | impaired pc flippase activity. |
| 454 | greatly reduced expression due to proteosomal degradation; abolishes interaction with tmem30a. |
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-936837 | Ion transport by P-type ATPases |
| R-HSA-382551 | Transport of small molecules |
| R-HSA-983712 | Ion channel transport |
MSigDB gene sets: 353 (showing top):
GOBP_APICAL_PROTEIN_LOCALIZATION, MORF_FLT1, MORF_MSH3, DACOSTA_UV_RESPONSE_VIA_ERCC3_XPCS_DN, GOBP_SENSORY_PERCEPTION_OF_MECHANICAL_STIMULUS, MORF_BRCA1, GOBP_PLASMA_MEMBRANE_ORGANIZATION, GOBP_INORGANIC_ANION_TRANSPORT, GOBP_NEUROGENESIS, GOBP_CRANIAL_NERVE_MORPHOGENESIS, GOBP_XENOBIOTIC_TRANSMEMBRANE_TRANSPORT, GOBP_MONOCARBOXYLIC_ACID_METABOLIC_PROCESS, GOBP_REGULATION_OF_CELLULAR_COMPONENT_BIOGENESIS, GGGTGGRR_PAX4_03, GOBP_CRANIAL_NERVE_DEVELOPMENT
GO Biological Process (20): xenobiotic transmembrane transport (GO:0006855), Golgi organization (GO:0007030), sensory perception of sound (GO:0007605), bile acid metabolic process (GO:0008206), bile acid and bile salt transport (GO:0015721), vestibulocochlear nerve formation (GO:0021650), regulation of microvillus assembly (GO:0032534), monoatomic ion transmembrane transport (GO:0034220), apical protein localization (GO:0045176), phospholipid translocation (GO:0045332), negative regulation of DNA-templated transcription (GO:0045892), inner ear receptor cell development (GO:0060119), regulation of plasma membrane organization (GO:1903729), regulation of chloride transport (GO:2001225), lipid transport (GO:0006869), obsolete organic anion transport (GO:0015711), phospholipid transport (GO:0015914), aminophospholipid transport (GO:0015917), lipid translocation (GO:0034204), aminophospholipid translocation (GO:0140331)
GO Molecular Function (17): magnesium ion binding (GO:0000287), ATP binding (GO:0005524), ATP hydrolysis activity (GO:0016887), phosphatidylcholine floppase activity (GO:0090554), phosphatidylserine floppase activity (GO:0090556), ATPase-coupled intramembrane lipid carrier activity (GO:0140326), phosphatidylcholine flippase activity (GO:0140345), phosphatidylserine flippase activity (GO:0140346), cardiolipin binding (GO:1901612), nucleotide binding (GO:0000166), transporter activity (GO:0005215), lipid carrier activity (GO:0005319), protein binding (GO:0005515), obsolete phospholipid transporter activity (GO:0005548), aminophospholipid flippase activity (GO:0015247), metal ion binding (GO:0046872), flippase activity (GO:0140327)
GO Cellular Component (13): nucleoplasm (GO:0005654), endoplasmic reticulum (GO:0005783), Golgi apparatus (GO:0005794), trans-Golgi network (GO:0005802), cytosol (GO:0005829), plasma membrane (GO:0005886), apical plasma membrane (GO:0016324), nuclear body (GO:0016604), stereocilium (GO:0032420), phospholipid-translocating ATPase complex (GO:1990531), endomembrane system (GO:0012505), membrane (GO:0016020), cell projection (GO:0042995)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Ion channel transport | 1 |
| Transport of small molecules | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 5 |
| lipid transport | 3 |
| cytoplasm | 3 |
| transmembrane transport | 2 |
| phospholipid transport | 2 |
| ATP-dependent activity | 2 |
| phosphatidylcholine intramembrane carrier activity | 2 |
| floppase activity | 2 |
| glycerophospholipid flippase activity | 2 |
| endomembrane system | 2 |
| intracellular membrane-bounded organelle | 2 |
| xenobiotic transport | 1 |
| organelle organization | 1 |
