AVEN
geneOn this page
Also known as PDCD12
Summary
AVEN (apoptosis and caspase activation inhibitor, HGNC:13509) is a protein-coding gene on chromosome 15q14, encoding Cell death regulator Aven (Q9NQS1). Protects against apoptosis mediated by Apaf-1.
Involved in negative regulation of apoptotic process. Located in membrane.
Source: NCBI Gene 57099 — RefSeq curated summary.
At a glance
- GWAS associations: 3
- Clinical variants (ClinVar): 290 total — 1 likely-pathogenic
- MANE Select transcript:
NM_020371
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:13509 |
| Approved symbol | AVEN |
| Name | apoptosis and caspase activation inhibitor |
| Location | 15q14 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | PDCD12 |
| Ensembl gene | ENSG00000169857 |
| Ensembl biotype | protein_coding |
| OMIM | 605265 |
| Entrez | 57099 |
Gene structure
Transcript identifiers
Ensembl transcripts: 6 — 3 protein_coding, 2 protein_coding_CDS_not_defined, 1 nonsense_mediated_decay
ENST00000306730, ENST00000558136, ENST00000560649, ENST00000675287, ENST00000964282, ENST00000964283
RefSeq mRNA: 1 — MANE Select: NM_020371
NM_020371
CCDS: CCDS10030
Canonical transcript exons
ENST00000306730 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001142566 | 33867495 | 33867855 |
| ENSE00001210306 | 34003032 | 34003209 |
| ENSE00001235819 | 33866227 | 33866728 |
| ENSE00001235829 | 34038780 | 34039204 |
| ENSE00003459236 | 33870935 | 33871030 |
| ENSE00003620677 | 33875925 | 33875995 |
Expression profiles
Bgee: expression breadth ubiquitous, 252 present calls, max score 91.25.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 17.8554 / max 275.0111, expressed in 1794 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 149221 | 17.8554 | 1794 |
Top tissues by expression
278 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| heart right ventricle | UBERON:0002080 | 91.25 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 91.18 | silver quality |
| ascending aorta | UBERON:0001496 | 89.67 | gold quality |
| gluteal muscle | UBERON:0002000 | 89.50 | gold quality |
| thoracic aorta | UBERON:0001515 | 89.48 | gold quality |
| heart left ventricle | UBERON:0002084 | 89.17 | gold quality |
| cardiac ventricle | UBERON:0002082 | 88.99 | gold quality |
| gastrocnemius | UBERON:0001388 | 88.73 | gold quality |
| apex of heart | UBERON:0002098 | 88.35 | gold quality |
| gingival epithelium | UBERON:0001949 | 88.15 | gold quality |
| muscle of leg | UBERON:0001383 | 87.97 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 87.91 | silver quality |
| decidua | UBERON:0002450 | 87.85 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 87.75 | silver quality |
| right coronary artery | UBERON:0001625 | 87.71 | gold quality |
| left coronary artery | UBERON:0001626 | 87.54 | gold quality |
| myocardium | UBERON:0002349 | 87.45 | silver quality |
| muscle organ | UBERON:0001630 | 87.36 | gold quality |
| aorta | UBERON:0000947 | 86.77 | gold quality |
| heart | UBERON:0000948 | 86.76 | gold quality |
| oocyte | CL:0000023 | 86.68 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 86.67 | gold quality |
| coronary artery | UBERON:0001621 | 86.62 | gold quality |
| gingiva | UBERON:0001828 | 86.51 | gold quality |
| vastus lateralis | UBERON:0001379 | 86.14 | silver quality |
| descending thoracic aorta | UBERON:0002345 | 85.61 | gold quality |
| quadriceps femoris | UBERON:0001377 | 85.60 | silver quality |
| diaphragm | UBERON:0001103 | 85.51 | gold quality |
| biceps brachii | UBERON:0001507 | 85.46 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 85.44 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 3.75 |
| E-GEOD-124858 | no | 124.59 |
| E-MTAB-4850 | no | 17.20 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
28 targeting AVEN, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-141-3P | 99.94 | 72.79 | 2421 |
| HSA-MIR-200A-3P | 99.94 | 72.68 | 2420 |
| HSA-MIR-605-3P | 99.88 | 69.22 | 1833 |
| HSA-MIR-6715B-5P | 99.64 | 69.63 | 1420 |
