B2M
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Summary
B2M (beta-2-microglobulin, HGNC:914) is a protein-coding gene on chromosome 15q21.1, encoding Beta-2-microglobulin (P61769). Component of the class I major histocompatibility complex (MHC). In precision oncology, B2M S14FS is associated with resistance to Pembrolizumab in Skin Melanoma (CIViC Level C).
This gene encodes a serum protein found in association with the major histocompatibility complex (MHC) class I heavy chain on the surface of nearly all nucleated cells. The protein has a predominantly beta-pleated sheet structure that can form amyloid fibrils in some pathological conditions. The encoded antimicrobial protein displays antibacterial activity in amniotic fluid. A mutation in this gene has been shown to result in hypercatabolic hypoproteinemia.
Source: NCBI Gene 567 — RefSeq curated summary.
At a glance
- Gene–disease (curated): hypoproteinemia, hypercatabolic (Strong, GenCC) — +3 more curated relationships
- Clinical variants (ClinVar): 104 total — 2 pathogenic, 3 likely-pathogenic
- Phenotypes (HPO): 51
- Druggable target: yes
- Precision-oncology evidence (CIViC): 1 curated variant–drug association
- Cancer driver (intOGen): loss-of-function (tumor-suppressor-like) across 7 cancer types
- MANE Select transcript:
NM_004048
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:914 |
| Approved symbol | B2M |
| Name | beta-2-microglobulin |
| Location | 15q21.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000166710 |
| Ensembl biotype | protein_coding |
| OMIM | 109700 |
| Entrez | 567 |
Gene structure
Transcript identifiers
Ensembl transcripts: 15 — 5 protein_coding, 4 nonsense_mediated_decay, 4 protein_coding_CDS_not_defined, 2 retained_intron
ENST00000349264, ENST00000557901, ENST00000559720, ENST00000559907, ENST00000559916, ENST00000560556, ENST00000560681, ENST00000561139, ENST00000561424, ENST00000623550, ENST00000648006, ENST00000695792, ENST00000906076, ENST00000906077, ENST00000916438
RefSeq mRNA: 1 — MANE Select: NM_004048
NM_004048
CCDS: CCDS10113
Canonical transcript exons
ENST00000617605 — 0 exons
Expression profiles
Bgee: expression breadth ubiquitous, 134 present calls, max score 99.99.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 3314.2823 / max 69373.7594, expressed in 1828 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 146382 | 3309.7016 | 1828 |
| 146385 | 3.4937 | 1066 |
| 146383 | 1.0870 | 524 |
Top tissues by expression
134 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| granulocyte | CL:0000094 | 99.99 | gold quality |
| monocyte | CL:0000576 | 99.99 | gold quality |
| leukocyte | CL:0000738 | 99.99 | gold quality |
| vermiform appendix | UBERON:0001154 | 99.99 | gold quality |
| gall bladder | UBERON:0002110 | 99.99 | gold quality |
| lymph node | UBERON:0000029 | 99.98 | gold quality |
| rectum | UBERON:0001052 | 99.97 | gold quality |
| spleen | UBERON:0002106 | 99.97 | gold quality |
| right lung | UBERON:0002167 | 99.97 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 99.97 | gold quality |
| stromal cell of endometrium | CL:0002255 | 99.96 | gold quality |
| blood | UBERON:0000178 | 99.96 | gold quality |
| calcaneal tendon | UBERON:0003701 | 99.96 | gold quality |
| islet of Langerhans | UBERON:0000006 | 99.95 | gold quality |
| adipose tissue | UBERON:0001013 | 99.95 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 99.95 | gold quality |
| placenta | UBERON:0001987 | 99.95 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 99.95 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 99.95 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 99.94 | gold quality |
| right adrenal gland | UBERON:0001233 | 99.94 | gold quality |
| endometrium | UBERON:0001295 | 99.94 | gold quality |
| thyroid gland | UBERON:0002046 | 99.94 | gold quality |
| duodenum | UBERON:0002114 | 99.94 | gold quality |
| bone marrow | UBERON:0002371 | 99.94 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 99.94 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 99.94 | gold quality |
| omental fat pad | UBERON:0010414 | 99.94 | gold quality |
| metanephros cortex | UBERON:0010533 | 99.94 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 99.93 | gold quality |
Single-cell (SCXA)
Detected in 74 experiment(s), a significant marker in 45.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-8207 | yes | 55889.65 |
| E-GEOD-149689 | yes | 30093.16 |
| E-MTAB-8142 | yes | 28703.09 |
| E-HCAD-11 | yes | 25987.74 |
| E-MTAB-6701 | yes | 25432.67 |
| E-HCAD-1 | yes | 22948.43 |
| E-MTAB-8410 | yes | 22850.40 |
| E-GEOD-134144 | yes | 22473.89 |
| E-MTAB-6678 | yes | 20925.40 |
| E-HCAD-4 | yes | 19751.59 |
| E-CURD-46 | yes | 18300.12 |
| E-GEOD-130148 | yes | 17454.17 |
| E-CURD-79 | yes | 16968.50 |
| E-MTAB-7407 | yes | 16901.82 |
| E-MTAB-10885 | yes | 15310.34 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): MYB, MYC, NFKB1, NFKB2, RELA, SPI1, TP53, USF1, USF2
miRNA regulators (miRDB)
47 targeting B2M, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-568 | 99.98 | 69.86 | 2084 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-3143 | 99.93 | 71.96 | 3104 |
| HSA-MIR-7-1-3P | 99.91 | 71.53 | 4384 |
| HSA-MIR-7-2-3P | 99.91 | 71.40 | 4394 |
| HSA-MIR-106A-5P | 99.90 | 73.94 | 2683 |
| HSA-MIR-17-5P | 99.89 | 73.83 | 2665 |
| HSA-MIR-106B-5P | 99.88 | 74.72 | 2795 |
| HSA-MIR-20A-5P | 99.88 | 74.76 | 2769 |
| HSA-MIR-20B-5P | 99.88 | 74.01 | 2621 |
| HSA-MIR-519D-3P | 99.88 | 73.97 | 2607 |
| HSA-MIR-526B-3P | 99.88 | 74.06 | 2587 |
| HSA-MIR-93-5P | 99.88 | 73.98 | 2606 |
| HSA-MIR-5010-3P | 99.83 | 70.60 | 2357 |
| HSA-MIR-4495 | 99.82 | 72.08 | 3080 |
| HSA-MIR-4517 | 99.76 | 69.19 | 1867 |
| HSA-MIR-3679-3P | 99.64 | 69.88 | 1599 |
| HSA-MIR-2113 | 99.58 | 71.22 | 1521 |
| HSA-MIR-105-5P | 99.54 | 69.24 | 2060 |
| HSA-MIR-7853-5P | 99.54 | 69.30 | 2055 |
| HSA-MIR-3609 | 99.52 | 69.89 | 2587 |
| HSA-MIR-548AH-5P | 99.52 | 69.73 | 2626 |
| HSA-MIR-6833-5P | 99.50 | 68.93 | 1161 |
| HSA-MIR-5590-3P | 99.48 | 70.91 | 2429 |
| HSA-MIR-142-5P | 99.48 | 70.92 | 2416 |
| HSA-MIR-4696 | 99.48 | 67.48 | 1040 |
| HSA-MIR-16-2-3P | 99.29 | 70.60 | 1954 |
| HSA-MIR-195-3P | 99.29 | 70.61 | 1954 |
Literature-anchored findings (GeneRIF, showing 40)
- structure in amyloid fibril formation (PMID:11676539)
- cleaved form partially attains a conformation that has amyloidogenic features (PMID:11801591)
- solution structure determined by (1)H NMR spectroscopy and restrained modeling calculations (PMID:11847272)
- Signal transduction of beta2m-induced expression of VCAM-1 and COX-2 in synovial fibroblasts. (PMID:11849381)
- Strong associations were found between B2M serum levels and chromosome 14q32 abnormalities, but not del(13), in multiple myeloma. (PMID:11877296)