| endomembrane system organization | 1 |
| sensory perception of mechanical stimulus | 1 |
| steroid metabolic process | 1 |
| monocarboxylic acid metabolic process | 1 |
| monocarboxylic acid transport | 1 |
| organic hydroxy compound transport | 1 |
| cranial nerve formation | 1 |
| vestibulocochlear nerve morphogenesis | 1 |
| microvillus assembly | 1 |
| regulation of microvillus organization | 1 |
| regulation of plasma membrane bounded cell projection assembly | 1 |
| monoatomic ion transport | 1 |
| intracellular protein localization | 1 |
| lipid translocation | 1 |
| DNA-templated transcription | 1 |
| regulation of DNA-templated transcription | 1 |
| negative regulation of RNA biosynthetic process | 1 |
| neuron development | 1 |
| inner ear receptor cell differentiation | 1 |
| plasma membrane organization | 1 |
| regulation of cellular component organization | 1 |
| chloride transport | 1 |
| regulation of monoatomic anion transport | 1 |
| transport | 1 |
| lipid localization | 1 |
| organophosphate ester transport | 1 |
| nitrogen compound transport | 1 |
Protein interactions and networks
STRING
1270 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ATP8B1 | ABCB11 | O95342 | 990 |
| ATP8B1 | ABCB4 | P21439 | 924 |
| ATP8B1 | CDC50A | Q9NV96 | 859 |
| ATP8B1 | NR1H4 | Q96RI1 | 846 |
| ATP8B1 | NR0B2 | Q15466 | 795 |
| ATP8B1 | CDC50B | Q3MIR4 | 768 |
| ATP8B1 | ABCC2 | Q92887 | 744 |
| ATP8B1 | AKR1D1 | P51857 | 648 |
| ATP8B1 | TJP2 | Q9UDY2 | 638 |
| ATP8B1 | BAAT | Q14032 | 591 |
| ATP8B1 | SLC10A2 | Q12908 | 589 |
| ATP8B1 | FABP6 | P51161 | 585 |
| ATP8B1 | ABCG5 | Q9H222 | 584 |
| ATP8B1 | SLC10A1 | Q14973 | 576 |
| ATP8B1 | MYO5B | Q9ULV0 | 576 |
IntAct
17 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ATP8B1 | TMEM30A | psi-mi:“MI:0915”(physical association) | 0.880 |
| ATP8B1 | TMEM30A | psi-mi:“MI:0403”(colocalization) | 0.880 |
| TMEM30A | ATP8B1 | psi-mi:“MI:0915”(physical association) | 0.880 |
| TMEM30B | ATP8B1 | psi-mi:“MI:0915”(physical association) | 0.740 |
| ATP8B1 | TMEM30B | psi-mi:“MI:0915”(physical association) | 0.740 |
| ATP8B1 | TMEM30B | psi-mi:“MI:0403”(colocalization) | 0.740 |
| TMEM30B | ATP8B1 | psi-mi:“MI:0403”(colocalization) | 0.740 |
| ATP8B1 | NUP153 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| SHTN1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (9): ATP8B1 (Affinity Capture-RNA), ATP8B1 (Affinity Capture-RNA), ATP8B1 (Synthetic Lethality), ATP8B1 (Affinity Capture-MS), ATP8B1 (Affinity Capture-RNA), CKAP4 (Cross-Linking-MS (XL-MS)), ATP8B1 (Affinity Capture-RNA), TMEM30A (Affinity Capture-Western), TMEM30B (Affinity Capture-Western)
ESM2 similar proteins: A1A4J6, D4ABB8, F1Q4S1, G5EBH1, O14072, O43520, O43861, O70228, O75110, P09626, P19156, P20648, P27112, P40527, P50996, P57792, P90747, P98195, P98196, P98197, P98198, P98199, Q10309, Q27533, Q3TYU2, Q4VNC1, Q4WYP6, Q5XF89, Q5XF90, Q5ZKB7, Q64436, Q6DFW5, Q8NB49, Q92126, Q93084, Q95JN5, Q9EPE9, Q9H7F0, Q9HD20, Q9LI83
Diamond homologs: A1A4J6, A3FIN4, B1AWN4, C7EXK4, D4AA47, D4ABB8, F1Q4S1, G0S196, G2X7W6, G5EBH1, O36028, O43520, O43861, O54827, O60312, O60423, O94296, O94823, P32660, P39524, P40527, P57792, P70704, P98195, P98196, P98197, P98198, P98199, P98200, P98204, P98205, Q09891, Q10309, Q12675, Q148W0, Q29449, Q37145, Q5BL50, Q6DFW5, Q6UQ17
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| ATP8B1 | up-regulates | ATP2B2 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
1269 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 88 |