| HSA-MIR-26A-1-3P | 99.64 | 66.81 | 788 |
| HSA-MIR-26A-2-3P | 99.64 | 66.82 | 786 |
| HSA-MIR-4269 | 99.55 | 69.89 | 1373 |
| HSA-MIR-105-5P | 99.54 | 69.24 | 2060 |
| HSA-MIR-7853-5P | 99.54 | 69.30 | 2055 |
| HSA-MIR-4312 | 99.34 | 67.30 | 511 |
| HSA-MIR-4291 | 99.20 | 68.88 | 2969 |
| HSA-MIR-1537-5P | 98.70 | 68.33 | 999 |
| HSA-MIR-548S | 98.50 | 67.17 | 1213 |
| HSA-MIR-338-3P | 98.14 | 67.38 | 1137 |
| HSA-MIR-10395-3P | 98.10 | 66.70 | 1726 |
| HSA-MIR-3977 | 98.00 | 68.17 | 1500 |
| HSA-MIR-892B | 98.00 | 67.11 | 821 |
| HSA-MIR-634 | 97.74 | 67.11 | 818 |
| HSA-MIR-630 | 97.50 | 66.38 | 921 |
| HSA-MIR-938 | 97.41 | 68.28 | 656 |
Literature-anchored findings (GeneRIF, showing 16)
- Aven expression was found to be higher in patients >or=10 years old or <1 year, and with unfavorable cytogenetic abnormalities. It was also significantly higher in relapsed patients in the standard-risk group and an independent poor prognostic factor. (PMID:16388850)
- point mutation observed by transcriptome sequencing of malignant pleural mesothelioma tumors (PMID:18303113)
- These results identify Aven as a new ATM activator and describe a positive feedback loop operating between Aven and ATM; in aggregate, these findings place Aven, a known apoptotic inhibitor, as a critical transducer of the DNA-damage signal. (PMID:18571408)
- the expression level of aven mRNA in de novo AML patients obviously increases (PMID:20030919)
- Results suggest that the regulation of Exportin-1/CRM1-dependent nucleocytoplasmatic traffic of Aven could modulate its ability to influence cell cycle progression. (PMID:20935510)
- The results suggest that deregulation of the expression of the apoptosis inhibitor Aven may be related to male factor infertility. (PMID:21718987)
- a model of Aven activation by which its N-terminal inhibitory domain is removed by CathD-mediated proteolysis, thereby unleashing its cytoprotective function. (PMID:22388353)
- Overexpression of the anti-apoptotic protein AVEN contributes to increased malignancy in hematopoietic neoplasms. (PMID:22751129)
- the expression of Aven is regulated by the Akt signaling pathway through cathepsin D activity, which contributes to the sensitivity of cancer cells to chemotherapeutic agents. (PMID:25573060)
- The findings implicate Aven in ATR-Chk1 signalling and point towards Chk1 inhibition as a strategy to sensitize human osteosarcomas to chemotherapy. (PMID:25757065)
- The Aven RGG/RG motif bound G4 structures within the coding regions of the MLL1 and MLL4 mRNAs increasing their polysomal association and translation, resulting in the induction of transcription of leukemic genes. (PMID:26267306)
- AVEN and BIRC6 are inhibited by combination therapy of miR-30e and proanthocyanidin in glioblastoma stem cells (PMID:27388765)
- Expression of granulosa cell microRNAs, AVEN and ATRX are associated with human blastocyst development. (PMID:29693772)
- MiR-30b-5p expression was found to be significantly upregulated in hypoxic cardiomyocytes, AC16 cells. The in vitro experiments showed that downregulation of miR-30b-5p effectively alleviated hypoxia-induced cardiomyocyte injury. Aven is a potential target gene of miR-30b-5p and its downregulation could partially reverse the influence of miR-30b-5p knockdown on AC16 cells under hypoxia. (PMID:31768184)
- MicroRNA-30a contributes to pre-eclampsia through regulating the proliferation, apoptosis, and angiogenesis modulation potential of mesenchymal stem cells by targeting AVEN. (PMID:35322749)
- Downregulation of apoptotic repressor AVEN exacerbates cardiac injury after myocardial infarction. (PMID:37816050)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | aven | ENSDARG00000002894 |
| mus_musculus | Aven | ENSMUSG00000003604 |
| rattus_norvegicus | Aven | ENSRNOG00000006419 |
Protein
Protein identifiers
Cell death regulator Aven — Q9NQS1 (reviewed: Q9NQS1)
All UniProt accessions (2): Q9NQS1, H0YKR0
UniProt curated annotations — full annotation on UniProt →
Function. Protects against apoptosis mediated by Apaf-1.