- basis in developing CD8+ T cell antagonists (PMID:11914379)
- Conformation of beta 2-microglobulin amyloid fibrils analyzed by reduction of the disulfide bond (PMID:11943769)
- equilibrium denaturation measured by (1)H-(15)N NMR to determine conformational properties of an amyloidogenic intermediate of human beta(2)-microglobulin (beta(2)m) formed at low pH (PMID:11967566)
- Mapping the core of the beta(2)-microglobulin amyloid fibril by H/D exchange (PMID:11967567)
- Assembly of the FcRn alpha-chain with beta(2)microglobulin is important for both transport of FcRn from the ER to the cell surface and efficient pH-dependent IgG binding. (PMID:12006623)
- Functional reconstitution of human FcRn in Madin-Darby canine kidney cells required co-expression (PMID:12023961)
- Increased expression of beta 2-microglobulin is associated with multiple drug resistance in tumor cells (PMID:12085191)
- Crystal structure reveals clues to its amyloidogenic properties (PMID:12119416)
- Results suggest that the reduced mobility of the denatured state is an important factor for the amylodogenic potential of beta2-microglobulin. (PMID:12192077)
- A dominant negative mutant of this protein blocks the extracellular folding of MHC I heavy chain (PMID:12454016)
- results suggest that the apparent iron-deficient phenotype elicited by haemochromatosis protein (HFE) is not linked to beta(2)microglobulin insufficiency (PMID:12464008)
- Beta2-microglobulin aberrations in diffuse large B-cell lymphoma of the testis and the central nervous system. (PMID:12471623)
- USF1 & USF2 bind to the B2M E box & regulate its transactivation. NF-kappa B subunits p50 & p65 bind to the kappa B box & p65 transactivates beta(2)m. IRFs1, 2,4,& 8 but not PU.1, bind to the Ets/ISRE. IRF1 & IRF3 are strong transactivators of beta(2)m. (PMID:12480693)
- taken up by synovial fibroblasts and macrophages of patients with osteoarthritis (PMID:12480959)
- Data suggest that residues 59-71 may be important in the self-association of partially folded beta(2)microglobulin into amyloid fibrils. (PMID:12488093)
- Block of b2m expression results in complete loss of HLA class I antigen expression on melanoma cells and disease progression (PMID:12516095)
- high concentrations retards the generation of monocyte-derived dendritic cells, which may involve down-regulation of major histocompatibility complex class I molecules, inactivation of Raf/MEK/ERK cascade and NF-kappaB, and activation of STAT3 (PMID:12531797)
- a possible marker of renal function in patients with type 2 diabetes mellitus (PMID:12738401)
- Our analysis suggests that the favored monomer building block for fibril elongation is the conformation of the isolated beta(2)-microglobulin, without the beta-bulge on strand D and without strands A and G participating in the fibril beta-sheet structure (PMID:12818210)
- atomic force microscopy study of beta-2 microglobulin (PMID:12850147)
- beta 2-microglobulin N and C-terminal strands have roles in amyloid formation at neutral pH (PMID:12860117)
- analysis of beta 2-microglobulin amyloid formation with destabilized proteins (PMID:12860118)
- Some glycosaminoglycans and proteoglycans could enhance deposition of beta2m amyloid fibrils in vivo, possibly by binding directly to the surface of the fibrils and stabilizing the conformation of beta2m in the fibrils (PMID:12911560)
- mutations in which proline was introduced to each of the beta-strands of B2M affected the amyloidogenic potential of B2M to various degrees, and demonstrated that stability of the amyloid fibrils is a key factor determining the amyloidogenic potential (PMID:12958308)
- examined the unfolding processes of B2M and two related variants, a DeltaN6 and a Lys57-Asp58 cleavage, by high-temperature molecular dynamics simulations. Conformational changes of variants may relate to polymerization tendencies related to amyloidosis. (PMID:12968074)
- Causes dialysis-related amyloidosis, by virtue of its retention when renal function fails, its deposition in tissues, its aggregation into fibrils, and its ability to become glycosylated. Review. (PMID:14681859)
- structure activity relationship; His31–>Tyr human beta2m mutant, a non-natural form of beta2m that is more stable than the wild-type protein, displaying a ten-fold acceleration of the slow phase of folding (PMID:14698299)
- the internal structures are similar for beta2-microglobulin and amyloid fibril protein (PMID:14699107)
- B2M serum levels can be used as a marker for early diagnosis of cytomegalovirus infection after kidney transplantation. (PMID:15194307)
- Results show that a seven-residue segment of human beta2-microglobulin (beta2M), not found in mouse beta2M, is sufficient to convert beta2M to the amyloid state, and that specific residue interactions are crucial to the conversion. (PMID:15249659)
- beta(2)-microglobulin shows a similar heat capacity change upon amyloid formation to that of the folding to the native globular state, whereas the enthalpy change of the reaction is lower (PMID:15494406)
- effects of guanidine hydrochloride on the amyloid fibrils of beta2-m reveal a cooperative unfolding transition similar to that of the native state. (PMID:15498554)
- an unfolded beta(2)m at C-terminal is found in hemodialysis-related amyloidosis (PMID:15610257)
- There is an optimal concentration of salts required for efficient fibril growth of beta 2-microglobulin, suggesting that counterion interaction is crucial in amyloid formation. (PMID:15667222)
- Unfolded delta lysine-58-cleaved beta2m, a slightly modified beta 2-microglobulin variant generated by limited proteolysis, may behave as a monomeric amyloidogenic intermediate under physiologic conditions. (PMID:15766269)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | zmp:0000001138 | ENSDARG00000071168 |
| mus_musculus | B2m | ENSMUSG00000060802 |
| rattus_norvegicus | B2m | ENSRNOG00000017123 |
Paralogs (13): HLA-DQB1 (ENSG00000179344), HLA-DRB1 (ENSG00000196126), HLA-DQA1 (ENSG00000196735), HLA-DRB5 (ENSG00000198502), HLA-DOA (ENSG00000204252), HLA-DMA (ENSG00000204257), HLA-DRA (ENSG00000204287), HLA-DPB1 (ENSG00000223865), HLA-DPA1 (ENSG00000231389), HLA-DQB2 (ENSG00000232629), HLA-DQA2 (ENSG00000237541), HLA-DOB (ENSG00000241106), HLA-DMB (ENSG00000242574)
Protein
Protein identifiers
Beta-2-microglobulin — P61769 (reviewed: P61769)
All UniProt accessions (4): P61769, H0YLF3, J3KNU0, Q16446
UniProt curated annotations — full annotation on UniProt →
Function. Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system. Exogenously applied M.tuberculosis EsxA or EsxA-EsxB (or EsxA expressed in host) binds B2M and decreases its export to the cell surface (total protein levels do not change), probably leading to defects in class I antigen presentation.
