AUTS2
geneOn this page
Also known as KIAA0442FBRSL2
Summary
AUTS2 (activator of transcription and developmental regulator AUTS2, HGNC:14262) is a protein-coding gene on chromosome 7q11.22, encoding Autism susceptibility gene 2 protein (Q8WXX7). Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. It is haploinsufficient (ClinGen: sufficient evidence).
This gene has been implicated in neurodevelopment and as a candidate gene for numerous neurological disorders, including autism spectrum disorders, intellectual disability, and developmental delay. Mutations in this gene have also been associated with non-neurological disorders, such as acute lymphoblastic leukemia, aging of the skin, early-onset androgenetic alopecia, and certain cancers. Alternative splicing results in multiple transcript variants encoding different isoforms.
Source: NCBI Gene 26053 — RefSeq curated summary.
At a glance
- Gene–disease (curated): syndromic intellectual disability (Definitive, ClinGen) — +1 more curated relationship
- GWAS associations: 57
- Clinical variants (ClinVar): 1,416 total — 114 pathogenic, 48 likely-pathogenic
- Phenotypes (HPO): 70
- Dosage sensitivity (ClinGen): haploinsufficiency sufficient evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_015570
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:14262 |
| Approved symbol | AUTS2 |
| Name | activator of transcription and developmental regulator AUTS2 |
| Location | 7q11.22 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA0442, FBRSL2 |
| Ensembl gene | ENSG00000158321 |
| Ensembl biotype | protein_coding |
| OMIM | 607270 |
| Entrez | 26053 |
Gene structure
Transcript identifiers
Ensembl transcripts: 34 — 16 protein_coding, 10 retained_intron, 4 protein_coding_CDS_not_defined, 4 nonsense_mediated_decay
ENST00000342771, ENST00000403018, ENST00000406775, ENST00000416482, ENST00000418686, ENST00000439256, ENST00000443672, ENST00000449547, ENST00000464768, ENST00000465899, ENST00000475660, ENST00000476695, ENST00000481994, ENST00000483297, ENST00000489774, ENST00000498384, ENST00000611706, ENST00000615871, ENST00000643060, ENST00000643587, ENST00000643936, ENST00000644359, ENST00000644506, ENST00000644939, ENST00000644949, ENST00000646136, ENST00000646193, ENST00000647121, ENST00000647140, ENST00000656200, ENST00000656998, ENST00000659051, ENST00000664521, ENST00000700075
RefSeq mRNA: 3 — MANE Select: NM_015570
NM_001127231, NM_001127232, NM_015570
CCDS: CCDS47601, CCDS47602, CCDS5539
Canonical transcript exons
ENST00000342771 — 19 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001038369 | 70787209 | 70787431 |
| ENSE00001090863 | 70762870 | 70763341 |
| ENSE00001311771 | 70764752 | 70765005 |
| ENSE00001316169 | 70698569 | 70698620 |
| ENSE00001326469 | 70435752 | 70435781 |
| ENSE00001662974 | 69598475 | 69599962 |
| ENSE00003467264 | 70785955 | 70786038 |
| ENSE00003478060 | 70774028 | 70774099 |
| ENSE00003495311 | 70781615 | 70781756 |
| ENSE00003501395 | 70118132 | 70118233 |
| ENSE00003537068 | 70784942 | 70785019 |
| ENSE00003549352 | 70134536 | 70134571 |
| ENSE00003555910 | 70771549 | 70771644 |
| ENSE00003580330 | 70775357 | 70775386 |
| ENSE00003605416 | 69899286 | 69899498 |
| ENSE00003615995 | 70766114 | 70766334 |
| ENSE00003619473 | 70777103 | 70777174 |
| ENSE00003621527 | 70768024 | 70768068 |
| ENSE00003830314 | 70789748 | 70793506 |
Expression profiles
Bgee: expression breadth ubiquitous, 292 present calls, max score 99.22.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 30.4732 / max 635.2414, expressed in 1508 samples.
FANTOM5 promoters (33 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 78963 | 13.2388 | 1325 |
| 78923 | 2.2649 | 761 |
| 78965 | 2.1616 | 847 |
| 78924 | 2.1571 | 757 |
| 78926 | 1.8071 | 620 |
| 78959 | 1.0327 | 243 |
| 78970 | 1.0295 | 435 |
| 78922 | 0.8813 | 412 |
| 78976 | 0.6932 | 297 |
| 78925 | 0.5763 | 308 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cortical plate | UBERON:0005343 | 99.22 | gold quality |
| tibia | UBERON:0000979 | 98.88 | gold quality |
| ganglionic eminence | UBERON:0004023 | 98.44 | gold quality |
| bronchial epithelial cell | CL:0002328 | 98.20 | gold quality |
| sural nerve | UBERON:0015488 | 98.10 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 98.01 | gold quality |
| bronchus | UBERON:0002185 | 97.91 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 97.73 | gold quality |
| parotid gland | UBERON:0001831 | 97.64 | gold quality |
| embryo | UBERON:0000922 | 97.24 | gold quality |
| mammary duct | UBERON:0001765 | 96.90 | gold quality |
| dorsal motor nucleus of vagus nerve | UBERON:0002870 | 96.89 | gold quality |
| epithelium of mammary gland | UBERON:0003244 | 96.67 | gold quality |
| upper leg skin | UBERON:0004262 | 96.41 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 95.71 | gold quality |
| cartilage tissue | UBERON:0002418 | 95.67 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 95.40 | gold quality |
| skin of hip | UBERON:0001554 | 95.27 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 95.07 | gold quality |
| renal medulla | UBERON:0000362 | 94.92 | gold quality |
| trachea | UBERON:0003126 | 94.83 | gold quality |
| calcaneal tendon | UBERON:0003701 | 94.81 | gold quality |
