AXDND1
geneOn this page
Also known as FLJ32940
Summary
AXDND1 (axonemal dynein light chain domain containing 1, HGNC:26564) is a protein-coding gene on chromosome 1q25.2, encoding Axonemal dynein light chain domain-containing protein 1 (Q5T1B0). May be essential for spermiogenesis and male fertility probably by regulating the manchette dynamics, spermatid head shaping and sperm flagellum assembly.
Predicted to be involved in manchette assembly. Located in ciliary basal body and cytosol.
Source: NCBI Gene 126859 — RefSeq curated summary.
At a glance
- GWAS associations: 8
- Clinical variants (ClinVar): 345 total — 6 pathogenic, 25 likely-pathogenic
- MANE Select transcript:
NM_144696
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:26564 |
| Approved symbol | AXDND1 |
| Name | axonemal dynein light chain domain containing 1 |
| Location | 1q25.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ32940 |
| Ensembl gene | ENSG00000162779 |
| Ensembl biotype | protein_coding |
| Entrez | 126859 |
Gene structure
Transcript identifiers
Ensembl transcripts: 14 — 6 protein_coding, 5 protein_coding_CDS_not_defined, 2 retained_intron, 1 nonsense_mediated_decay
ENST00000367618, ENST00000434088, ENST00000461179, ENST00000484455, ENST00000484883, ENST00000489080, ENST00000507383, ENST00000508229, ENST00000508285, ENST00000509175, ENST00000510593, ENST00000511157, ENST00000511889, ENST00000617277
RefSeq mRNA: 1 — MANE Select: NM_144696
NM_144696
CCDS: CCDS30948
Canonical transcript exons
ENST00000367618 — 26 exons
| Exon | Start | End |
|---|---|---|
| ENSE00003476140 | 179491538 | 179491737 |
| ENSE00003476803 | 179385238 | 179385359 |
| ENSE00003485131 | 179492855 | 179492951 |
| ENSE00003506263 | 179411146 | 179411266 |
| ENSE00003512542 | 179444970 | 179445204 |
| ENSE00003517081 | 179483128 | 179483221 |
| ENSE00003519627 | 179468443 | 179468641 |
| ENSE00003520738 | 179395098 | 179395202 |
| ENSE00003523403 | 179432267 | 179432342 |
| ENSE00003530186 | 179534730 | 179534962 |
| ENSE00003535077 | 179554512 | 179554735 |
| ENSE00003555979 | 179533795 | 179533877 |
| ENSE00003556293 | 179383442 | 179383544 |
| ENSE00003556984 | 179369975 | 179370078 |
| ENSE00003571801 | 179528327 | 179528431 |
| ENSE00003597150 | 179509296 | 179509403 |
| ENSE00003606730 | 179382700 | 179382756 |
| ENSE00003614599 | 179393903 | 179394043 |
| ENSE00003621534 | 179525334 | 179525447 |
| ENSE00003643127 | 179430452 | 179430606 |
| ENSE00003676143 | 179429518 | 179429619 |
| ENSE00003731355 | 179366404 | 179366606 |
| ENSE00003740424 | 179368800 | 179368972 |
| ENSE00003785253 | 179379397 | 179379482 |
| ENSE00003789261 | 179378637 | 179378757 |
| ENSE00003845147 | 179365971 | 179366000 |
Expression profiles
Bgee: expression breadth ubiquitous, 161 present calls, max score 97.57.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1603 / max 8.2348, expressed in 69 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 6911 | 0.1104 | 50 |
| 6910 | 0.0498 | 13 |
Top tissues by expression
246 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| sperm | CL:0000019 | 97.57 | gold quality |
| left testis | UBERON:0004533 | 91.76 | gold quality |
| right testis | UBERON:0004534 | 91.74 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 90.19 | gold quality |