Subunit / interactions. Heterodimer of an alpha chain and a beta chain. Beta-2-microglobulin is the beta-chain of major histocompatibility complex class I molecules. Polymers of beta 2-microglobulin can be found in tissues from patients on long-term hemodialysis. B2M alone (not in complex with HLA-I) interacts with M.tuberculosis EsxA (ESAT-6) and an EsxA-EsxB (CFP-10) complex; the tripartite complex can be detected in the host endoplasmic reticulum. The B2M-EsxA complex can be detected in patients with pleural tuberculosis and is stable from pH 4.0 to 8.0 and in the presence of 2M NaCl. Forms a heterotrimer with HLA-E and a self- or a foreign peptide. Forms a heterotrimer with HLA-G and a self-peptide. Forms a heterotrimer with HLA-F and a self-peptide. Forms a heterotrimer with MR1 and a metabolite antigen.
Subcellular location. Secreted. Cell surface.
Post-translational modifications. Glycation of Ile-21 is observed in long-term hemodialysis patients.
Disease relevance. Immunodeficiency 43 (IMD43) [MIM:241600] A disorder characterized by marked reduction in serum concentrations of immunoglobulins and albumin, and hypoproteinemia due to hypercatabolism. Patients may suffer from recurrent respiratory tract infections and severe skin disease. The disease is caused by variants affecting the gene represented in this entry. Amyloidosis, hereditary systemic 6 (AMYLD6) [MIM:620659] A form of hereditary systemic amyloidosis, a disorder characterized by amyloid deposition in multiple tissues resulting in a wide clinical spectrum. AMYLD6 is mainly characterized by gastrointestinal and cardiac symptoms. Neurologic involvement, sicca syndrome, and carpal tunnel syndrome may also be present. Inheritance is autosomal dominant. The disease is caused by variants affecting the gene represented in this entry. Apart from the presence of causative mutations, beta-2-microglobulin may adopt the fibrillar configuration of amyloid, resulting in amyloidosis, when its serum levels are persistently high, as seen in patients on long-term hemodialysis. In contrast to patients with dialysis-related amyloidosis, patients with hereditary amyloidosis have normal circulating concentrations of beta2-microglobulin.
Similarity. Belongs to the beta-2-microglobulin family.
RefSeq proteins (1): NP_004039* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003006 | Ig/MHC_CS | Conserved_site |
| IPR003597 | Ig_C1-set | Domain |
| IPR007110 | Ig-like_dom | Domain |
| IPR013783 | Ig-like_fold | Homologous_superfamily |
| IPR015707 | B2Microglobulin | Family |
| IPR036179 | Ig-like_dom_sf | Homologous_superfamily |
| IPR050160 | MHC/Immunoglobulin | Family |
Pfam: PF07654
UniProt features (36 total): strand 12, glycosylation site 7, mutagenesis site 3, sequence conflict 3, chain 2, sequence variant 2, turn 2, signal peptide 1, disulfide bond 1, helix 1, domain 1, modified residue 1
Structure
Experimental structures (PDB)
1226 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 4E0K | X-RAY DIFFRACTION | 0.97 |
| 1K5N | X-RAY DIFFRACTION | 1.09 |
| 3MRE | X-RAY DIFFRACTION | 1.1 |
| 2YXF | X-RAY DIFFRACTION | 1.13 |
| 8E2Z | X-RAY DIFFRACTION | 1.13 |
| 7NMR | X-RAY DIFFRACTION | 1.15 |
| 8ROP | X-RAY DIFFRACTION | 1.15 |
| 7R7W | X-RAY DIFFRACTION | 1.17 |
| 4U1M | X-RAY DIFFRACTION | 1.18 |
| 3CZF | X-RAY DIFFRACTION | 1.2 |
| 6Y26 | X-RAY DIFFRACTION | 1.2 |
| 7NMC | X-RAY DIFFRACTION | 1.2 |
| 7NMO | X-RAY DIFFRACTION | 1.2 |
| 7NMT | X-RAY DIFFRACTION | 1.2 |
| 6MT3 | X-RAY DIFFRACTION | 1.21 |
| 8EC5 | X-RAY DIFFRACTION | 1.22 |
| 4RMT | X-RAY DIFFRACTION | 1.24 |
| 7NN5 | X-RAY DIFFRACTION | 1.24 |
| 3IB4 | X-RAY DIFFRACTION | 1.25 |
| 6Y2A | X-RAY DIFFRACTION | 1.25 |
| 7NMY | X-RAY DIFFRACTION | 1.25 |
| 7TUC | X-RAY DIFFRACTION | 1.25 |
| 6V2O | X-RAY DIFFRACTION | 1.27 |
| 6Y29 | X-RAY DIFFRACTION | 1.28 |
| 7WJ2 | X-RAY DIFFRACTION | 1.28 |
| 3LN4 | X-RAY DIFFRACTION | 1.3 |
| 3BWA | X-RAY DIFFRACTION | 1.3 |
| 3D25 | X-RAY DIFFRACTION | 1.3 |
| 3MRG | X-RAY DIFFRACTION | 1.3 |
| 3SPV | X-RAY DIFFRACTION | 1.3 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P61769-F1 | 94.43 | 0.85 |
Antibody-complex structures (SAbDab): 44 — 1W72, 2X89, 3GJF, 3HAE, 4KDT, 4WUU, 5WHK, 6FGB, 6ID4, 6NHA, 6UJ9, 6V7Y, 6V7Z, 6V80, 6W51, 7BBG, 7BH8, 7RE7, 7STF, 7T0L, 7TR4, 8EB2, 8EK5, 8FJA, 8FJB (+19 more)
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 22
Disulfide bonds (1): 45–100
Glycosylation sites (7): 111, 114, 21, 39, 61, 68, 78
Mutagenesis-validated functional residues (3):
| Position | Phenotype |
|---|---|
| 79 | increases tendency towards amyloid formation. |
| 80 | decreases tendency towards amyloid formation. |
| 80 | increases tendency towards amyloid formation. |
Function
Pathways and Gene Ontology
Reactome pathways
32 pathways
| ID | Pathway |
|---|---|
| R-HSA-1236974 | ER-Phagosome pathway |
| R-HSA-1236977 | Endosomal/Vacuolar pathway |
| R-HSA-164940 | Nef mediated downregulation of MHC class I complex cell surface expression |
| R-HSA-198933 | Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell |
| R-HSA-2172127 | DAP12 interactions |
| R-HSA-2424491 | DAP12 signaling |
| R-HSA-6798695 | Neutrophil degranulation |
| R-HSA-877300 | Interferon gamma signaling |
| R-HSA-9637628 | Modulation by Mtb of host immune system |