Subunit / interactions. Binds Apaf-1, BCL-2 and BAD (Bcl-xl).
Subcellular location. Endomembrane system.
Tissue specificity. Highly expressed in testis, ovary, thymus, prostate, spleen, small intestine, colon, heart, skeletal muscle, liver, kidney and pancreas.
RefSeq proteins (1): NP_065104* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR026187 | Aven | Family |
UniProt features (13 total): compositionally biased region 6, region of interest 3, modified residue 2, chain 1, sequence variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9NQS1-F1 | 58.86 | 0.06 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (2): 94, 230
Function
Pathways and Gene Ontology
Reactome pathways
7 pathways
| ID | Pathway |
|---|---|
| R-HSA-111458 | Formation of apoptosome |
| R-HSA-9627069 | Regulation of the apoptosome activity |
| R-HSA-109581 | Apoptosis |
| R-HSA-109606 | Intrinsic Pathway for Apoptosis |
| R-HSA-111461 | Cytochrome c-mediated apoptotic response |
| R-HSA-111471 | Apoptotic factor-mediated response |
| R-HSA-5357801 | Programmed Cell Death |
MSigDB gene sets: 133 (showing top):
GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_DN, GSE18804_BRAIN_VS_COLON_TUMORAL_MACROPHAGE_DN, GSE18804_SPLEEN_MACROPHAGE_VS_TUMORAL_MACROPHAGE_DN, RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_UP, GOBP_CELL_CYCLE_PHASE_TRANSITION, chr15q14, MONNIER_POSTRADIATION_TUMOR_ESCAPE_UP, GOBP_REGULATION_OF_CELL_CYCLE_G2_M_PHASE_TRANSITION, GOBP_NEGATIVE_REGULATION_OF_CELL_CYCLE_PROCESS, GOBP_NEGATIVE_REGULATION_OF_CELL_CYCLE, BLALOCK_ALZHEIMERS_DISEASE_UP, GOBP_REGULATION_OF_CELL_CYCLE, GOBP_NEGATIVE_REGULATION_OF_MITOTIC_CELL_CYCLE, GOBP_MITOTIC_CELL_CYCLE, GOBP_CELL_CYCLE_G2_M_PHASE_TRANSITION
GO Biological Process (3): apoptotic process (GO:0006915), negative regulation of G2/M transition of mitotic cell cycle (GO:0010972), negative regulation of apoptotic process (GO:0043066)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (3): cytosol (GO:0005829), endomembrane system (GO:0012505), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-6 pathways:
| Category | Pathways |
|---|---|
| Cytochrome c-mediated apoptotic response | 1 |
| Formation of apoptosome | 1 |
| Programmed Cell Death | 1 |
| Apoptosis | 1 |
| Apoptotic factor-mediated response | 1 |
| Intrinsic Pathway for Apoptosis | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| programmed cell death | 1 |
| apoptotic signaling pathway | 1 |
| execution phase of apoptosis | 1 |
| G2/M transition of mitotic cell cycle | 1 |
| regulation of G2/M transition of mitotic cell cycle | 1 |
| negative regulation of mitotic cell cycle phase transition | 1 |
| negative regulation of cell cycle G2/M phase transition | 1 |
| apoptotic process | 1 |
| regulation of apoptotic process | 1 |
| negative regulation of programmed cell death | 1 |
| binding | 1 |
| cytoplasm | 1 |
| vacuole | 1 |
| plasma membrane | 1 |
Protein interactions and networks
STRING
594 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| AVEN | APAF1 | O14727 | 961 |
| AVEN | BCL2L1 | Q07817 | 957 |
| AVEN | FOCAD | Q5VW36 | 627 |