| colonic epithelium | UBERON:0000397 | 94.79 | gold quality |
| thoracic mammary gland | UBERON:0005200 | 94.78 | gold quality |
| mammary gland | UBERON:0001911 | 94.76 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 94.71 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 94.62 | gold quality |
| lower lobe of lung | UBERON:0008949 | 94.53 | gold quality |
| synovial joint | UBERON:0002217 | 94.45 | gold quality |
| adrenal tissue | UBERON:0018303 | 94.36 | gold quality |
Single-cell (SCXA)
Detected in 6 experiment(s), a significant marker in 4.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-5 | yes | 58.62 |
| E-MTAB-6678 | yes | 24.72 |
| E-CURD-119 | yes | 24.15 |
| E-ANND-3 | yes | 15.34 |
| E-ANND-2 | no | 2101.54 |
| E-MTAB-6379 | no | 88.10 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): FOXP2, TBR1
miRNA regulators (miRDB)
186 targeting AUTS2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-6740-5P | 100.00 | 65.64 | 932 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-513B-5P | 99.99 | 69.96 | 2150 |
| HSA-MIR-485-3P | 99.98 | 70.68 | 1585 |
| HSA-MIR-539-3P | 99.98 | 70.74 | 1616 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-507 | 99.97 | 70.11 | 1915 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-557 | 99.96 | 70.01 | 1640 |
| HSA-MIR-9-3P | 99.96 | 70.88 | 2068 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-4666A-3P | 99.96 | 71.71 | 3434 |
Functional genomics
ClinGen dosage: haploinsufficiency 3 (sufficient evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 38)
- A de novo balanced translocation breakpoint truncating the autism susceptibility candidate 2 gene is associated with autism. (PMID:20635338)
- SNP rs6943555 in autism susceptibility candidate 2 gene (AUTS2) was associated with alcohol consumption at genome-wide significance (P = 4 x 10(-8) to P = 4 x 10(-9)). (PMID:21471458)
- PAX5-AUTS2: a recurrent fusion gene in childhood B-cell precursor acute lymphoblastic leukemia. (PMID:22578776)
- the role of AUTS2 in normal neurological development and its altered expression may result in a variety of neurobehavioral phenotypes (PMID:22872102)
- This study indicates that there might be a genetic association of AUTS2 with susceptibility to heroin dependence. Reduced gene expression of AUTS2 in lymphoblastoid cell lines may increase the risk for heroin dependence. (PMID:22995765)
- These observations demonstrate a causal role of AUTS2 in neurocognitive disorders. (PMID:23332918)
- our results show that AUTS2 is important for neurodevelopment and expose candidate enhancer sequences in which nucleotide variation could lead to neurological disease and human-specific traits. (PMID:23349641)
- AUTS2 rs6943555 A allele is associated with suicide committed after drinking ethanol shortly before death. (PMID:23437340)
- AUTS2, its discovery, expression, association with autism and other neurological and non-neurological traits, implication in human evolution, function, regulation, and genetic pathways, are reviewed. (PMID:24008202)
- This is one of the smallest de novo intragenic deletions of AUTS2. (PMID:24459036)
- AUTS2 mutations are associated with autism spectrum disorder. (PMID:24859339)
- similarities between the phenotypes of 2 male patients with AUTS2 variants support that AUTS2 syndrome is a single gene disorder. (PMID:25205402)
- polymorphism rs6943555 might elucidate the pathogenesis of schizophrenia and play an important role in its etiology (PMID:25347278)
- AA homozygotes of rs6943555 were significantly over-represented in the patients with heroin dependence. (PMID:25398668)
- the CK2 component of PRC1-AUTS2 neutralizes PRC1 repressive activity, whereas AUTS2-mediated recruitment of P300 leads to gene activation. (PMID:25519132)
- In summary, our results indicate that AUTS2 is a candidate biomarker for defining liver metastasis of pancreatic cancer and directing personalized therapies. (PMID:25962312)
- The AUTS2 gene has been repeatedly implicated in neurodevelopmental disorders including autism, intellectual disability and developmental delay. (PMID:26348319)
- Exonic deletions of AUTS2 is associated with developmental delay and intellectual disability. (PMID:26545289)
- Heterozygous Disruption of Autism susceptibility candidate 2 Causes Impaired Emotional Control and Cognitive Memory (PMID:26717414)
- Results showed the frequencies of the AUTS2 haplotypes significantly different between them, and the rs6943555 and rs9886351 A-A haplotype was associated with alcohol dependence in a Japanese population. (PMID:26763194)
- AUTS2 syndrome emerges as a specific ID syndrome with microcephaly. (PMID:27075013)
- chromatin complexes PRC1/AUTS2 and PRC2 in a gene network in T-ALL regulating early lymphoid differentiation. (PMID:27322685)
- This clinical report provides the natural history in the eldest patient yet to be reported, and complements the existing evidence suggesting that disruption of the AUTS2 leads to a recently delineated neurodevelopmental phenotype with a wide spectrum, namely “AUTS2 Syndrome.” (PMID:27531620)
- This study demonstrated that Cocaine-Induced Chromatin Modifications Associate With Increased Expression and Three-Dimensional Looping of Auts2. (PMID:28577753)