| testis | UBERON:0000473 | 89.46 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 81.65 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 78.82 | gold quality |
| duodenum | UBERON:0002114 | 77.23 | gold quality |
| mucosa of stomach | UBERON:0001199 | 77.03 | gold quality |
| gall bladder | UBERON:0002110 | 73.74 | gold quality |
| transverse colon | UBERON:0001157 | 71.78 | gold quality |
| right uterine tube | UBERON:0001302 | 70.99 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 70.16 | gold quality |
| right adrenal gland | UBERON:0001233 | 68.33 | gold quality |
| colonic mucosa | UBERON:0000317 | 67.66 | gold quality |
| body of stomach | UBERON:0001161 | 67.53 | gold quality |
| jejunal mucosa | UBERON:0000399 | 67.36 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 67.18 | gold quality |
| rectum | UBERON:0001052 | 66.40 | gold quality |
| adrenal tissue | UBERON:0018303 | 65.45 | gold quality |
| left adrenal gland | UBERON:0001234 | 64.77 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 64.52 | gold quality |
| stomach | UBERON:0000945 | 64.12 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 64.11 | gold quality |
| adrenal cortex | UBERON:0001235 | 63.63 | gold quality |
| adrenal gland | UBERON:0002369 | 63.40 | gold quality |
| metanephros cortex | UBERON:0010533 | 63.26 | gold quality |
| bronchial epithelial cell | CL:0002328 | 62.82 | silver quality |
| adult organism | UBERON:0007023 | 62.53 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 62.21 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 6.01 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
19 targeting AXDND1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-363-3P | 99.98 | 74.72 | 1821 |
| HSA-MIR-367-3P | 99.98 | 74.83 | 1819 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-10393-5P | 99.65 | 68.01 | 1368 |
| HSA-MIR-6716-5P | 99.56 | 68.62 | 1244 |
| HSA-MIR-888-3P | 99.53 | 69.77 | 1057 |
| HSA-MIR-4708-3P | 99.51 | 67.99 | 870 |
| HSA-MIR-532-3P | 99.34 | 65.76 | 1195 |
| HSA-MIR-6719-3P | 99.29 | 67.78 | 1387 |
| HSA-MIR-181A-2-3P | 98.91 | 67.60 | 1168 |
| HSA-MIR-4742-5P | 98.89 | 68.41 | 1542 |
| HSA-MIR-3145-3P | 98.85 | 69.07 | 2031 |
| HSA-MIR-4670-3P | 97.37 | 68.35 | 1378 |
| HSA-MIR-10398-5P | 97.12 | 64.94 | 1051 |
| HSA-MIR-588 | 96.45 | 68.36 | 1127 |
| HSA-MIR-4701-5P | 96.45 | 68.41 | 1121 |
Literature-anchored findings (GeneRIF, showing 1)
- AXDND1 is required to balance spermatogonial commitment and for sperm tail formation in mice and humans. (PMID:38997255)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | axdnd1 | ENSDARG00000062355 |
| mus_musculus | Axdnd1 | ENSMUSG00000026601 |
| rattus_norvegicus | Axdnd1 | ENSRNOG00000051405 |
Protein
Protein identifiers
Axonemal dynein light chain domain-containing protein 1 — Q5T1B0 (reviewed: Q5T1B0)
All UniProt accessions (6): Q5T1B0, A6H900, B1AM31, D6R9B7, D6RDY4, D6REE1
UniProt curated annotations — full annotation on UniProt →
Function. May be essential for spermiogenesis and male fertility probably by regulating the manchette dynamics, spermatid head shaping and sperm flagellum assembly.
Subcellular location. Cytoplasm.
Tissue specificity. Highly expressed in testis. Highly expressed in the round and late spermatids.