| AVEN | CASP9 | P55211 | 583 |
| AVEN | DHX36 | Q9H2U1 | 503 |
| AVEN | BNIP5 | P0C671 | 468 |
| AVEN | TTC7B | Q86TV6 | 425 |
| AVEN | CASP8 | Q14790 | 408 |
| AVEN | WTIP | A6NIX2 | 393 |
| AVEN | RPL39 | P02404 | 390 |
| AVEN | MAGED4B | Q96JG8 | 378 |
| AVEN | CASP5 | P51878 | 369 |
| AVEN | SEC63 | Q9UGP8 | 369 |
| AVEN | HIPK4 | Q8NE63 | 364 |
| AVEN | ABLIM2 | Q6H8Q1 | 363 |
| AVEN | NDC1 | Q9BTX1 | 363 |
IntAct
15 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SDC1 | ILVBL | psi-mi:“MI:0915”(physical association) | 0.400 |
| APAF1 | AVEN | psi-mi:“MI:0915”(physical association) | 0.400 |
| AVEN | APAF1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| Rpl35 | RPS6 | psi-mi:“MI:0914”(association) | 0.350 |
| RPL10 | RPS6 | psi-mi:“MI:0914”(association) | 0.350 |
| Rrbp1 | PIPSL | psi-mi:“MI:0914”(association) | 0.350 |
| HNRNPU | psi-mi:“MI:0914”(association) | 0.350 | |
| Xpo1 | IFT56 | psi-mi:“MI:0914”(association) | 0.350 |
| DRG1 | RPS3A | psi-mi:“MI:0914”(association) | 0.350 |
| PSPC1 | MCRIP1 | psi-mi:“MI:0914”(association) | 0.350 |
| RBM8A | MCRIP1 | psi-mi:“MI:0914”(association) | 0.350 |
| RPS16 | MCRIP1 | psi-mi:“MI:0914”(association) | 0.350 |
| ANAPC15 | U2SURP | psi-mi:“MI:0914”(association) | 0.350 |
| DDX55 | URB1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (41): AVEN (Affinity Capture-RNA), AVEN (Affinity Capture-RNA), AVEN (Affinity Capture-MS), AVEN (Affinity Capture-MS), AVEN (Affinity Capture-MS), AVEN (Affinity Capture-MS), AVEN (Affinity Capture-MS), AVEN (Two-hybrid), Atm (Two-hybrid), atm (Reconstituted Complex), ATM (Affinity Capture-Western), AVEN (Proximity Label-MS), AVEN (Proximity Label-MS), AVEN (Proximity Label-MS), AVEN (Proximity Label-MS)
ESM2 similar proteins: A0A088MLT8, A5PJX4, B3KU38, P04198, P07516, P0DPB3, P0DPB4, P12755, P18302, P18444, P49796, P97432, Q0D2K3, Q14DQ1, Q15554, Q1W6H9, Q2KI80, Q2WG76, Q3ZK22, Q5E9K8, Q5FVM3, Q5TAB7, Q5VT97, Q5XI52, Q5XKK7, Q61976, Q6J4I0, Q6P2K3, Q80YE2, Q8C4S8, Q8CEG5, Q8IWP9, Q8N344, Q8NE31, Q924S9, Q96A56, Q96MH2, Q9BQ61, Q9BUN5, Q9CZ05
Diamond homologs: Q9D9K3, Q9NQS1
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| ATM | “up-regulates activity” | AVEN | phosphorylation |
| AVEN | “up-regulates activity” | ATM | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 21 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) | 5 | 37.5× | 2e-05 |
| Regulation of expression of SLITs and ROBOs | 5 | 26.6× | 6e-05 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| cytoplasmic translation | 5 | 57.9× | 2e-06 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
290 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 1 |
| Uncertain significance | 199 |
| Likely benign | 52 |
| Benign | 9 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 979414 | GRCh37/hg19 15q13.1-14(chr15:28709714-34506805)x3 | Likely pathogenic |
SpliceAI
3185 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 15:33859570:TCTA:T | acceptor_loss | 1.0000 |
| 15:33859571:CTAGT:C | acceptor_loss | 1.0000 |
| 15:33859572:TAG:T | acceptor_loss | 1.0000 |