| Likely pathogenic | 54 |
| Uncertain significance | 366 |
| Likely benign | 493 |
| Benign | 128 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1195884 | NM_001374385.1(ATP8B1):c.-25-4014_181+2209del | Pathogenic |
| 1195885 | NC_000018.9:g.55335906_55346620dup | Pathogenic |
| 126382 | NM_001374385.1(ATP8B1):c.1993G>T (p.Glu665Ter) | Pathogenic |
| 1301678 | NM_001374385.1(ATP8B1):c.3040C>T (p.Arg1014Ter) | Pathogenic |
| 1687217 | NM_001374385.1(ATP8B1):c.213dup (p.Lys72fs) | Pathogenic |
| 1698723 | NM_001374385.1(ATP8B1):c.2821C>T (p.Arg941Ter) | Pathogenic |
| 1698811 | NM_001374385.1(ATP8B1):c.1573C>T (p.Arg525Ter) | Pathogenic |
| 2425385 | NC_000018.9:g.(?55328386)(55328714_?)del | Pathogenic |
| 2627551 | NM_001374385.1(ATP8B1):c.2500_2588del (p.Met834fs) | Pathogenic |
| 2679853 | NM_001374385.1(ATP8B1):c.1214_1215del (p.Tyr405fs) | Pathogenic |
| 2679854 | NM_001374385.1(ATP8B1):c.811A>T (p.Arg271Ter) | Pathogenic |
| 2687798 | NM_001374385.1(ATP8B1):c.555-1G>C | Pathogenic |
| 2687832 | NM_001374385.1(ATP8B1):c.2614dup (p.Gln872fs) | Pathogenic |
| 2699206 | NM_001374385.1(ATP8B1):c.3082_3091del (p.Phe1028fs) | Pathogenic |
| 2706283 | NM_001374385.1(ATP8B1):c.2680_2681insTTATATAGATGAACGTG (p.Gly894delinsValIleTer) | Pathogenic |
| 2713995 | NM_001374385.1(ATP8B1):c.1172del (p.Gly391fs) | Pathogenic |
| 2725205 | NM_001374385.1(ATP8B1):c.1105dup (p.Ser369fs) | Pathogenic |
| 2728500 | NM_001374385.1(ATP8B1):c.3473_3476dup (p.Val1160fs) | Pathogenic |
| 2736742 | NM_001374385.1(ATP8B1):c.3069_3070del (p.Asp1025fs) | Pathogenic |
| 2736744 | NM_001374385.1(ATP8B1):c.2788C>T (p.Arg930Ter) | Pathogenic |
| 2736746 | NM_001374385.1(ATP8B1):c.1607_1608del (p.Thr536fs) | Pathogenic |
| 2744846 | NM_001374385.1(ATP8B1):c.426C>A (p.Tyr142Ter) | Pathogenic |
| 2749908 | NM_001374385.1(ATP8B1):c.2946_2947insGCTTGTATGTTTTTATCTTTATCTTTGGTTATTTTTTCATGTTGACATTAAGAGTAGCG (p.Trp983delinsAlaCysMetPheLeuSerLeuSerLeuValIlePheSerCysTer) | Pathogenic |
| 2767042 | NM_001374385.1(ATP8B1):c.1381C>T (p.Gln461Ter) | Pathogenic |
| 2770196 | NM_001374385.1(ATP8B1):c.3247del (p.Thr1083fs) | Pathogenic |
| 2780781 | NM_001374385.1(ATP8B1):c.3438G>A (p.Trp1146Ter) | Pathogenic |
| 2801695 | NM_001374385.1(ATP8B1):c.2947_2948insTGCTTGTATGTTTTTATCTTTATCTTTGGTTATTTTTTCATGTTGACATTAAGAGTAGCGT (p.Trp983fs) | Pathogenic |
| 2830014 | NM_001374385.1(ATP8B1):c.2131C>T (p.Gln711Ter) | Pathogenic |
| 2833127 | NM_001374385.1(ATP8B1):c.3113T>A (p.Leu1038Ter) | Pathogenic |
| 2836172 | NM_001374385.1(ATP8B1):c.1402A>T (p.Lys468Ter) | Pathogenic |
SpliceAI
4105 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 18:57648708:TGGAT:T | acceptor_gain | 1.0000 |
| 18:57648709:GGAT:G | acceptor_gain | 1.0000 |
| 18:57648710:GAT:G | acceptor_gain | 1.0000 |
| 18:57648711:AT:A | acceptor_gain | 1.0000 |
| 18:57648713:C:CC | acceptor_gain | 1.0000 |
| 18:57652185:C:CT | acceptor_gain | 1.0000 |
| 18:57653987:CCTA:C | donor_loss | 1.0000 |
| 18:57653988:CTAC:C | donor_loss | 1.0000 |
| 18:57653990:A:AG | donor_loss | 1.0000 |
| 18:57653991:C:A | donor_loss | 1.0000 |
| 18:57654071:GCAGT:G | acceptor_gain | 1.0000 |
| 18:57654072:CAGT:C | acceptor_gain | 1.0000 |
| 18:57654072:CAGTC:C | acceptor_gain | 1.0000 |
| 18:57654073:AGT:A | acceptor_gain | 1.0000 |
| 18:57654074:GT:G | acceptor_gain | 1.0000 |
| 18:57654075:TC:T | acceptor_loss | 1.0000 |
| 18:57654076:C:CC | acceptor_gain | 1.0000 |
| 18:57654076:CT:C | acceptor_loss | 1.0000 |