Disease relevance. Defects in this gene may be a cause of male infertility.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q5T1B0-1 | 1 | yes |
| Q5T1B0-2 | 2 | |
| Q5T1B0-3 | 3 |
RefSeq proteins (1): NP_653297* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR019347 | Axonemal_dynein_light_chain | Family |
| IPR052845 | Axonemal_dynein_LC_domain | Family |
Pfam: PF10211
UniProt features (31 total): sequence variant 13, splice variant 6, compositionally biased region 5, region of interest 3, coiled-coil region 3, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q5T1B0-F1 | 70.90 | 0.19 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 83 (showing top):
GOBP_SINGLE_FERTILIZATION, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_EPITHELIAL_CELL_DEVELOPMENT, GOBP_VESICLE_ORGANIZATION, GOBP_SERTOLI_CELL_DEVELOPMENT, GOBP_VESICLE_MEDIATED_TRANSPORT, GOBP_MALE_GAMETE_GENERATION, AAAYRNCTG_UNKNOWN, GOBP_LEUKOCYTE_MIGRATION, GOBP_REPRODUCTIVE_SYSTEM_DEVELOPMENT, GOBP_CILIUM_ORGANIZATION, GOBP_ORGANELLE_ASSEMBLY, GOBP_CELLULAR_PROCESS_INVOLVED_IN_REPRODUCTION_IN_MULTICELLULAR_ORGANISM, GOBP_MICROTUBULE_BUNDLE_FORMATION, GOBP_SEX_DIFFERENTIATION
GO Biological Process (3): spermatogenesis (GO:0007283), manchette assembly (GO:1905198), cell differentiation (GO:0030154)
GO Molecular Function (0):
GO Cellular Component (4): cytoplasm (GO:0005737), cytosol (GO:0005829), cilium (GO:0005929), ciliary basal body (GO:0036064)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| developmental process involved in reproduction | 1 |
| male gamete generation | 1 |
| spermatid development | 1 |
| cellular component assembly | 1 |
| cellular developmental process | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| intraciliary transport particle | 1 |
| membrane-bounded organelle | 1 |
| plasma membrane bounded cell projection | 1 |
| microtubule organizing center | 1 |
| cilium | 1 |
Protein interactions and networks
STRING
244 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| AXDND1 | CXorf58 | Q96LI9 | 694 |
| AXDND1 | C19orf81 | C9J6K1 | 583 |
| AXDND1 | CFAP97D1 | B2RV13 | 543 |
| AXDND1 | PRR30 | Q53SZ7 | 518 |
| AXDND1 | KIF27 | Q86VH2 | 485 |
| AXDND1 | UMODL1 | Q5DID0 | 484 |
| AXDND1 | BCAS3 | Q9H6U6 | 460 |
| AXDND1 | ARL14 | Q8N4G2 | 435 |
| AXDND1 | EPS8L3 | Q8TE67 | 428 |
| AXDND1 | GAREM1 | Q9H706 | 397 |
| AXDND1 | CIMIP1 | Q9H1P6 | 392 |
| AXDND1 | NT5C1B | Q96P26 | 388 |
| AXDND1 | FEM1A | Q9BSK4 | 387 |
| AXDND1 | TTLL9 | Q3SXZ7 | 370 |
| AXDND1 | CFAP46 | Q8IYW2 | 370 |
IntAct
6 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| AXDND1 | PLEC | psi-mi:“MI:0915”(physical association) | 0.400 |
| AXDND1 | ZFR | psi-mi:“MI:0915”(physical association) | 0.400 |
| SYNE1 | AXDND1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| AXDND1 | SRP68 | psi-mi:“MI:0915”(physical association) | 0.400 |
| AXDND1 | SRP72 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (13): SRP68 (Affinity Capture-MS), AXDND1 (Synthetic Lethality), AXDND1 (Proximity Label-MS), SYNE1 (Proximity Label-MS), ZFR (Proximity Label-MS), SLC39A5 (Affinity Capture-MS), SLC32A1 (Affinity Capture-MS), PIGT (Affinity Capture-MS), UNC5CL (Affinity Capture-MS), SRP72 (Affinity Capture-MS), SRP68 (Affinity Capture-MS), EEA1 (Cross-Linking-MS (XL-MS)), PCF11 (Cross-Linking-MS (XL-MS))