| 15:33859573:A:AG | acceptor_gain | 1.0000 |
| 15:33859573:AGT:A | acceptor_gain | 1.0000 |
| 15:33859574:G:GA | acceptor_gain | 1.0000 |
| 15:33859574:GT:G | acceptor_gain | 1.0000 |
| 15:33859574:GTG:G | acceptor_gain | 1.0000 |
| 15:33859574:GTGT:G | acceptor_gain | 1.0000 |
| 15:33859574:GTGTT:G | acceptor_gain | 1.0000 |
| 15:33859729:AAG:A | donor_loss | 1.0000 |
| 15:33859730:AGGTA:A | donor_loss | 1.0000 |
| 15:33859732:G:C | donor_loss | 1.0000 |
| 15:33859733:T:G | donor_loss | 1.0000 |
| 15:33860658:AGGTA:A | donor_loss | 1.0000 |
| 15:33860659:GGTAA:G | donor_loss | 1.0000 |
| 15:33860661:T:G | donor_loss | 1.0000 |
| 15:33861179:G:GG | donor_gain | 1.0000 |
| 15:33865125:TTTCA:T | acceptor_loss | 1.0000 |
| 15:33865126:TTCA:T | acceptor_loss | 1.0000 |
| 15:33865128:CAGG:C | acceptor_loss | 1.0000 |
| 15:33865129:AGGA:A | acceptor_loss | 1.0000 |
| 15:33866724:ACAAA:A | acceptor_gain | 1.0000 |
| 15:33866725:CAAA:C | acceptor_gain | 1.0000 |
| 15:33866725:CAAAC:C | acceptor_gain | 1.0000 |
| 15:33866726:AAA:A | acceptor_gain | 1.0000 |
| 15:33866727:AA:A | acceptor_gain | 1.0000 |
| 15:33866728:AC:A | acceptor_loss | 1.0000 |
| 15:33866729:C:A | acceptor_loss | 1.0000 |
| 15:33866729:C:CC | acceptor_gain | 1.0000 |
AlphaMissense
2311 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 15:33866632:A:G | L357S | 0.999 |
| 15:33875977:A:G | F155S | 0.998 |
| 15:34003123:C:A | W118C | 0.998 |
| 15:34003123:C:G | W118C | 0.998 |
| 15:34003125:A:G | W118R | 0.998 |
| 15:34003125:A:T | W118R | 0.998 |
| 15:33875976:G:C | F155L | 0.996 |
| 15:33875976:G:T | F155L | 0.996 |
| 15:33875978:A:G | F155L | 0.996 |
| 15:34003054:G:C | F141L | 0.996 |
| 15:34003054:G:T | F141L | 0.996 |
| 15:34003056:A:G | F141L | 0.996 |
| 15:34003141:T:A | R112S | 0.996 |
| 15:34003141:T:G | R112S | 0.996 |
| 15:33866636:A:G | W356R | 0.995 |
| 15:33866636:A:T | W356R | 0.995 |
| 15:34003046:A:G | L144P | 0.995 |
| 15:33866620:A:G | I361T | 0.994 |
| 15:33866634:C:A | W356C | 0.994 |
| 15:33866634:C:G | W356C | 0.994 |
| 15:33875952:C:A | W163C | 0.994 |
| 15:33875952:C:G | W163C | 0.994 |
| 15:33875954:A:G | W163R | 0.994 |
| 15:33875954:A:T | W163R | 0.994 |
| 15:33875971:A:G | F157S | 0.994 |
| 15:33875977:A:C | F155C | 0.994 |
| 15:33866620:A:C | I361S | 0.993 |
| 15:34003046:A:T | L144H | 0.993 |
| 15:34003055:A:G | F141S | 0.993 |
| 15:34003043:A:G | L145P | 0.992 |
dbSNP variants (sampled 300 via entrez): RS1000006925 (15:34053652 TCCTTATA>T), RS1000008054 (15:34069352 T>G), RS1000010523 (15:33883620 T>C), RS1000011239 (15:33945427 T>A), RS1000033054 (15:33979250 G>A,T), RS1000035772 (15:33891324 T>C,G), RS1000060238 (15:33956487 G>A), RS1000060906 (15:33883868 A>C,G), RS1000089211 (15:33996366 A>G), RS1000106212 (15:33903414 C>T), RS1000108469 (15:33867650 G>A,C), RS1000113118 (15:33974018 A>G), RS1000114881 (15:34003465 T>A,C), RS1000143686 (15:33969879 T>C), RS1000161863 (15:33912077 T>C)
Disease associations
OMIM: gene MIM:605265 | disease phenotypes: MIM:617468, MIM:208150
GenCC curated gene-disease