- BCL7A, BRWD3, and AUTS2 demonstrate significantly higher mutation frequencies among AA cases. These genes are all involved in translocations in B-cell malignancies. Moreover, we detected a significant difference in mutation frequency of TP53 and IRF4 with frequencies higher among CA cases. Our study provides rationale for interrogating diverse tumor cohorts to best understand tumor genomics across populations. (PMID:29166413)
- significant intergenic synergistic effect between rs16879552 (NRG1) and rs7785360 (AUTS2) was identified through cross-validation. (PMID:29377512)
- These co-occurring hits involved known disease-associated genes such as SETD5, AUTS2, and NRXN1, and were enriched for cellular and developmental processes. Accurate genetic diagnosis of complex disorders will require complete evaluation of the genetic background even after a candidate disease-associated variant is identified (PMID:30190612)
- The intragenic exon rearrangements (IERs) involved in SOBP (6q21) exon 2 and 3 and AUTS2 (7q11.22) exon 2-4 were the molecular lesions specific to tumors and were frequently detected in non-Hodgkin B cell lymphoma (B-NHL) samples. These IERs constitute novel genetic alterations of B-NHL, which might be associated with tumorigenesis and be useful as genetic biological markers. (PMID:31686349)
- Effect of AUTS2 gene rs6943555 variant in male patients with schizophrenia in a Turkish population. (PMID:32574757)
- Whole Exome Sequencing Reveals a Novel AUTS2 In-Frame Deletion in a Boy with Global Developmental Delay, Absent Speech, Dysmorphic Features, and Cerebral Anomalies. (PMID:33562463)
- Germ cell mosaicism for AUTS2 exon 6 deletion. (PMID:33577136)
- Attention Deficit Hyperactivity and Autism Spectrum Disorders as the Core Symptoms of AUTS2 Syndrome: Description of Five New Patients and Update of the Frequency of Manifestations and Genotype-Phenotype Correlation. (PMID:34573342)
- NRF1 association with AUTS2-Polycomb mediates specific gene activation in the brain. (PMID:34637754)
- Highly diverse phenotypes of mucopolysaccharidosis type IIIB sibling patients: effects of an additional mutation in the AUTS2 gene. (PMID:35525889)
- Cerebral organoids containing an AUTS2 missense variant model microcephaly. (PMID:35802027)
- Structural polymorphism driven by a register shift in a CGAG-rich region found in the promoter of the neurodevelopmental regulator AUTS2 gene. (PMID:36864756)
- Isolated loss of the AUTS2 long isoform, brain-wide or targeted to Calbindin-lineage cells, generates a specific suite of brain, behavioral, and molecular pathologies. (PMID:37816306)
- AUTS2 disruption causes neuronal differentiation defects in human cerebral organoids through hyperactivation of the WNT/beta-catenin pathway. (PMID:39174599)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | auts2a | ENSDARG00000056427 |
| mus_musculus | Auts2 | ENSMUSG00000029673 |
| rattus_norvegicus | Auts2 | ENSRNOG00000000885 |
Paralogs (2): FBRSL1 (ENSG00000112787), FBRS (ENSG00000156860)
Protein
Protein identifiers
Autism susceptibility gene 2 protein — Q8WXX7 (reviewed: Q8WXX7)
All UniProt accessions (18): A0A024RDL5, A0A087WVB5, A0A2R8Y516, A0A2R8Y522, A0A2R8Y568, A0A2R8Y6Q9, A0A2R8Y8C6, A0A2R8YEX6, A0A590UJA2, A0A590UJP3, A0A590UK55, A0A590UKA2, A0A8V8TPM5, Q8WXX7, H7C090, H7C1G5, H7C2P0, Q75MD7
UniProt curated annotations — full annotation on UniProt →
Function. Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A ‘Lys-119’, rendering chromatin heritably changed in its expressibility. The PRC1-like complex that contains PCGF5, RNF2, CSNK2B, RYBP and AUTS2 has decreased histone H2A ubiquitination activity, due to the phosphorylation of RNF2 by CSNK2B. As a consequence, the complex mediates transcriptional activation. In the cytoplasm, plays a role in axon and dendrite elongation and in neuronal migration during embryonic brain development. Promotes reorganization of the actin cytoskeleton, lamellipodia formation and neurite elongation via its interaction with RAC guanine nucleotide exchange factors, which then leads to the activation of RAC1.
Subunit / interactions. Component of a PRC1-like complex that contains PCGF5, RNF2, CSNK2B, RYBP and AUTS2. Within this complex, interacts directly with PCGF5 and CSNK2B. Interacts with the histone acetyltransferase EP300/p300. Interacts (via Pro-rich region) with PREX1, DOCK1 and ELMO2.
Subcellular location. Nucleus. Cytoplasm. Cytoskeleton. Cell projection. Growth cone.
Tissue specificity. Strongly expressed in brain, skeletal muscle and kidney. Also expressed in placenta, lung and leukocytes.
Disease relevance. Intellectual developmental disorder, autosomal dominant 26 (MRD26) [MIM:615834] A disorder characterized by significantly below average general intellectual functioning associated with impairments in adaptive behavior and manifested during the developmental period. Additional MRD26 features include autism, short stature, microcephaly, cerebral palsy, and facial dysmorphisms. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. The Pro-rich region is important for the interaction with RAC guanine nucleotide exchange factors and the subsequent activation of RAC1, which then promotes lamellipodia formation.