ESM2 similar proteins: A0A1B0GVH7, A6PVS8, A8DZJ1, A9Q751, D3ZSP7, D4AEC2, Q08AD1, Q08CX2, Q14DL3, Q2T9P0, Q2TA00, Q32KQ1, Q3UZ57, Q3V0J4, Q4G0U5, Q4R7B1, Q4R7Z7, Q5S003, Q5SUV2, Q5T1B0, Q5ZLS8, Q63164, Q66HC0, Q69CM7, Q6AXP3, Q6AYL8, Q6IRN6, Q6NXP0, Q6Q759, Q80X60, Q86WZ0, Q8C1B1, Q8C4J0, Q8C636, Q8CDN1, Q8CDU5, Q8IWF9, Q8N7B9, Q8N7U6, Q8ND61
Diamond homologs: Q3UZ57, Q5T1B0, Q95LP5
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
345 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 6 |
| Likely pathogenic | 25 |
| Uncertain significance | 184 |
| Likely benign | 82 |
| Benign | 12 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 3247987 | NC_000001.10:g.(?179520308)(179544999_?)del | Pathogenic |
| 3349861 | NM_014625.4(NPHS2):c.824dup (p.His276fs) | Pathogenic |
| 447882 | NM_014625.4(NPHS2):c.779T>A (p.Val260Glu) | Pathogenic |
| 555445 | NM_014625.4(NPHS2):c.873+1G>A | Pathogenic |
| 635511 | NM_014625.4(NPHS2):c.929A>T (p.Glu310Val) | Pathogenic |
| 801581 | NM_014625.4(NPHS2):c.981del (p.Gln328fs) | Pathogenic |
| 1344831 | NM_014625.4(NPHS2):c.742G>A (p.Ala248Thr) | Likely pathogenic |
| 1344835 | NM_014625.4(NPHS2):c.1120A>T (p.Asn374Tyr) | Likely pathogenic |
| 1344840 | NM_014625.4(NPHS2):c.910_918del (p.Ser304_Arg306del) | Likely pathogenic |
| 1344843 | NM_014625.4(NPHS2):c.1059_1060del (p.Ser354fs) | Likely pathogenic |
| 1346981 | NM_014625.4(NPHS2):c.929A>G (p.Glu310Gly) | Likely pathogenic |
| 224482 | NM_014625.4(NPHS2):c.812C>T (p.Pro271Leu) | Likely pathogenic |
| 2677342 | NM_014625.4(NPHS2):c.795-2A>C | Likely pathogenic |
| 2677343 | NM_014625.4(NPHS2):c.969C>A (p.Tyr323Ter) | Likely pathogenic |
| 2677348 | NM_014625.4(NPHS2):c.896del (p.Lys299fs) | Likely pathogenic |
| 2677349 | NM_014625.4(NPHS2):c.1049del (p.Leu350fs) | Likely pathogenic |
| 2883744 | NM_014625.4(NPHS2):c.865A>G (p.Lys289Glu) | Likely pathogenic |
| 3236169 | NM_144696.6(AXDND1):c.937C>T (p.Arg313Ter) | Likely pathogenic |
| 3239975 | NM_014625.4(NPHS2):c.853C>T (p.Gln285Ter) | Likely pathogenic |
| 3574188 | NM_014625.4(NPHS2):c.1133_1136del (p.Lys378fs) | Likely pathogenic |
| 3574218 | NM_014625.4(NPHS2):c.964C>G (p.Arg322Gly) | Likely pathogenic |
| 3574247 | NM_014625.4(NPHS2):c.874-1G>C | Likely pathogenic |
| 370486 | NM_014625.4(NPHS2):c.795-1G>A | Likely pathogenic |
| 370964 | NM_014625.4(NPHS2):c.1062dup (p.Asn355fs) | Likely pathogenic |
| 447884 | NM_014625.4(NPHS2):c.951del (p.Ala318fs) | Likely pathogenic |
| 4815735 | NM_014625.4(NPHS2):c.830_833del (p.Ser277fs) | Likely pathogenic |
| 4815736 | NM_014625.4(NPHS2):c.841G>A (p.Glu281Lys) | Likely pathogenic |
| 556375 | NM_014625.4(NPHS2):c.979C>T (p.Leu327Phe) | Likely pathogenic |
| 635471 | NM_014625.4(NPHS2):c.823dup (p.Gln275fs) | Likely pathogenic |
| 974486 | NM_014625.4(NPHS2):c.953_955del (p.Ala318del) | Likely pathogenic |
SpliceAI
5194 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:179370076:A:T | donor_gain | 1.0000 |
| 1:179370088:G:GT | donor_gain | 1.0000 |
| 1:179379395:A:G | acceptor_gain | 1.0000 |
| 1:179385232:T:TA | acceptor_gain | 1.0000 |
| 1:179385233:GACA:G | acceptor_loss | 1.0000 |
| 1:179385235:CAG:C | acceptor_loss | 1.0000 |
| 1:179385236:A:AG | acceptor_gain | 1.0000 |
| 1:179385236:A:G | acceptor_loss | 1.0000 |
| 1:179385236:AGAT:A | acceptor_gain | 1.0000 |
| 1:179385237:G:GT | acceptor_gain | 1.0000 |
| 1:179385237:GA:G | acceptor_gain | 1.0000 |
| 1:179385237:GAT:G | acceptor_gain | 1.0000 |
| 1:179385237:GATG:G | acceptor_gain | 1.0000 |
| 1:179385237:GATGC:G | acceptor_gain | 1.0000 |
| 1:179385355:GTCAG:G | donor_gain | 1.0000 |