| 18:57654077:T:G | acceptor_loss | 1.0000 |
| 18:57655189:ATTAC:A | donor_loss | 1.0000 |
| 18:57655190:TTA:T | donor_loss | 1.0000 |
| 18:57655191:TAC:T | donor_loss | 1.0000 |
| 18:57655193:C:G | donor_loss | 1.0000 |
| 18:57655286:T:TA | donor_gain | 1.0000 |
| 18:57655413:GGCAG:G | acceptor_gain | 1.0000 |
| 18:57655414:GCAG:G | acceptor_gain | 1.0000 |
| 18:57655415:CAG:C | acceptor_gain | 1.0000 |
| 18:57655415:CAGC:C | acceptor_gain | 1.0000 |
| 18:57655416:AG:A | acceptor_gain | 1.0000 |
| 18:57655417:GCTAT:G | acceptor_loss | 1.0000 |
AlphaMissense
8306 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 18:57655414:G:T | A904D | 1.000 |
| 18:57661190:G:C | D897E | 1.000 |
| 18:57661190:G:T | D897E | 1.000 |
| 18:57661191:T:A | D897V | 1.000 |
| 18:57661191:T:C | D897G | 1.000 |
| 18:57661191:T:G | D897A | 1.000 |
| 18:57661192:C:A | D897Y | 1.000 |
| 18:57661192:C:G | D897H | 1.000 |
| 18:57661193:A:C | N896K | 1.000 |
| 18:57661193:A:T | N896K | 1.000 |
| 18:57661200:C:T | G894E | 1.000 |
| 18:57661201:C:A | G894W | 1.000 |
| 18:57661201:C:G | G894R | 1.000 |
| 18:57661201:C:T | G894R | 1.000 |
| 18:57661203:T:A | D893V | 1.000 |
| 18:57661203:T:G | D893A | 1.000 |
| 18:57661206:C:A | G892V | 1.000 |
| 18:57661206:C:T | G892E | 1.000 |
| 18:57661207:C:G | G892R | 1.000 |
| 18:57661207:C:T | G892R | 1.000 |
| 18:57661215:A:G | L889P | 1.000 |
| 18:57661262:C:A | K873N | 1.000 |
| 18:57661262:C:G | K873N | 1.000 |
| 18:57661264:T:G | K873Q | 1.000 |
| 18:57661281:C:G | R867P | 1.000 |
| 18:57661283:G:C | C866W | 1.000 |
| 18:57661288:A:G | C865R | 1.000 |
| 18:57667149:C:T | G743E | 1.000 |
| 18:57667161:G:T | A739D | 1.000 |
| 18:57667162:C:G | A739P | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000024405 (18:57656446 C>T), RS1000034562 (18:57771674 A>G), RS1000049581 (18:57739765 A>G), RS1000051511 (18:57736921 T>C), RS1000054306 (18:57779615 T>C), RS1000102840 (18:57734898 C>A), RS1000106726 (18:57681782 C>T), RS1000115500 (18:57783938 A>G), RS1000142994 (18:57737240 C>A,T), RS1000230329 (18:57746298 T>C), RS1000230700 (18:57760998 A>C), RS1000245772 (18:57712038 C>A,T), RS1000276375 (18:57730928 T>A), RS1000299352 (18:57706825 T>C,G), RS1000317405 (18:57659875 T>G)
Disease associations
OMIM: gene MIM:602397 | disease phenotypes: MIM:243300, MIM:211600, MIM:147480, MIM:601847
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| progressive familial intrahepatic cholestasis type 1 | Definitive | Autosomal recessive |
| cholestasis, intrahepatic, of pregnancy, 1 | Strong | Autosomal dominant |
| progressive familial intrahepatic cholestasis | Strong | Autosomal recessive |
Mondo (6): benign recurrent intrahepatic cholestasis type 1 (MONDO:0009469), progressive familial intrahepatic cholestasis type 1 (MONDO:0008892), familial intrahepatic cholestasis (MONDO:0017290), cholestasis, intrahepatic, of pregnancy, 1 (MONDO:0007829), progressive familial intrahepatic cholestasis (MONDO:0015762), progressive familial intrahepatic cholestasis type 2 (MONDO:0011156)
Orphanet (7): Benign recurrent intrahepatic cholestasis (Orphanet:65682), Benign recurrent intrahepatic cholestasis type 1 (Orphanet:99960), Progressive familial intrahepatic cholestasis type 1 (Orphanet:79306), Familial intrahepatic cholestasis (Orphanet:284385), Intrahepatic cholestasis of pregnancy (Orphanet:69665), Progressive familial intrahepatic cholestasis (Orphanet:172), Progressive familial intrahepatic cholestasis type 2 (Orphanet:79304)
HPO phenotypes