Similarity. Belongs to the AUTS2 family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8WXX7-1 | 1 | yes |
| Q8WXX7-2 | 2 | |
| Q8WXX7-3 | 3 | |
| Q8WXX7-5 | 5 |
RefSeq proteins (3): NP_001120703, NP_001120704, NP_056385* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR023246 | AUTS2 | Family |
Pfam: PF15336
UniProt features (33 total): compositionally biased region 17, region of interest 7, splice variant 4, modified residue 2, chain 1, sequence variant 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8WXX7-F1 | 41.89 | 0.00 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (2): 1198, 1233
Function
Pathways and Gene Ontology
Reactome pathways
5 pathways
| ID | Pathway |
|---|---|
| R-HSA-8939243 | RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known |
| R-HSA-212436 | Generic Transcription Pathway |
| R-HSA-73857 | RNA Polymerase II Transcription |
| R-HSA-74160 | Gene expression (Transcription) |
| R-HSA-8878171 | Transcriptional regulation by RUNX1 |
MSigDB gene sets: 483 (showing top):
BEGUM_TARGETS_OF_PAX3_FOXO1_FUSION_UP, GOBP_NEURON_PROJECTION_EXTENSION, PEREZ_TP63_TARGETS, GCANCTGNY_MYOD_Q6, KAAB_HEART_ATRIUM_VS_VENTRICLE_UP, GOBP_GROWTH, GOBP_REGULATION_OF_SMALL_GTPASE_MEDIATED_SIGNAL_TRANSDUCTION, GOBP_NEUROGENESIS, CTATGCA_MIR153, BROWNE_HCMV_INFECTION_12HR_UP, GOBP_REGULATION_OF_CELLULAR_COMPONENT_BIOGENESIS, GGGTGGRR_PAX4_03, GOBP_REGULATION_OF_LAMELLIPODIUM_ASSEMBLY, RODWELL_AGING_KIDNEY_NO_BLOOD_DN, AGCGCTT_MIR518F_MIR518E_MIR518A
GO Biological Process (7): neuron migration (GO:0001764), positive regulation of lamellipodium assembly (GO:0010592), actin cytoskeleton organization (GO:0030036), positive regulation of Rac protein signal transduction (GO:0035022), positive regulation of transcription by RNA polymerase II (GO:0045944), axon extension (GO:0048675), dendrite extension (GO:0097484)
GO Molecular Function (2): chromatin binding (GO:0003682), protein binding (GO:0005515)
GO Cellular Component (6): nucleus (GO:0005634), cytoskeleton (GO:0005856), growth cone (GO:0030426), cytoplasm (GO:0005737), actin cytoskeleton (GO:0015629), cell projection (GO:0042995)
Reactome top-level categories
Rollup of top-4 pathways:
| Category | Pathways |
|---|---|
| Transcriptional regulation by RUNX1 | 1 |
| RNA Polymerase II Transcription | 1 |
| Gene expression (Transcription) | 1 |
| Generic Transcription Pathway | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| neuron projection extension | 2 |
| binding | 2 |
| cellular anatomical structure | 2 |
| cell migration | 1 |
| generation of neurons | 1 |
| regulation of lamellipodium assembly | 1 |
| lamellipodium assembly | 1 |
| positive regulation of plasma membrane bounded cell projection assembly | 1 |
| positive regulation of lamellipodium organization | 1 |
| cytoskeleton organization | 1 |
| actin filament-based process | 1 |
| Rac protein signal transduction | 1 |
| regulation of Rac protein signal transduction | 1 |
| positive regulation of small GTPase mediated signal transduction | 1 |
| regulation of transcription by RNA polymerase II | 1 |
| transcription by RNA polymerase II | 1 |
| positive regulation of DNA-templated transcription | 1 |
| axonogenesis | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular membraneless organelle | 1 |
| site of polarized growth | 1 |
| distal axon | 1 |
| intracellular anatomical structure | 1 |
| cytoskeleton | 1 |
Protein interactions and networks
STRING
1542 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| AUTS2 | CADPS2 | Q86UW7 | 871 |
| AUTS2 | CNTNAP2 | Q9UHC6 | 828 |
| AUTS2 | NRG3 | P56975 | 825 |
| AUTS2 | PCGF5 | Q86SE9 | 812 |
| AUTS2 | DYRK1A | Q13627 | 788 |
| AUTS2 | NRXN1 | Q9ULB1 | 740 |
| AUTS2 | PCGF3 | Q3KNV8 | 736 |
| AUTS2 | SHANK3 | Q9BYB0 | 728 |
| AUTS2 | SHANK2 | Q9UPX8 | 678 |
| AUTS2 | CALN1 | Q9BXU9 | 647 |
| AUTS2 | NLGN3 | Q9NZ94 | 645 |
| AUTS2 | NLGN4X | Q8N0W4 | 629 |
| AUTS2 | YAF2 | Q8IY57 | 626 |
| AUTS2 | CHD8 | Q9HCK8 | 619 |
| AUTS2 | PCGF1 | Q9BSM1 | 612 |
IntAct
59 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CSNK2A1 | CSNK2A2 | psi-mi:“MI:0914”(association) | 0.920 |
| RNF2 | PCGF5 | psi-mi:“MI:0914”(association) | 0.890 |
| PCGF5 | CSNK2A2 | psi-mi:“MI:0914”(association) | 0.880 |
| RYBP | BMI1 | psi-mi:“MI:0914”(association) | 0.850 |
| CSNK2A1 | EIF3J | psi-mi:“MI:0914”(association) | 0.810 |
| AUTS2 | PCGF5 | psi-mi:“MI:0915”(physical association) | 0.790 |
| AUTS2 | PCGF5 | psi-mi:“MI:0914”(association) | 0.790 |
| PCGF5 | AUTS2 | psi-mi:“MI:0914”(association) | 0.790 |
| CSNK2A2 | EIF3J | psi-mi:“MI:0914”(association) | 0.790 |
| AUTS2 | CSNK2B | psi-mi:“MI:0914”(association) | 0.760 |
| AUTS2 | RNF2 | psi-mi:“MI:0915”(physical association) | 0.740 |
| RYBP | E2F6 | psi-mi:“MI:0914”(association) | 0.740 |
| DCAF7 | DIAPH1 | psi-mi:“MI:0914”(association) | 0.730 |
| RING1 | CBX4 | psi-mi:“MI:0914”(association) | 0.730 |
| AUTS2 | EP300 | psi-mi:“MI:0915”(physical association) | 0.680 |
| AUTS2 | EP300 | psi-mi:“MI:0914”(association) | 0.680 |
| CSNK2B | NMT2 | psi-mi:“MI:0914”(association) | 0.660 |
| RNF2 | CBX4 | psi-mi:“MI:0914”(association) | 0.660 |
| PCGF6 | CBX4 | psi-mi:“MI:0914”(association) | 0.640 |