| 1:179385357:CAGGT:C | donor_loss | 1.0000 |
| 1:179385358:AGGTT:A | donor_loss | 1.0000 |
| 1:179385359:GG:G | donor_loss | 1.0000 |
| 1:179385360:GTTA:G | donor_loss | 1.0000 |
| 1:179395091:A:AG | acceptor_gain | 1.0000 |
| 1:179395094:TCA:T | acceptor_loss | 1.0000 |
| 1:179395095:CA:C | acceptor_loss | 1.0000 |
| 1:179395096:A:AG | acceptor_gain | 1.0000 |
| 1:179395096:AG:A | acceptor_gain | 1.0000 |
| 1:179395096:AGG:A | acceptor_gain | 1.0000 |
| 1:179395097:G:A | acceptor_gain | 1.0000 |
| 1:179395097:G:GG | acceptor_gain | 1.0000 |
| 1:179395097:GGG:G | acceptor_gain | 1.0000 |
| 1:179395097:GGGA:G | acceptor_gain | 1.0000 |
| 1:179395097:GGGAA:G | acceptor_gain | 1.0000 |
AlphaMissense
6741 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:179430494:T:A | W459R | 0.996 |
| 1:179430494:T:C | W459R | 0.996 |
| 1:179445060:T:A | W552R | 0.993 |
| 1:179445060:T:C | W552R | 0.993 |
| 1:179509311:T:A | W802R | 0.993 |
| 1:179509311:T:C | W802R | 0.993 |
| 1:179429575:T:A | W430R | 0.991 |
| 1:179429575:T:C | W430R | 0.991 |
| 1:179411234:T:A | W400R | 0.990 |
| 1:179411234:T:C | W400R | 0.990 |
| 1:179491568:T:A | W708R | 0.990 |
| 1:179491568:T:C | W708R | 0.990 |
| 1:179445091:G:C | R562P | 0.987 |
| 1:179394037:T:C | L333P | 0.986 |
| 1:179483165:T:A | W679R | 0.985 |
| 1:179483165:T:C | W679R | 0.985 |
| 1:179534755:G:C | A942P | 0.984 |
| 1:179379433:T:C | F178L | 0.982 |
| 1:179379435:T:A | F178L | 0.982 |
| 1:179379435:T:G | F178L | 0.982 |
| 1:179430496:G:C | W459C | 0.980 |
| 1:179430496:G:T | W459C | 0.980 |
| 1:179370005:T:A | W101R | 0.979 |
| 1:179370005:T:C | W101R | 0.979 |
| 1:179385302:T:C | L269P | 0.979 |
| 1:179378647:T:C | F129L | 0.978 |
| 1:179378649:T:A | F129L | 0.978 |
| 1:179378649:T:G | F129L | 0.978 |
| 1:179430452:G:C | D445H | 0.977 |
| 1:179385308:G:C | R271P | 0.976 |
dbSNP variants (sampled 300 via entrez): RS1000033832 (1:179516670 C>A), RS1000037575 (1:179449647 G>A), RS1000050223 (1:179472761 T>C), RS1000064232 (1:179552867 A>G), RS1000066916 (1:179467544 A>G), RS1000074676 (1:179407042 A>G), RS1000089827 (1:179390788 T>A,C), RS1000127100 (1:179365779 G>A,C,T), RS1000132721 (1:179514269 T>C), RS1000151658 (1:179533640 T>C), RS1000185449 (1:179513984 A>G), RS1000191951 (1:179466728 A>T), RS1000216669 (1:179441101 A>T), RS1000279199 (1:179516275 G>GT), RS1000297951 (1:179432397 A>G)
Disease associations
OMIM: gene `` | disease phenotypes: MIM:600995
GenCC curated gene-disease
Mondo (8): nephrotic syndrome, type 2 (MONDO:0010974), steroid-resistant nephrotic syndrome (MONDO:0044765), nephrotic syndrome (MONDO:0005377), focal segmental glomerulosclerosis (MONDO:0100313), proteinuria (MONDO:0003634), male infertility (MONDO:0005372), idiopathic nephrotic syndrome (MONDO:0018170), kidney disorder (MONDO:0005240)
Orphanet (2): Hereditary steroid-resistant nephrotic syndrome (Orphanet:656), Idiopathic nephrotic syndrome (Orphanet:357502)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
8 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000267_8 | Multiple sclerosis (age of onset) | 6.000000e-06 |
| GCST007565_141 | Morning person | 7.000000e-14 |
| GCST007576_14 | Chronotype | 7.000000e-14 |
| GCST008161_104 | Waist circumference adjusted for body mass index | 8.000000e-06 |
| GCST008839_591 | Height | 7.000000e-12 |
| GCST009524_178 | Household income (MTAG) | 1.000000e-08 |
| GCST009863_2 | Insulin-related traits (multivariate analysis) | 3.000000e-10 |