| R-HSA-9705671 | SARS-CoV-2 activates/modulates innate and adaptive immune responses |
| R-HSA-977225 | Amyloid fiber formation |
| R-HSA-983170 | Antigen Presentation: Folding, assembly and peptide loading of class I MHC |
| R-HSA-1236975 | Antigen processing-Cross presentation |
| R-HSA-1280215 | Cytokine Signaling in Immune system |
| R-HSA-1280218 | Adaptive Immune System |
| R-HSA-162906 | HIV Infection |
| R-HSA-162909 | Host Interactions of HIV factors |
| R-HSA-1643685 | Disease |
| R-HSA-164938 | Nef-mediates down modulation of cell surface receptors by recruiting them to clathrin adapters |
| R-HSA-164952 | The role of Nef in HIV-1 replication and disease pathogenesis |
| R-HSA-168249 | Innate Immune System |
| R-HSA-168256 | Immune System |
| R-HSA-392499 | Metabolism of proteins |
| R-HSA-5663205 | Infectious disease |
| R-HSA-913531 | Interferon Signaling |
| R-HSA-9635486 | Infection with Mycobacterium tuberculosis |
| R-HSA-9679506 | SARS-CoV Infections |
| R-HSA-9694516 | SARS-CoV-2 Infection |
| R-HSA-9705683 | SARS-CoV-2-host interactions |
| R-HSA-9824439 | Bacterial Infection Pathways |
MSigDB gene sets: 767 (showing top):
GOBP_MYELOID_CELL_DIFFERENTIATION, GSE45365_NK_CELL_VS_CD8A_DC_UP, GOBP_NEGATIVE_REGULATION_OF_EPITHELIAL_CELL_PROLIFERATION, GOBP_REGULATION_OF_CELL_ACTIVATION, GOBP_MEMBRANE_DEPOLARIZATION, SHEPARD_BMYB_MORPHOLINO_UP, FLECHNER_PBL_KIDNEY_TRANSPLANT_REJECTED_VS_OK_UP, GOBP_ANTIGEN_PROCESSING_AND_PRESENTATION_OF_PEPTIDE_OR_POLYSACCHARIDE_ANTIGEN_VIA_MHC_CLASS_II, GOBP_NEGATIVE_REGULATION_OF_CELL_DEVELOPMENT, REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_NEGATIVE_REGULATION_OF_NEURON_DIFFERENTIATION, GOBP_POSITIVE_REGULATION_OF_ADAPTIVE_IMMUNE_RESPONSE, GOBP_ANTIMICROBIAL_HUMORAL_RESPONSE, GOBP_COGNITION, GOBP_POSITIVE_REGULATION_OF_ENDOCYTOSIS
GO Biological Process (38): T cell mediated cytotoxicity (GO:0001913), positive regulation of T cell mediated cytotoxicity (GO:0001916), response to molecule of bacterial origin (GO:0002237), antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent (GO:0002481), peptide antigen assembly with MHC class I protein complex (GO:0002502), peptide antigen assembly with MHC class II protein complex (GO:0002503), positive regulation of T cell cytokine production (GO:0002726), intracellular iron ion homeostasis (GO:0006879), sensory perception of smell (GO:0007608), learning or memory (GO:0007611), negative regulation of neuron projection development (GO:0010977), antigen processing and presentation of endogenous peptide antigen via MHC class I (GO:0019885), antigen processing and presentation of exogenous peptide antigen via MHC class II (GO:0019886), T cell differentiation in thymus (GO:0033077), transferrin transport (GO:0033572), regulation of iron ion transport (GO:0034756), negative regulation of iron ion transport (GO:0034757), protein refolding (GO:0042026), regulation of erythrocyte differentiation (GO:0045646), positive regulation of receptor-mediated endocytosis (GO:0048260), negative regulation of receptor-mediated endocytosis (GO:0048261), negative regulation of epithelial cell proliferation (GO:0050680), negative regulation of neurogenesis (GO:0050768), positive regulation of immune response (GO:0050778), positive regulation of T cell activation (GO:0050870), protein homotetramerization (GO:0051289), multicellular organismal-level iron ion homeostasis (GO:0060586), cellular response to iron ion (GO:0071281), cellular response to iron(III) ion (GO:0071283), cellular response to nicotine (GO:0071316), amyloid fibril formation (GO:1990000), positive regulation of cellular senescence (GO:2000774), negative regulation of forebrain neuron differentiation (GO:2000978), immune system process (GO:0002376), antigen processing and presentation of peptide antigen via MHC class I (GO:0002474), iron ion transport (GO:0006826), immune response (GO:0006955), response to metal ion (GO:0010038)
GO Molecular Function (6): structural molecule activity (GO:0005198), MHC class II protein complex binding (GO:0023026), peptide antigen binding (GO:0042605), identical protein binding (GO:0042802), protein homodimerization activity (GO:0042803), protein binding (GO:0005515)
GO Cellular Component (26): Golgi membrane (GO:0000139), extracellular region (GO:0005576), obsolete extracellular space (GO:0005615), lysosomal membrane (GO:0005765), endoplasmic reticulum (GO:0005783), endoplasmic reticulum lumen (GO:0005788), Golgi apparatus (GO:0005794), cytosol (GO:0005829), plasma membrane (GO:0005886), focal adhesion (GO:0005925), external side of plasma membrane (GO:0009897), ER to Golgi transport vesicle membrane (GO:0012507), membrane (GO:0016020), phagocytic vesicle membrane (GO:0030670), early endosome membrane (GO:0031901), late endosome membrane (GO:0031902), early endosome lumen (GO:0031905), specific granule lumen (GO:0035580), MHC class I protein complex (GO:0042612), MHC class II protein complex (GO:0042613), MHC class I peptide loading complex (GO:0042824), recycling endosome membrane (GO:0055038), extracellular exosome (GO:0070062), tertiary granule lumen (GO:1904724), HFE-transferrin receptor complex (GO:1990712), cell surface (GO:0009986)
Reactome top-level categories
Rollup of top-15 pathways:
| Category | Pathways |
|---|---|
| Antigen processing-Cross presentation | 2 |