| YAF2 | E2F6 | psi-mi:“MI:0914”(association) | 0.640 |
BioGRID (99): AUTS2 (Affinity Capture-MS), AUTS2 (Affinity Capture-MS), AUTS2 (Affinity Capture-MS), PCGF5 (Affinity Capture-MS), RING1 (Affinity Capture-MS), RNF2 (Affinity Capture-MS), RYBP (Affinity Capture-MS), YAF2 (Affinity Capture-MS), CSNK2A1 (Affinity Capture-MS), CSNK2A2 (Affinity Capture-MS), CSNK2B (Affinity Capture-MS), DCAF7 (Affinity Capture-MS), FBRS (Affinity Capture-MS), PCGF3 (Affinity Capture-MS), EP300 (Affinity Capture-MS)
ESM2 similar proteins: A0A087WPF7, A0A0R4IBL7, O09000, O54972, O70305, O75081, O75376, P15806, P15881, P15884, P15923, P21677, P30985, P51514, P98180, Q05AQ8, Q14157, Q14687, Q1LY51, Q2VPM4, Q3U3C9, Q4KKX4, Q4VCS5, Q566L4, Q5F3B1, Q5SFM8, Q5T6F2, Q60722, Q60974, Q61286, Q62655, Q6DIH5, Q7ZWN6, Q7ZXS3, Q80X50, Q86YP4, Q8BZ47, Q8CHY6, Q8IXK0, Q8VHG2
Diamond homologs: A0A087WPF7, Q8R089, Q8WXX7, Q9HAH7, Q9HCM7
SIGNOR signaling
8 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| AUTS2 | “down-regulates activity” | “Polycomb repressive complex 1” | binding |
| AUTS2 | up-regulates | Neuron_migration | |
| AUTS2 | up-regulates | Neurite_outgrowth | |
| FOXP2 | “up-regulates quantity by expression” | AUTS2 | “transcriptional regulation” |
| AUTS2 | “up-regulates activity” | PREX1 | binding |
| AUTS2 | “up-regulates activity” | ELMO2 | binding |
| AUTS2 | “up-regulates activity” | DOCK1 | binding |
| TBR1 | “up-regulates quantity by expression” | AUTS2 | “transcriptional regulation” |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 42 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known | 11 | 94.5× | 8e-18 |
| Transcriptional Regulation by E2F6 | 7 | 58.6× | 2e-09 |
| SUMOylation of transcription cofactors | 5 | 34.7× | 1e-05 |
| SUMOylation of RNA binding proteins | 5 | 34.0× | 1e-05 |
| Differentiation of naive CD4+ T cells to T helper 2 cells (Th2 cells) | 5 | 20.9× | 9e-05 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| negative regulation of proteasomal ubiquitin-dependent protein catabolic process | 5 | 50.1× | 1e-05 |
| chromatin remodeling | 6 | 10.9× | 1e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
1416 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 114 |
| Likely pathogenic | 48 |
| Uncertain significance | 604 |
| Likely benign | 359 |
| Benign | 146 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1033782 | NM_015570.4(AUTS2):c.2T>C (p.Met1Thr) | Pathogenic |
| 1072549 | NC_000007.13:g.(?70227856)(70242160_?)del | Pathogenic |
| 1174542 | NM_015570.4(AUTS2):c.1A>T (p.Met1Leu) | Pathogenic |
| 1194595 | NM_015570.4(AUTS2):c.2392C>T (p.Arg798Ter) | Pathogenic |
| 1307520 | NM_015570.4(AUTS2):c.1610A>C (p.His537Pro) | Pathogenic |
| 1310114 | NM_015570.4(AUTS2):c.1588_1611del (p.Gln530_His537del) | Pathogenic |
| 1324010 | NM_015570.4(AUTS2):c.479_487delinsC (p.Gln160fs) | Pathogenic |
| 1325825 | NM_015570.4:c.(690+1_691-1)_(742+1_743-1)del | Pathogenic |
| 133343 | NC_000007.14:g.(69899499_70118132)_(70134571_70435751)del | Pathogenic |
| 133344 | NC_000007.14:g.(70435782_70698569)_(70766334_70768023)del | Pathogenic |
| 1334416 | NM_015570.4(AUTS2):c.1995_1996del (p.Lys666fs) | Pathogenic |
| 1335669 | NM_015570.4(AUTS2):c.1904_1907dup (p.Pro638fs) | Pathogenic |
| 144722 | GRCh38/hg38 7q11.22(chr7:69865751-70055580)x1 | Pathogenic |
| 144764 | GRCh38/hg38 7q11.22(chr7:69000832-70244446)x1 | Pathogenic |
| 144927 | GRCh38/hg38 7q11.22(chr7:69828711-70038445)x1 | Pathogenic |
| 144933 | GRCh38/hg38 7q11.22(chr7:69588764-69765039)x1 | Pathogenic |
| 145611 | GRCh38/hg38 7q11.22(chr7:70792749-72444391)x1 | Pathogenic |
| 1456517 | NC_000007.13:g.(?69092299)(70193818_?)del | Pathogenic |
| 1457603 | NM_015570.4(AUTS2):c.2008C>T (p.Gln670Ter) | Pathogenic |
| 148274 | GRCh38/hg38 7q11.22(chr7:69665251-70271848)x1 | Pathogenic |
| 149086 | GRCh38/hg38 7q11.22(chr7:70206515-70493590)x1 | Pathogenic |
| 149942 | GRCh38/hg38 7q11.22(chr7:70724914-70755760)x1 | Pathogenic |
| 1527360 | GRCh37/hg19 7q11.22(chr7:69145364-70023881) | Pathogenic |
| 1527361 | GRCh37/hg19 7q11.22(chr7:69250058-71604236) | Pathogenic |
| 1527362 | GRCh37/hg19 7q11.22(chr7:69325515-69644230) | Pathogenic |
| 1527363 | GRCh37/hg19 7q11.22(chr7:69459746-70176827) | Pathogenic |
| 1527364 | GRCh37/hg19 7q11.22(chr7:69527664-69647986) | Pathogenic |
| 1527875 | NM_015570.4(AUTS2):c.1913del (p.Pro638fs) | Pathogenic |
| 155372 | GRCh38/hg38 7q11.22(chr7:70300438-70447453)x1 | Pathogenic |
| 1708260 | NM_015570.4(AUTS2):c.2218del (p.His740fs) | Pathogenic |
SpliceAI
12404 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:69599961:AGGTA:A | donor_loss | 1.0000 |
| 7:69599962:GGT:G | donor_loss | 1.0000 |
| 7:69599963:GT:G | donor_loss | 1.0000 |
| 7:69599964:T:G | donor_loss | 1.0000 |
| 7:69797076:A:AG | acceptor_gain | 1.0000 |
| 7:69899282:A:AG | acceptor_gain | 1.0000 |
| 7:69899283:C:G | acceptor_gain | 1.0000 |
| 7:69899283:CA:C | acceptor_loss | 1.0000 |
| 7:69899284:A:AG | acceptor_gain | 1.0000 |
| 7:69899285:G:GA | acceptor_gain | 1.0000 |
| 7:69899285:GA:G | acceptor_gain | 1.0000 |
| 7:69899285:GAA:G | acceptor_gain | 1.0000 |
| 7:69899285:GAAA:G | acceptor_gain | 1.0000 |