57 total (30 of 57 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000365 | Hearing impairment |
| HP:0000421 | Epistaxis |
| HP:0000716 | Depression |
| HP:0000821 | Hypothyroidism |
| HP:0000938 | Osteopenia |
| HP:0000952 | Jaundice |
| HP:0000988 | Skin rash |
| HP:0000989 | Pruritus |
| HP:0001046 | Intermittent jaundice |
| HP:0001081 | Cholelithiasis |
| HP:0001082 | Cholecystitis |
| HP:0001337 | Tremor |
| HP:0001394 | Cirrhosis |
| HP:0001406 | Intrahepatic cholestasis |
| HP:0001408 | Bile duct proliferation |
| HP:0001508 | Failure to thrive |
| HP:0001518 | Small for gestational age |
| HP:0001541 | Ascites |
| HP:0001622 | Premature birth |
| HP:0001732 | Abnormality of the pancreas |
| HP:0001733 | Pancreatitis |
| HP:0001744 | Splenomegaly |
| HP:0002014 | Diarrhea |
| HP:0002024 | Malabsorption |
| HP:0002027 | Abdominal pain |
| HP:0002240 | Hepatomegaly |
| HP:0002630 | Fat malabsorption |
| HP:0002643 | Neonatal respiratory distress |
GWAS associations
16 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000253_3 | Attention deficit hyperactivity disorder and conduct disorder | 6.000000e-06 |
| GCST000520_3 | Vitiligo | 3.000000e-06 |
| GCST001277_5 | Liver enzyme levels (gamma-glutamyl transferase) | 9.000000e-10 |
| GCST002690_14 | Very long-chain saturated fatty acid levels (fatty acid 20:0) | 4.000000e-06 |
| GCST002932_7 | Manganese levels | 6.000000e-06 |
| GCST007209_20 | Gallstone disease | 1.000000e-08 |
| GCST008362_65 | Birth weight | 9.000000e-09 |
| GCST010083_16 | Hemoglobin levels | 4.000000e-14 |
| GCST011974_11 | Lung cancer | 4.000000e-06 |
| GCST90002383_90 | Hematocrit | 2.000000e-13 |
| GCST90002384_438 | Hemoglobin | 1.000000e-12 |
| GCST90002403_338 | Red blood cell count | 5.000000e-14 |
| GCST90013405_140 | Liver enzyme levels (alanine transaminase) | 1.000000e-30 |
| GCST90013407_17 | Liver enzyme levels (gamma-glutamyl transferase) | 6.000000e-42 |
| GCST90013663_87 | Alanine aminotransferase levels | 6.000000e-28 |
| GCST90013664_51 | Aspartate aminotransferase levels | 5.000000e-11 |
EFO canonical traits (7, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004532 | serum gamma-glutamyl transferase measurement |
| EFO:0006796 | very long-chain saturated fatty acid measurement |
| EFO:0004344 | birth weight |
| EFO:0004509 | hemoglobin measurement |
| EFO:0004348 | hematocrit |
| EFO:0004305 | erythrocyte count |
| EFO:0004736 | aspartate aminotransferase measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: transporter — P4 P-type ATPases: Phospholipid-transporting ATPases
CTD chemical–gene interactions
67 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression | 6 |
| Estradiol | increases expression, affects expression, affects cotreatment, decreases expression | 5 |
| trichostatin A | increases expression, affects cotreatment | 4 |
| Air Pollutants | increases abundance, decreases expression | 3 |
| Benzo(a)pyrene | decreases expression, increases methylation | 3 |
| Tobacco Smoke Pollution | affects expression, decreases expression, increases expression | 3 |
| bisphenol A | decreases expression, decreases methylation | 2 |
| mercuric bromide | increases expression, affects cotreatment | 2 |
| entinostat | increases expression, affects cotreatment | 2 |
| belinostat | increases expression, affects cotreatment | 2 |
| Panobinostat | affects cotreatment, increases expression | 2 |
| Acetaminophen | decreases expression, affects cotreatment | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Progesterone | decreases expression, affects cotreatment | 2 |