| Innate Immune System | 2 |
| Class I MHC mediated antigen processing & presentation | 2 |
| Immune System | 2 |
| Nef-mediates down modulation of cell surface receptors by recruiting them to clathrin adapters | 1 |
| Adaptive Immune System | 1 |
| DAP12 interactions | 1 |
| Interferon Signaling | 1 |
| Infection with Mycobacterium tuberculosis | 1 |
| SARS-CoV-2-host interactions | 1 |
| Metabolism of proteins | 1 |
| Viral Infection Pathways | 1 |
| HIV Infection | 1 |
| The role of Nef in HIV-1 replication and disease pathogenesis | 1 |
| Host Interactions of HIV factors | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| iron ion transport | 3 |
| cellular anatomical structure | 3 |
| cytoplasm | 3 |
| positive regulation of T cell mediated immunity | 2 |
| antigen processing and presentation of peptide antigen via MHC class I | 2 |
| peptide antigen assembly with MHC protein complex | 2 |
| antigen processing and presentation of peptide antigen via MHC class II | 2 |
| endomembrane system | 2 |
| intracellular membrane-bounded organelle | 2 |
| early endosome | 2 |
| endosome membrane | 2 |
| MHC protein complex | 2 |
| leukocyte mediated cytotoxicity | 1 |
| T cell mediated immunity | 1 |
| positive regulation of leukocyte mediated cytotoxicity | 1 |
| T cell mediated cytotoxicity | 1 |
| regulation of T cell mediated cytotoxicity | 1 |
| response to bacterium | 1 |
| response to external biotic stimulus | 1 |
| antigen processing and presentation of exogenous peptide antigen via MHC class Ib | 1 |
| MHC class I protein complex assembly | 1 |
| MHC class II protein complex assembly | 1 |
| T cell cytokine production | 1 |
| positive regulation of cytokine production involved in immune response | 1 |
| regulation of T cell cytokine production | 1 |
| intracellular monoatomic cation homeostasis | 1 |
| inorganic ion homeostasis | 1 |
| sensory perception of chemical stimulus | 1 |
| behavior | 1 |
| cognition | 1 |
| regulation of neuron projection development | 1 |
| neuron projection development | 1 |
| negative regulation of cell projection organization | 1 |
| antigen processing and presentation of endogenous peptide antigen | 1 |
| antigen processing and presentation of exogenous peptide antigen | 1 |
| T cell differentiation | 1 |
| protein transport | 1 |
| regulation of metal ion transport | 1 |
| regulation of iron ion transport | 1 |
| negative regulation of monoatomic ion transport | 1 |
Protein interactions and networks
STRING
0 interactions, top by confidence (×1000):
IntAct
269 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| B2M | B2M | psi-mi:“MI:0407”(direct interaction) | 0.980 |
| B2M | B2M | psi-mi:“MI:0195”(covalent binding) | 0.980 |
| HLA-B | B2M | psi-mi:“MI:0915”(physical association) | 0.930 |
BioGRID (146): B2M (Reconstituted Complex), B2M (Affinity Capture-MS), B2M (Affinity Capture-MS), B2M (Affinity Capture-MS), B2M (Affinity Capture-MS), B2M (Affinity Capture-MS), B2M (Synthetic Growth Defect), B2M (Two-hybrid), B2M (Co-localization), B2M (Affinity Capture-MS), RGPD2 (Affinity Capture-MS), FCGRT (Affinity Capture-MS), RGPD5 (Affinity Capture-MS), DLGAP5 (Affinity Capture-MS), TPST1 (Affinity Capture-MS)
ESM2 similar proteins: O42197, O77517, O77518, O77519, O77520, O77521, O77523, O77524, O77525, O77526, O77528, O77529, O77530, O77531, O77533, O77534, O77535, O77536, O77537, P07151, P16213, P55076, P55079, P61769, P61770, P61771, P63060, P63061, P63062, P63063, P63064, P63065, P63066, P63067, P63068, P63069, P63070, P63071, Q03422, Q04475
Diamond homologs: O42197, O77517, O77518, O77519, O77520, O77521, O77523, O77524, O77525, O77526, O77528, O77529, O77530, O77531, O77532, O77533, O77534, O77535, O77536, O77537, P01844, P01885, P01886, P01887, P01888, P01906, P01910, P04227, P04228, P04440, P07151, P14434, P14435, P14436, P14437, P14438, P15981, P16213, P19341, P20036
SIGNOR signaling
5 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| USF1 | “up-regulates quantity by expression” | B2M | “transcriptional regulation” |
| USF2 | “up-regulates quantity by expression” | B2M | “transcriptional regulation” |
| RELA | “up-regulates quantity by expression” | B2M | “transcriptional regulation” |
| NfKb-p65/p50 | “up-regulates quantity by expression” | B2M | “transcriptional regulation” |
| B2M | “form complex” | “Class I MHC” | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 77 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Antigen Presentation: Folding, assembly and peptide loading of class I MHC | 8 | 78.8× | 2e-11 |
| ER-Phagosome pathway | 8 | 25.9× | 5e-08 |
| Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell | 11 | 24.0× | 7e-11 |
| Interferon alpha/beta signaling | 6 | 22.8× | 1e-05 |
| Interferon gamma signaling | 6 | 18.8× | 4e-05 |
| SARS-CoV-2 activates/modulates innate and adaptive immune responses | 8 | 17.8× | 9e-07 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| positive regulation of T cell mediated cytotoxicity | 10 | 113.5× | 2e-16 |
| adaptive immune response | 8 | 15.0× | 3e-06 |
| immune response | 14 | 14.6× | 5e-11 |
Disease & clinical
Cancer significance
From intOGen — cancer-driver classification: loss-of-function (tumor-suppressor-like) across 7 cancer types — CESC, DLBCLNOS, HNSC, MEL, MLYM, NHL, NSCLC.