| 7:69899494:GACAG:G | donor_gain | 1.0000 |
| 7:69899495:ACAGG:A | donor_loss | 1.0000 |
| 7:69899496:CAGG:C | donor_loss | 1.0000 |
| 7:69899497:AGGT:A | donor_loss | 1.0000 |
| 7:69899498:GGTGA:G | donor_loss | 1.0000 |
| 7:69899499:G:GA | donor_loss | 1.0000 |
| 7:69899500:T:G | donor_loss | 1.0000 |
| 7:69899504:G:GT | donor_gain | 1.0000 |
| 7:70118127:TTTA:T | acceptor_loss | 1.0000 |
| 7:70118130:A:AG | acceptor_gain | 1.0000 |
| 7:70118130:A:C | acceptor_loss | 1.0000 |
| 7:70118131:G:GC | acceptor_gain | 1.0000 |
| 7:70118131:GCTC:G | acceptor_gain | 1.0000 |
| 7:70118131:GCTCA:G | acceptor_gain | 1.0000 |
| 7:70118220:A:T | donor_gain | 1.0000 |
| 7:70118229:GTGAT:G | donor_gain | 1.0000 |
| 7:70118231:GAT:G | donor_gain | 1.0000 |
AlphaMissense
8244 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:69599925:T:C | F91S | 1.000 |
| 7:70766138:T:A | L498Q | 1.000 |
| 7:70766138:T:C | L498P | 1.000 |
| 7:70766149:T:C | F502L | 1.000 |
| 7:70766150:T:C | F502S | 1.000 |
| 7:70766150:T:G | F502C | 1.000 |
| 7:70766151:T:A | F502L | 1.000 |
| 7:70766151:T:G | F502L | 1.000 |
| 7:70766218:C:G | H525D | 1.000 |
| 7:70766224:C:G | H527D | 1.000 |
| 7:70766230:C:G | H529D | 1.000 |
| 7:70766236:C:G | H531D | 1.000 |
| 7:70766248:C:G | H535D | 1.000 |
| 7:70766260:C:G | H539D | 1.000 |
| 7:70771627:G:A | G605R | 1.000 |
| 7:70771627:G:C | G605R | 1.000 |
| 7:70771633:T:C | F607L | 1.000 |
| 7:70771634:T:C | F607S | 1.000 |
| 7:70771634:T:G | F607C | 1.000 |
| 7:70771635:T:A | F607L | 1.000 |
| 7:70771635:T:G | F607L | 1.000 |
| 7:70777109:G:A | G647R | 1.000 |
| 7:70777109:G:C | G647R | 1.000 |
| 7:70777109:G:T | G647W | 1.000 |
| 7:70777110:G:A | G647E | 1.000 |
| 7:70777115:T:A | W649R | 1.000 |
| 7:70777115:T:C | W649R | 1.000 |
| 7:70777116:G:C | W649S | 1.000 |
| 7:70777117:G:C | W649C | 1.000 |
| 7:70777117:G:T | W649C | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000005152 (7:70391221 T>C), RS1000005882 (7:70021596 A>G), RS1000006364 (7:70422229 A>G,T), RS1000010270 (7:69886219 A>G), RS1000011510 (7:70065347 A>G), RS1000011913 (7:70384481 C>T), RS1000013335 (7:69614220 A>G), RS1000019026 (7:70727910 T>C), RS1000021958 (7:69689934 C>G,T), RS1000025245 (7:70208774 A>T), RS1000025887 (7:70505149 T>C), RS1000028332 (7:69742028 T>C), RS1000028409 (7:70108520 A>G), RS1000035434 (7:70297669 C>T), RS1000036076 (7:70765645 C>T)
Disease associations
OMIM: gene MIM:607270 | disease phenotypes: MIM:615834, MIM:209850, MIM:608636, MIM:618050, MIM:213000, MIM:217990
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| syndromic intellectual disability | Definitive | Autosomal dominant |
| autism spectrum disorder due to AUTS2 deficiency | Definitive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| syndromic intellectual disability | Definitive | AD |
Mondo (12): autism spectrum disorder due to AUTS2 deficiency (MONDO:0014361), intellectual disability (MONDO:0001071), multiple congenital anomalies/dysmorphic syndrome-intellectual disability (MONDO:0015159), breast ductal adenocarcinoma (MONDO:0005590), autism spectrum disorder (MONDO:0005258), syndromic intellectual disability (MONDO:0000508), autism (MONDO:0005260), 15q11q13 microduplication syndrome (MONDO:0012081), intellectual disability, autosomal dominant 57 (MONDO:0054837), isolated cerebellar hypoplasia/agenesis (MONDO:0008939), corpus callosum, agenesis of (MONDO:0009022), microcephaly (MONDO:0001149)
Orphanet (9): Autism spectrum disorder due to AUTS2 deficiency (Orphanet:352490), Multiple congenital anomalies/dysmorphic syndrome-intellectual disability (Orphanet:102283), Rare genetic syndromic intellectual disability (Orphanet:183763), 15q11q13 microduplication syndrome (Orphanet:238446), Isolated cerebellar agenesis (Orphanet:1398), Isolated corpus callosum agenesis (Orphanet:200), Cerebellar hypoplasia-tapetoretinal degeneration syndrome (Orphanet:2246), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658), NON RARE IN EUROPE: Autism (Orphanet:106)
HPO phenotypes
70 total (30 of 70 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000023 | Inguinal hernia |
| HP:0000028 | Cryptorchidism |
| HP:0000154 | Wide mouth |
| HP:0000160 | Narrow mouth |
| HP:0000248 | Brachycephaly |
| HP:0000252 | Microcephaly |
| HP:0000278 | Retrognathia |
| HP:0000286 | Epicanthus |
| HP:0000316 | Hypertelorism |
| HP:0000322 | Short philtrum |
| HP:0000347 | Micrognathia |
| HP:0000369 | Low-set ears |
| HP:0000431 | Wide nasal bridge |
| HP:0000463 | Anteverted nares |
| HP:0000486 | Strabismus |
| HP:0000494 | Downslanted palpebral fissures |
| HP:0000508 | Ptosis |
| HP:0000520 | Proptosis |
| HP:0000574 | Thick eyebrow |
| HP:0000582 | Upslanted palpebral fissure |
| HP:0000722 | Compulsive behaviors |
| HP:0000729 | Autistic behavior |
| HP:0000733 | Motor stereotypy |
| HP:0000750 | Delayed speech and language development |
| HP:0000752 | Hyperactivity |
| HP:0000964 | Eczematoid dermatitis |
| HP:0001249 | Intellectual disability |
| HP:0001250 | Seizure |
| HP:0001257 | Spasticity |
GWAS associations
57 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001029_1 | Alcohol consumption | 4.000000e-08 |
| GCST001535_3 | Immune reponse to smallpox (secreted IL-2) | 2.000000e-08 |