| Cyclosporine | decreases expression, affects cotreatment | 2 |
| p-Chloromercuribenzoic Acid | affects cotreatment, increases expression | 2 |
| Particulate Matter | decreases expression, increases abundance | 2 |
| testosterone enanthate | affects expression | 1 |
| methylmercuric chloride | increases expression | 1 |
| beta-lapachone | decreases expression | 1 |
| enilconazole | increases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| manganese chloride | increases abundance, increases expression | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| 1-nitropyrene | increases expression | 1 |
| triadimefon | decreases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression, affects cotreatment, decreases expression | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| gadodiamide | increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
Clinical trials (associated diseases)
28 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT03353454 | PHASE3 | WITHDRAWN | A Placebo-controlled Study of Maralixibat (SHP625) in Pediatric Subjects With Progressive Familial Intrahepatic Cholestasis (PFIC) |
| NCT03566238 | PHASE3 | COMPLETED | This Study Will Investigate the Efficacy and Safety of A4250 in Children With PFIC Types 1 or 2 |
| NCT03659916 | PHASE3 | COMPLETED | Long Term Safety & Efficacy Study Evaluating The Effect of A4250 in Children With PFIC |
| NCT03905330 | PHASE3 | COMPLETED | A Study to Evaluate the Efficacy and Safety of Maralixibat in Subjects With Progressive Familial Intrahepatic Cholestasis (MARCH-PFIC) |
| NCT04185363 | PHASE3 | COMPLETED | An Extension Study of Maralixibat in Patients With Progressive Familial Intrahepatic Cholestasis (PFIC) |
| NCT05543187 | PHASE3 | COMPLETED | A Study of TAK-625 for the Treatment of Progressive Familial Intrahepatic Cholestasis (PFIC) |
| NCT02057718 | PHASE2 | COMPLETED | Open Label Study to Evaluate Efficacy and Long Term Safety of LUM001 (Maralixibat) in the Treatment of Cholestatic Liver Disease in Patients With Progressive Familial Intrahepatic Cholestasis |
| NCT04729751 | PHASE2 | COMPLETED | A Study to Evaluate the Safety and Tolerability of Maralixibat in Infant Participants With Cholestatic Liver Diseases Including Progressive Familial Intrahepatic Cholestasis (PFIC) and Alagille Syndrome (ALGS). |
| NCT02963077 | PHASE1 | COMPLETED | A Safety and Pharmakokinetic Study of A4250 Alone or in Combination With A3384 |
| NCT03082937 | PHASE1 | COMPLETED | An Open Label, Single-dose, Single Period ADME Study of A4250 in Healthy Subjects |
| NCT03428555 | Not specified | UNKNOWN | Integrated Care Pathway for Youth Depression |
| NCT01784718 | Not specified | NO_LONGER_AVAILABLE | Buphenyl Therapy for Byler’s Disease |
| NCT01949766 | Not specified | NO_LONGER_AVAILABLE | Transition From Buphenyl to RAVICTI for the Therapy of Byler Disease |
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Related Atlas pages
- Associated diseases: cholestasis, intrahepatic, of pregnancy, 1, progressive familial intrahepatic cholestasis type 1
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): benign recurrent intrahepatic cholestasis type 1, cholestasis, intrahepatic, of pregnancy, 1, conduct disorder, familial intrahepatic cholestasis, gallstones, lung cancer, progressive familial intrahepatic cholestasis, progressive familial intrahepatic cholestasis type 1, progressive familial intrahepatic cholestasis type 2