Clinical variants and AI predictions
ClinVar
104 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 3 |
| Uncertain significance | 39 |
| Likely benign | 33 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (5)
| Variant ID | HGVS | Classification |
|---|---|---|
| 2824511 | NM_004048.4(B2M):c.20T>A (p.Leu7Ter) | Pathogenic |
| 31907 | NM_004048.4(B2M):c.286G>A (p.Asp96Asn) | Pathogenic |
| 217869 | NM_004048.4(B2M):c.67+1G>T | Likely pathogenic |
| 3577174 | NM_004048.4(B2M):c.2T>C (p.Met1Thr) | Likely pathogenic |
| 4808285 | NM_004048.4(B2M):c.68-2A>C | Likely pathogenic |
SpliceAI
402 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 15:44711612:GC:G | donor_gain | 1.0000 |
| 15:44711614:G:GG | donor_gain | 1.0000 |
| 15:44715418:CTCA:C | acceptor_loss | 1.0000 |
| 15:44715419:TCA:T | acceptor_loss | 1.0000 |
| 15:44715420:CAG:C | acceptor_loss | 1.0000 |
| 15:44715421:A:AC | acceptor_loss | 1.0000 |
| 15:44715641:GA:G | donor_gain | 1.0000 |
| 15:44715693:T:G | donor_gain | 1.0000 |
| 15:44715697:GTGGG:G | donor_gain | 1.0000 |
| 15:44715699:GGG:G | donor_gain | 1.0000 |
| 15:44715700:GG:G | donor_gain | 1.0000 |
| 15:44715700:GGG:G | donor_gain | 1.0000 |
| 15:44715701:GG:G | donor_gain | 1.0000 |
| 15:44716313:A:AG | acceptor_gain | 1.0000 |
| 15:44716313:ACT:A | acceptor_gain | 1.0000 |
| 15:44716314:C:G | acceptor_gain | 1.0000 |
| 15:44716315:T:A | acceptor_gain | 1.0000 |
| 15:44716326:T:G | acceptor_gain | 1.0000 |
| 15:44716327:A:AG | acceptor_gain | 1.0000 |
| 15:44716328:G:GG | acceptor_gain | 1.0000 |
| 15:44716328:GA:G | acceptor_gain | 1.0000 |
| 15:44716328:GATC:G | acceptor_gain | 1.0000 |
| 15:44716355:AGGT:A | donor_loss | 1.0000 |
| 15:44716356:GGT:G | donor_loss | 1.0000 |
| 15:44716357:G:T | donor_loss | 1.0000 |
| 15:44716358:T:A | donor_loss | 1.0000 |
| 15:44717601:TTTCA:T | acceptor_loss | 1.0000 |
| 15:44717602:TTCA:T | acceptor_loss | 1.0000 |
| 15:44717603:TCA:T | acceptor_loss | 1.0000 |
| 15:44717604:CAG:C | acceptor_loss | 1.0000 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000219847 (15:44712011 C>T), RS1000272307 (15:44711761 G>A,C), RS1000540082 (15:44717506 T>C), RS1000606334 (15:44710366 A>G), RS1000996352 (15:44711811 C>A,T), RS1001671393 (15:44714931 T>A), RS1001988503 (15:44713070 A>G), RS1001996727 (15:44713468 C>A), RS1002553374 (15:44714300 A>G), RS1002617998 (15:44715854 G>A), RS1002665848 (15:44716125 A>C,G,T), RS1002672364 (15:44716446 G>C,T), RS1004444280 (15:44712535 G>T), RS1004630351 (15:44712734 T>C,G), RS1004777040 (15:44711100 A>G)
Disease associations
OMIM: gene MIM:109700 | disease phenotypes: MIM:241600, MIM:105200, MIM:620659, MIM:604360
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| hypoproteinemia, hypercatabolic | Strong | Autosomal recessive |
| variant ABeta2M amyloidosis | Strong | Autosomal dominant |
| MHC class I deficiency | Supportive | Autosomal recessive |
| familial visceral amyloidosis | Limited | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| hypoproteinemia, hypercatabolic | Limited | AR |
Mondo (7): hypoproteinemia, hypercatabolic (MONDO:0009434), familial visceral amyloidosis (MONDO:0007099), amyloidosis, hereditary systemic 6 (MONDO:0971010), non-Hodgkin lymphoma (MONDO:0018908), hereditary spastic paraplegia 11 (MONDO:0011445), variant ABeta2M amyloidosis (MONDO:0017810), MHC class I deficiency (MONDO:0011476)
Orphanet (3): Hereditary amyloidosis with primary renal involvement (Orphanet:85450), Non-Hodgkin lymphoma (Orphanet:547), Autosomal recessive spastic paraplegia type 11 (Orphanet:2822)
HPO phenotypes
51 total (30 of 51 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000157 | Abnormality of the tongue |
| HP:0000969 | Edema |
| HP:0001271 | Polyneuropathy |
| HP:0001278 | Orthostatic hypotension |
| HP:0001482 | Subcutaneous nodule |
| HP:0001824 | Weight loss |
| HP:0001917 | Renal amyloidosis |
| HP:0002028 | Chronic diarrhea |
| HP:0002094 | Dyspnea |
| HP:0002110 | Bronchiectasis |
| HP:0002176 | Spinal cord compression |
| HP:0002205 | Recurrent respiratory infections |
| HP:0002756 | Pathologic fracture |
| HP:0002986 | Radial bowing |
| HP:0003022 | Hypoplasia of the ulna |
| HP:0003073 | Hypoalbuminemia |
| HP:0003075 | Hypoproteinemia |
| HP:0003365 | Arthralgia of the hip |
| HP:0003621 | Juvenile onset |
| HP:0004315 | Decreased circulating IgG concentration |
| HP:0005244 | Gastrointestinal infarctions |
| HP:0007141 | Sensorimotor neuropathy |
| HP:0010286 | Abnormal salivary gland morphology |
| HP:0010976 | Decreased total B cell count |
| HP:0011805 | Abnormal skeletal muscle morphology |
| HP:0011915 | Cardiovascular calcification |
| HP:0012065 | Multiple bony cystic lesions |
| HP:0012185 | Constrictive median neuropathy |
GWAS associations
0 associations (top):
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008228 | Lymphoma, Non-Hodgkin | C04.557.386.480; C15.604.515.569.480; C20.683.515.761.480 |
| C538249 | Amyloidosis, familial visceral (supp.) | |
| C565476 | Hypoproteinemia, Hypercatabolic (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL1741302 (SINGLE PROTEIN), CHEMBL5465401 (PROTEIN COMPLEX)
Clinical evidence (CIViC)
Drug × variant × indication: 1 predictive associations from 1 curated evidence items.