| GCST001548_4 | Male-pattern baldness | 2.000000e-09 |
| GCST001647_5 | Bipolar disorder | 5.000000e-06 |
| GCST001762_718 | Obesity-related traits | 4.000000e-07 |
| GCST002337_41 | Amyotrophic lateral sclerosis (sporadic) | 6.000000e-07 |
| GCST002759_25 | Motion sickness | 2.000000e-09 |
| GCST002759_4 | Motion sickness | 5.000000e-22 |
| GCST002783_111 | Body mass index | 6.000000e-06 |
| GCST003118_1 | Response to serotonin reuptake inhibitors in non-psychotic unipolar depression | 2.000000e-08 |
| GCST003901_13 | Cognitive decline (age-related) | 3.000000e-06 |
| GCST003983_6 | Male-pattern baldness | 2.000000e-26 |
| GCST003991_10 | Childhood ear infection | 4.000000e-09 |
| GCST003992_20 | Photic sneeze reflex | 1.000000e-08 |
| GCST003996_22 | Monobrow | 2.000000e-09 |
| GCST004863_96 | Mosquito bite size | 3.000000e-06 |
| GCST004904_36 | Body mass index | 4.000000e-12 |
| GCST004904_57 | Body mass index | 5.000000e-12 |
| GCST005013_20 | Childhood ear infection | 4.000000e-09 |
| GCST005116_7 | Male-pattern baldness | 2.000000e-41 |
| GCST005116_8 | Male-pattern baldness | 8.000000e-27 |
| GCST005171_49 | QT interval | 1.000000e-07 |
| GCST005830_129 | Hand grip strength | 9.000000e-10 |
| GCST005830_77 | Hand grip strength | 7.000000e-09 |
| GCST006269_716 | General cognitive ability | 2.000000e-09 |
| GCST006269_810 | General cognitive ability | 8.000000e-09 |
| GCST006630_10 | Diastolic blood pressure | 9.000000e-09 |
| GCST006661_171 | Male-pattern baldness | 5.000000e-11 |
| GCST006661_318 | Male-pattern baldness | 5.000000e-08 |
| GCST006661_319 | Male-pattern baldness | 5.000000e-08 |
EFO canonical traits (27, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004329 | alcohol drinking |
| EFO:0004645 | response to vaccine |
| EFO:0004873 | cytokine measurement |
| EFO:0005108 | arm span |
| EFO:0006928 | motion sickness |
| EFO:0004340 | body mass index |
| EFO:0005658 | response to selective serotonin reuptake inhibitor |
| EFO:0007904 | susceptibility to childhood ear infection measurement |
| EFO:0007887 | autosomal dominant compelling helio-ophthalmic outburst syndrome |
| EFO:0007906 | synophrys measurement |
| EFO:0008378 | mosquito bite reaction size measurement |
| EFO:0004682 | QT interval |
| EFO:0006941 | grip strength measurement |
| EFO:0004337 | intelligence |
| EFO:0006336 | diastolic blood pressure |
| EFO:0009594 | irritability measurement |
| EFO:0004763 | p-tau measurement |
| EFO:0008579 | risk-taking behaviour |
| EFO:0008328 | chronotype measurement |
| EFO:0006781 | coffee consumption measurement |
| EFO:0007778 | urinary albumin to creatinine ratio |
| EFO:0005670 | smoking initiation |
| EFO:0600027 | hemoglobin change measurement |
| EFO:0004980 | appendicular lean mass |
| EFO:0004587 | lymphocyte count |
| EFO:0004527 | mean corpuscular hemoglobin |
| EFO:0004305 | erythrocyte count |
MeSH disease descriptors (6)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D061085 | Agenesis of Corpus Callosum | C10.500.034; C16.131.666.034; C23.300.008 |
| D001321 | Autistic Disorder | F03.625.164.113.500 |
| D018270 | Carcinoma, Ductal, Breast | C04.557.470.200.025.232.500; C04.557.470.615.132.500; C04.588.180.390; C17.800.090.500.390 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D008831 | Microcephaly | C05.660.207.620; C10.500.507.400.500; C16.131.621.207.620; C16.131.666.507.400.500 |
| C562568 | Cerebellar Hypoplasia (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
57 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, decreases expression, increases expression, increases methylation | 5 |
| Tobacco Smoke Pollution | decreases expression, increases methylation | 3 |
| methylmercuric chloride | increases expression | 2 |
| bisphenol A | affects methylation, affects cotreatment, increases methylation, decreases expression | 2 |
| sodium arsenite | affects methylation, decreases expression | 2 |
| Benzo(a)pyrene | increases expression, increases methylation | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| Tretinoin | increases expression, decreases expression | 2 |
| 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide | decreases expression | 2 |
| Cadmium Chloride | decreases expression, increases abundance, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| trichostatin A | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| zinc chromate | decreases expression, increases abundance | 1 |
| tobacco tar | decreases expression | 1 |
| benzo(e)pyrene | affects methylation | 1 |
| nickel sulfate | increases expression | 1 |
| beta-methylcholine | affects expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| chromium hexavalent ion | decreases expression, increases abundance | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| candoxin | increases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| bisphenol S | decreases methylation | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Temozolomide | increases expression | 1 |
| Arsenic Trioxide | increases expression | 1 |
Cellosaurus cell lines
3 cell lines: 3 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_C9JK | SDQLCHi060-A | Induced pluripotent stem cell | Male |
| CVCL_D4ZV | SDQLCHi072-A | Induced pluripotent stem cell | Male |