Mondo (3): primary amenorrhea (MONDO:1060208), arthrogryposis multiplex congenita (MONDO:0015168), fetal akinesia deformation sequence 1 (MONDO:0100101)
Orphanet (2): Arthrogryposis multiplex congenita (Orphanet:1037), Fetal akinesia deformation sequence (Orphanet:994)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST010725_22 | Malaria | 3.000000e-06 |
| GCST010725_37 | Malaria | 3.000000e-06 |
| GCST010725_54 | Malaria | 5.000000e-06 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
43 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, decreases expression, decreases methylation | 6 |
| Cyclosporine | increases expression | 3 |
| sodium arsenite | decreases expression, increases abundance, increases expression | 2 |
| Air Pollutants | increases expression, decreases expression, increases abundance | 2 |
| Benzo(a)pyrene | decreases expression, decreases methylation, affects methylation | 2 |
| Fluorouracil | decreases expression, increases expression | 2 |
| Cadmium Chloride | increases abundance, increases expression, decreases expression | 2 |
| Particulate Matter | increases abundance, increases expression, decreases expression | 2 |
| FR900359 | increases phosphorylation | 1 |
| propylparaben | increases expression | 1 |
| nobiletin | decreases expression, decreases reaction | 1 |
| sodium arsenate | decreases expression, decreases reaction | 1 |
| arsenite | affects binding, increases reaction | 1 |
| methylparaben | increases expression | 1 |
| cupric chloride | increases expression | 1 |
| phenanthrene | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| entinostat | decreases expression | 1 |
| belinostat | decreases expression | 1 |
| ICG 001 | increases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | increases expression | 1 |
| Gefitinib | affects response to substance | 1 |
| Temozolomide | increases expression | 1 |
| Vorinostat | decreases expression | 1 |
| Arsenic | increases abundance, increases expression | 1 |
| Cadmium | increases abundance, increases expression | 1 |
| Caffeine | decreases phosphorylation | 1 |
| Dichlorodiphenyl Dichloroethylene | increases expression | 1 |
| Drugs, Chinese Herbal | increases expression | 1 |
Clinical trials (associated diseases)
5 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT07164248 | Not specified | COMPLETED | Evaluation of Bone Mineral Density Indications and Outcomes in Female Adolescents: Implications for Early Detection of Osteopenia/Osteoporosis and Gynecologic Practice |
| NCT05393375 | Not specified | COMPLETED | Arthrogryposis Multiplex Congenita in Pediatric Age: Correlation Between MUScular MRI and Functional Evaluation |
| NCT05673265 | Not specified | UNKNOWN | Pediatric and Adult Registry for Patients With ARThrogryposis |
| NCT06130592 | Not specified | UNKNOWN | Technical Feasibility Study of Ultrasound Muscle Imaging in Antenatal Ultrasound |
| NCT07360574 | Not specified | NOT_YET_RECRUITING | Piezo2-related Arthrogryposis & physiopathOLOgy 3 |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): arthrogryposis multiplex congenita, fetal akinesia deformation sequence 1, malaria, primary amenorrhea