| Variant | Therapy | Indication | Effect | Level | CIViC |
|---|---|---|---|---|---|
| B2M S14FS | Pembrolizumab | Skin Melanoma | Resistance | CIViC C | EID1569 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
Binding affinities (BindingDB)
1 measured of 5 human assays (7 total across all organisms); most potent 1 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| (4S,4aR,5S,5aS,12aS)-4-(dimethylamino)-5,10,12a-trihydroxy-1,3,11,12-tetraketo-6-methylene-4a,5,5a,11a-tetrahydro-4H-tetracene-2-carboxamide;hydrochloride | IC50 | 122000 nM |
CTD chemical–gene interactions
104 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression, decreases methylation | 8 |
| Cadmium | affects secretion, increases expression, increases secretion, increases abundance, affects reaction | 4 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| Air Pollutants | increases abundance, decreases expression, affects expression | 3 |
| Arsenic | increases expression, increases abundance, increases secretion, decreases expression | 3 |
| Metribolone | increases secretion, decreases reaction, increases expression | 3 |
| bisphenol A | affects expression, increases expression | 2 |
| sodium arsenite | decreases expression, increases abundance | 2 |
| chloropicrin | affects expression, decreases expression | 2 |
| Decitabine | affects expression, increases expression | 2 |
| Acetaminophen | increases expression | 2 |
| Air Pollutants, Occupational | increases expression | 2 |
| Copper | affects binding, decreases folding, decreases stability, increases reaction | 2 |
| Estradiol | decreases expression, increases expression | 2 |
| Ifosfamide | increases expression | 2 |
| Lead | affects expression, increases abundance, increases secretion | 2 |
| Nickel | increases expression | 2 |
| Ozone | affects expression, increases abundance, increases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Rotenone | decreases expression, increases expression | 2 |
| Smoke | increases abundance, decreases expression | 2 |
| Dihydrotestosterone | increases expression, decreases reaction | 2 |
| Tretinoin | increases expression | 2 |
| bisphenol F | increases expression | 1 |
| shuanghuang shengbai | increases expression | 1 |
| napabucasin | decreases expression | 1 |
| dicrotophos | decreases expression | 1 |
| methylmercuric chloride | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| uranyl acetate | affects expression | 1 |
ChEMBL screening assays
5 unique, capped per target: 5 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5650979 | Binding | Binding affinity to human B2M incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Cellosaurus cell lines
205 cell lines: 162 cancer cell line, 17 spontaneously immortalized cell line, 17 induced pluripotent stem cell, 6 embryonic stem cell, 3 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_0008 | Daudi | Cancer cell line | Male |
| CVCL_0248 | DLD-1 | Cancer cell line | Male |
| CVCL_0292 | HCT 15 | Cancer cell line | Male |
| CVCL_0399 | LoVo | Cancer cell line | Male |
| CVCL_1514 | NCI-H2009 | Cancer cell line | Female |
| CVCL_1533 | NCI-H2135 | Cancer cell line | Sex unspecified |
| CVCL_1550 | NCI-H2347 | Cancer cell line | Female |
| CVCL_1616 | OC 314 | Cancer cell line | Female |
| CVCL_1618 | OC 316 | Cancer cell line | Female |
| CVCL_1707 | SNG-M | Cancer cell line | Female |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00090038 | PHASE4 | COMPLETED | Effect of Rituximab on Immunological Recall Response to Specific Antigens in the Treatment of Non-Hodgkin’s Lymphoma |
| NCT00162955 | PHASE4 | COMPLETED | Prevention of CHOP-induced Chronic Cardiotoxicity |
| NCT00277160 | PHASE4 | COMPLETED | A Study of Primary Prophylaxis With Neulasta (Pegfilgrastim) Versus Secondary Prophylaxis After Chemotherapy in Elderly Subjects (>/= 65 Years Old) With Cancer |
| NCT00352703 | PHASE4 | COMPLETED | PROMPT - Palifermin in Reduction of Oral Mucositis in PBSC Transplantation |
| NCT00430352 | PHASE4 | COMPLETED | MAXIMA Study: A Study of Maintenance Therapy With MabThera (Rituximab) in Patients With Non-Hodgkin’s Lymphoma. |
| NCT00797810 | PHASE4 | UNKNOWN | Intensification Therapy of Mature B-ALL, Burkitt and Burkitt Like and Other High Grade Non-Hodgkin’s Lymphoma in Adults |
| NCT00808171 | PHASE4 | COMPLETED | Evaluation of the Analgesy With Emla and/or Nitrous Oxide in Pediatric Patients for Lumbar Puncture |
| NCT00926757 | PHASE4 | COMPLETED | Prophylactic Use of Entecavir for Non-Hodgkin’s Lymphoma Patients With Resolved Hepatitis B |
| NCT00969462 | PHASE4 | COMPLETED | Doxorubicin Pharmacokinetics and Response in Non Hodgkin’s Lymphoma |
| NCT01124526 | PHASE4 | COMPLETED | Efficacy Response Duration and Toxicity of Rituximab, Fludarabine, and Cyclophosphamide (RFC) as 1st Line Treatment and Rituximab (R) in Maintenance Treatment in Follicular Non Hodgkin (FNH) Lymphoma |