| CVCL_XI75 | SDQLCHi008-A | Induced pluripotent stem cell | Male |
Clinical trials (associated diseases)
198 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT03862950 | PHASE2 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome (Met) |
| NCT04529226 | PHASE2 | UNKNOWN | Study to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis |
| NCT04821856 | PHASE2 | COMPLETED | Evaluation of the Effectiveness of Cannabidiol in Treating Severe Behavioural Problems in Children and Adolescents With Intellectual Disability |
| NCT05273320 | PHASE1 | COMPLETED | Clinical Trial of Nabilone for Aggression in Adults With Intellectual and Developmental Disabilities |
| NCT05301361 | PHASE1 | ENROLLING_BY_INVITATION | Sensitivity of the NIH Toolbox to Stimulant Treatment in Intellectual Disabilities |
| NCT06016764 | PHASE1 | COMPLETED | Use of MRI and cTBS for Catatonia in Autism |
| NCT06586827 | PHASE1 | COMPLETED | Impact of Competency-Based Training and Technical Assistance Employment Outcomes of Individuals With ID/DD |
| NCT07531940 | PHASE1 | NOT_YET_RECRUITING | Escalating Doses of Memantine in Down Syndrome (MEDS-123) |
| NCT01238250 | Not specified | RECRUITING | Online Study of People Who Have Genetic Changes and Features of Autism: Simons Searchlight |
| NCT03479476 | PHASE2/PHASE3 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome |
| NCT02616796 | PHASE1/PHASE2 | COMPLETED | Effects of Social Gaze Training on Brain and Behavior in Fragile X Syndrome |
| NCT06860672 | EARLY_PHASE1 | RECRUITING | Clinical Trial of the Dual Vector Base Editor for the Treatment of the CHD3-R1025W Mutation |
| NCT00597948 | Not specified | COMPLETED | Healthy Lifestyles for People With Intellectual Disabilities |
| NCT01087320 | Not specified | RECRUITING | Genome Medical Sequencing for Gene Discovery |
| NCT01652963 | Not specified | UNKNOWN | Picture-based Computerised Assessment and Training of Cognitive Behaviour Therapy Skills |
| NCT01695395 | Not specified | COMPLETED | Mental Health Care Provision for Adults With Intellectual Disability and a Mental Disorder |
| NCT01867554 | Not specified | COMPLETED | Research and Characterization of New Genes Involved in Intellectual Disability |
| NCT01915381 | Not specified | COMPLETED | Improving Adherence Healthy Lifestyle With a Smartphone Application Based on Adults With Intellectual Disabilities |
| NCT01988623 | Not specified | COMPLETED | Pivotal Response Treatment for Individuals With Intellectual Disabilities |
| NCT02099773 | Not specified | COMPLETED | Support Staff-client Interactions With Augmentative and Alternative Communication |
| NCT02136849 | Not specified | COMPLETED | Inter-regional Project of the Great Western Exploration Approach for Exome Molecular Causes Severe Intellectual Disability Isolated or Syndromic |
| NCT02225041 | Not specified | COMPLETED | Sedation Strategy and Cognitive Outcome After Critical Illness in Early Childhood |
| NCT02414438 | Not specified | COMPLETED | Establishing the Clinical Utility of First StepDx PLUS and NextStepDx PLUS Study |
| NCT02451761 | Not specified | COMPLETED | Apparently Balanced Chromosomal Translocation/ Next-generation Sequencing/ Intellectual Disability |
| NCT02461420 | Not specified | ACTIVE_NOT_RECRUITING | Mapping the Genotype, Phenotype, and Natural History of Phelan-McDermid Syndrome |
| NCT02461459 | Not specified | ACTIVE_NOT_RECRUITING | Autism Spectrum Disorder (ASD) and Intellectual Disability (ID) Determinants in Tuberous Sclerosis Complex (TSC) |
| NCT02486081 | Not specified | COMPLETED | Development and Application-Smart Football for Movement Evaluation and Training in the Special Education Population |
| NCT02504502 | Not specified | COMPLETED | Enhancing Genomic Laboratory Reports to Enhance Communication and Empower Patients |
| NCT02513277 | Not specified | COMPLETED | Diabetes Screening & Prevention for People With Learning (Intellectual) Disabilities:STOP Diabetes Study |
| NCT02561754 | Not specified | COMPLETED | Weight Management for Adolescents With IDD |
| NCT02591446 | Not specified | COMPLETED | Transcranial Magnetic Stimulation Studies in Autism Spectrum Disorders |
| NCT02714868 | Not specified | COMPLETED | Evaluation of Project TEAM (Teens Making Environmental and Activity Modifications) |
| NCT02721394 | Not specified | UNKNOWN | FCT With Young Children With ID in the UK: A Feasibility Project V.1 |
| NCT02746614 | Not specified | COMPLETED | Psychomotor Therapy Effects in Adaptive Behavior and Motor Proficiency in Intellectual Disability |
Related Atlas pages
- Associated diseases: syndromic intellectual disability, autism spectrum disorder due to AUTS2 deficiency
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): 15q11q13 microduplication syndrome, alopecia, androgenetic alopecia, autism, autism spectrum disorder due to AUTS2 deficiency, breast ductal adenocarcinoma, corpus callosum, agenesis of, intellectual disability, autosomal dominant 57, isolated cerebellar hypoplasia/agenesis, multiple congenital anomalies/dysmorphic syndrome-intellectual disability, noise induced hearing loss, sporadic amyotrophic lateral sclerosis, syndromic intellectual disability