| GCST009959_16 | Retinal detachment or retinal break | 5.000000e-06 |
EFO canonical traits (6, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004847 | age at onset |
| EFO:0008328 | chronotype measurement |
| EFO:0007789 | BMI-adjusted waist circumference |
| EFO:0009695 | household income |
| EFO:0004467 | insulin measurement |
| EFO:0010698 | retinal break |
MeSH disease descriptors (5)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D005923 | Glomerulosclerosis, Focal Segmental | C12.050.351.968.419.570.363.640; C12.200.777.419.570.363.660; C12.950.419.570.363.640 |
| D007248 | Infertility, Male | C12.100.500.430; C12.100.750.700; C12.200.294.430 |
| D007674 | Kidney Diseases | C12.050.351.968.419; C12.200.777.419; C12.950.419 |
| D009404 | Nephrotic Syndrome | C12.050.351.968.419.630.643; C12.200.777.419.630.643; C12.950.419.630.643 |
| D011507 | Proteinuria | C12.050.351.968.934.734; C12.200.777.934.734; C12.950.934.734; C23.888.942.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
9 total (human), top 9 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, increases methylation | 2 |
| aristolochic acid I | increases expression | 1 |
| sodium arsenite | increases expression | 1 |
| aflatoxin B2 | increases methylation | 1 |
| Calcitriol | decreases expression | 1 |
| N-Nitrosopyrrolidine | decreases expression | 1 |
| Nickel | decreases expression | 1 |
| Phthalic Acids | increases methylation | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
Clinical trials (associated diseases)
111 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT03408405 | PHASE4 | WITHDRAWN | ACTHAR Gel for Drug REsistant Nephrotic Syndrome in Children |
| NCT00308321 | PHASE4 | UNKNOWN | Long Term Tapering or Standard Steroids for Nephrotic Syndrome |
| NCT01021540 | PHASE4 | COMPLETED | Prospective Study Evaluating the Effect of Repository Corticotropin in the Treatment of Various Nephrotic Syndromes |
| NCT01028287 | PHASE4 | COMPLETED | Adrenocorticotropic Hormone (ACTH) Treatment of Nephrotic Range Proteinuria in Diabetic Nephropathy (NRDN) |
| NCT01162005 | PHASE4 | COMPLETED | Therapeutic Effect of Tacrolimus on Primary Nephrotic Syndrome in Children |
| NCT01895894 | PHASE4 | COMPLETED | Mycophenolate Mofetil in Pediatric Steroid Dependent Nephrotic Syndrome |
| NCT02238418 | PHASE4 | COMPLETED | Efficacy of Usual Vitamin D Supplementation and Its Impact on Children and Adolescents Calciuria. |
| NCT02382575 | PHASE4 | UNKNOWN | Efficacy and Safety of Rituximab to That of Calcineurin Inhibitors in Children With Steroid Resistant Nephrotic Syndrome |
| NCT02427880 | PHASE4 | COMPLETED | Role of Acetazolamide and Hydrochlorothiazide Followed by Furosemide in Treating Nephrotic Edema |
| NCT03210688 | PHASE4 | COMPLETED | Active Vitamin D And Reduced Dose Prednisolone for Treatment in Minimal Change Nephropathy |
| NCT03347357 | PHASE4 | COMPLETED | Pharmacokinetics of Tacrolimus in Children |
| NCT05696977 | PHASE4 | UNKNOWN | Effect of Obesity on Cyclosporine Blood Trough Level in Nephrotic Syndrome Patients |
| NCT05966818 | PHASE4 | UNKNOWN | Effect of Dapagliflozin in Non-Diabetic Patients With Nephrotic Syndrome. |
| NCT06026787 | PHASE4 | COMPLETED | Clinical Value of Adding Dapagliflozin in Patients With Nephrotic Syndrome |
| NCT00354731 | PHASE3 | COMPLETED | Efficacy of Pentoxifylline on Primary Nephrotic Syndrome |
| NCT00615667 | PHASE3 | COMPLETED | Prospective, Multicenter Study of the Efficacy and Tolerance of Tacrolimus on Refractory Nephrotic Syndrome (RNS) |