| NCT01164475 | PHASE4 | COMPLETED | Evaluation of Approved Weight-Based Dose Compared to Fixed Dose of Plerixafor in Patients With Non-Hodgkin’s Lymphoma (NHL) Weighing Less Than 70 Kilograms |
| NCT01180049 | PHASE4 | COMPLETED | Comparison Of 2 Doses Of Temsirolimus (Torisel) In Patients With Mantle Cell Lymphoma |
| NCT02782845 | PHASE4 | COMPLETED | An Expanded Access Program of Pegfilgrastim (Neulastim) in Participants With Non-Hodgkin’s Lymphoma (NHL) |
| NCT05191225 | PHASE4 | UNKNOWN | Ultrafast Truxima Infusion in Non-Hodgkin’s Lymphoma: Txagorapid Study |
| NCT06665737 | PHASE4 | NOT_YET_RECRUITING | Outcomes of Early and Late Administration G-CSF for Primary Prophylaxis in Non-Hodgkin’s Lymphoma Patients |
| NCT06876649 | PHASE4 | RECRUITING | A Master Protocol to Evaluate the Long-Term Safety of (LY3527727) Pirtobrutinib |
| NCT06876662 | PHASE4 | RECRUITING | A Study of (LY3527727) Pirtobrutinib in Participants With Previously Treated Chronic Lymphocytic Leukemia/Small Lymphocytic Lymphoma or Non-Hodgkin Lymphoma |
| NCT07016165 | PHASE4 | RECRUITING | Ciprofloxacin vs Ceftazidime for Empirical Treatment of High-Risk Neutropenic Fever in Children With Hematologic Malignancies |
| NCT00039910 | PHASE3 | COMPLETED | Safety and Efficacy of (PN-152,243)/PN-196,444 in the Prevention of Thrombocytopenia |
| NCT00057343 | PHASE3 | TERMINATED | Safety and Efficacy of Zevalin in the Treatment of Non-Hodgkin’s Lymphoma |
| NCT00078598 | PHASE3 | UNKNOWN | A Study of Rituximab Versus Iodine I 131 Tositumomab Therapy for Patients With Non-Hodgkin’s Lymphoma |
| NCT00091676 | PHASE3 | UNKNOWN | Study of the BiovaxId Tumor Derived Idiotype Vaccine in Patients With Follicular Lymphoma |
| NCT00129090 | PHASE3 | COMPLETED | Mega-CHOEP: Conventional Chemo Vs HD Chemo Followed by Auto SCT in Younger Pts With Aggressive Non-Hodgkin’s Lymphoma |
| NCT00133302 | PHASE3 | TERMINATED | Study of Standard CHOP Versus Biweekly CHOP in Aggressive Non-Hodgkin’s Lymphoma (JCOG9809) |
| NCT00139841 | PHASE3 | COMPLETED | Safety and Efficacy of Treanda™ (Bendamustine HCl) in Patients With Indolent Non-Hodgkin’s Lymphoma (NHL) Who Are Refractory to Rituximab |
| NCT00145652 | PHASE3 | COMPLETED | Adjuvant I.V. Iron Therapy During Erythropoetin Treatment of Anemic Patients With Lymphoproliferative Disorders. |
| NCT00152139 | PHASE3 | COMPLETED | Stem Cell Transplantation for Patients With Hematologic Malignancies |
| NCT00269113 | PHASE3 | COMPLETED | A Study of MabThera (Rituximab) in Patients With Advanced Non-Hodgkin’s Lymphoma |
| NCT00312845 | PHASE3 | COMPLETED | Study of VELCADE and Rituximab in Patients With Relapsed or Refractory B-cell Non-Hodgkin’s Lymphoma |
| NCT00332202 | PHASE3 | COMPLETED | PRELUDE:Study to Investigate the Prevention of Relapse in Lymphoma Using Daily Enzastaurin |
| NCT00352846 | PHASE3 | COMPLETED | Effect of Zoledronic Acid on Chemotherapy Induced Bone Loss |
| NCT00398411 | PHASE3 | COMPLETED | Moxifloxacin in the Prevention of Bacteremia After High-dose Chemotherapy and Transplantation of Peripheral Stem Cells |
| NCT00463463 | PHASE3 | UNKNOWN | Zevalin and BEAM High-dose Chemotherapy Compared With BEAM Alone as Conditioning Regimen in Patients With Chemosensitive Relapse of Non-Hodgkin’s Lymphoma |
| NCT00491491 | PHASE3 | COMPLETED | Zevalin-beam for Aggressive Lymphoma |
| NCT00577161 | PHASE3 | WITHDRAWN | Fludarabine, Pixantrone and Rituximab vs Fludarabine and Rituximab forRelapsed or Refractory Indolent NHL |
| NCT00719472 | PHASE3 | COMPLETED | A Study of Rituximab Alternative Dosing Rate in Patients With Previously Untreated Diffuse Large B-cell or Follicular Non-Hodgkin’s Lymphoma (RATE) |
| NCT00877006 | PHASE3 | COMPLETED | Study of Bendamustine Hydrochloride and Rituximab (BR) Compared With R-CVP or R-CHOP in the First-Line Treatment of Patients With Advanced Indolent Non-Hodgkin’s Lymphoma (NHL) or Mantle Cell Lymphoma (MCL) - Referred to as the BRIGHT Study |
| NCT00877214 | PHASE3 | ACTIVE_NOT_RECRUITING | Significance of Duration of Maintenance Therapy With Rituximab in Non-Hodgkin Lymphomas |
| NCT00928018 | PHASE3 | COMPLETED | Tacrolimus/Sirolimus/Methotrexate vs Tacrolimus/Methotrexate or Cyclosporine/Mycophenolate Mofetil for GVHD Prophylaxis After Reduced Intensity Allogeneic Stem Cell Transplantation for Patients With Lymphoma |
| NCT00991211 | PHASE3 | COMPLETED | Bendamustine Plus Rituximab Versus CHOP Plus Rituximab |
Related Atlas pages
- Associated diseases: familial visceral amyloidosis, hypoproteinemia, hypercatabolic, variant ABeta2M amyloidosis, MHC class I deficiency, cutaneous melanoma
- Biomarker drugs (CIViC) (drugs whose response is associated with variants in this gene — CIViC predictive evidence, not targeting): Pembrolizumab
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): amyloidosis, hereditary systemic 6, cutaneous melanoma, familial visceral amyloidosis, hereditary spastic paraplegia 11, hypoproteinemia, hypercatabolic, MHC class I deficiency, non-Hodgkin lymphoma, variant ABeta2M amyloidosis