| NCT00981838 | PHASE3 | COMPLETED | Rituximab in Multirelapsing Minimal Change Disease (MCD) or Focal Segmental Glomerulosclerosis (FSGS) |
| NCT01197040 | PHASE3 | COMPLETED | Evaluation of Low Dose Corticosteroids Efficiency, Associated With Myfortic ® in the Treatment of Nephrotic Syndrome |
| NCT01309477 | PHASE3 | COMPLETED | The Efficacy and Tolerance of Tacrolimus Sustained-release Capsules on Refractory Nephrotic Syndrome (RNS) |
| NCT02132195 | PHASE3 | COMPLETED | Adrenocorticotropic Hormone (ACTH) for Frequently Relapsing and Steroid Dependent Nephrotic Syndrome |
| NCT02257697 | PHASE3 | COMPLETED | A Study to Evaluate the Efficacy and Safety of Mizoribine in the Treatment of Refractory Nephrotic Syndrome |
| NCT02438982 | PHASE3 | COMPLETED | Efficacy and Safety of Rituximab to That of Calcineurin Inhibitors in Children With Steroid Dependent Nephrotic Syndrome |
| NCT03141970 | PHASE3 | COMPLETED | Prednisolone Trial in Children Younger Than 4 Years |
| NCT03501459 | PHASE3 | UNKNOWN | Lymphocyte Markers As Predictors Of Responsiveness To Rituximab Among Patients With Idiopathic Nephrotic Syndrome |
| NCT05079789 | PHASE3 | TERMINATED | Amiloride in Nephrotic Syndrome |
| NCT05716880 | PHASE3 | RECRUITING | Ketoanalogues for Muscle Mass Loss in Nephrotic Syndrome |
| NCT06635720 | PHASE3 | ACTIVE_NOT_RECRUITING | REduced-dose Steroid PrOtocol for Childhood Nephrotic SyndromE (RESPONSE) |
| NCT00001212 | PHASE2 | COMPLETED | Drug Therapy in Lupus Nephropathy |
| NCT00001959 | PHASE2 | COMPLETED | Pirfenidone to Treat Kidney Disease (Focal Segmental Glomerulosclerosis) |
| NCT00004466 | PHASE2 | TERMINATED | Pilot Study of Atorvastatin in Children With Chronic Hyperlipidemia Secondary to Nephrotic Syndrome |
| NCT00004990 | PHASE2 | COMPLETED | Once-A-Month Steroid Treatment for Patients With Focal Segmental Glomerulosclerosis |
| NCT00977977 | PHASE2 | RECRUITING | Rituximab Plus Cyclosporine in Idiopathic Membranous Nephropathy |
| NCT02394106 | PHASE2 | TERMINATED | Ofatumumab in Children With Drug Resistant Idiopathic Nephrotic Syndrome |
| NCT02394119 | PHASE2 | COMPLETED | Ofatumumab Versus Rituximab in Children With Steroid and Calcineurin Inhibitor Dependent Idiopathic Nephrotic Syndrome |
| NCT02592798 | PHASE2 | COMPLETED | Pilot Study to Evaluate the Safety and Efficacy of Abatacept in Adults and Children 6 Years and Older With Excessive Loss of Protein in the Urine Due to Either Focal Segmental Glomerulosclerosis (FSGS) or Minimal Change Disease (MCD) |
| NCT02966717 | PHASE2 | UNKNOWN | Rituximab Combined With MSCs in the Treatment of PNS (3-4 Stage of CKD) |
| NCT03004001 | PHASE2 | TERMINATED | Effect of PCSK9-Antibody (Alirocumab) on Dyslipidemia Secondary to Nephrotic Syndrome |
| NCT03949855 | PHASE2 | RECRUITING | Belimumab With Rituximab for Primary Membranous Nephropathy |
| NCT05599815 | PHASE2 | WITHDRAWN | Part 1 - A Clinical Trial in Patients With Frequently Relapsing and Steroid-Dependent Nephrotic Syndrome |
| NCT05704400 | PHASE2 | UNKNOWN | Efficacy of Anti-CD20 Ab Associated With Anti-CD38 in the Childhood Multidrug Dependent and Resistant Nephrotic Syndrome |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): focal segmental glomerulosclerosis, idiopathic nephrotic syndrome, kidney disorder, male infertility, nephrotic syndrome, nephrotic syndrome, type 2, proteinuria, retinal detachment, steroid-resistant nephrotic syndrome