B3GALT1-AS1

Summary

B3GALT1-AS1 (B3GALT1 antisense RNA 1, HGNC:40089) is a long non-coding RNA gene on chromosome 2q24.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40089
Approved symbol	B3GALT1-AS1
Name	B3GALT1 antisense RNA 1
Location	2q24.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000235335
Ensembl biotype	lncRNA
Entrez	105616981
RNAcentral	URS00008120D7 — lncRNA, 940 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 15 — 15 lncRNA

ENST00000430546, ENST00000436982, ENST00000654994, ENST00000657553, ENST00000670221, ENST00000821873, ENST00000821874, ENST00000821875, ENST00000821876, ENST00000821877, ENST00000829688, ENST00000829689, ENST00000829690, ENST00000829691, ENST00000829692

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000430546 — 4 exons

Exon	Start	End
ENSE00001660850	167869740	167869980
ENSE00001732395	167900732	167900782
ENSE00003861346	167941109	167941178
ENSE00003872838	167814757	167815231

Expression profiles

Bgee: expression breadth ubiquitous, 113 present calls, max score 78.14.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.3732 / max 27.0833, expressed in 53 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
31697	0.3732	53

Top tissues by expression

113 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.14	silver quality
skeletal muscle tissue	UBERON:0001134	69.25	gold quality
colonic epithelium	UBERON:0000397	67.16	silver quality
ganglionic eminence	UBERON:0004023	66.32	gold quality
cortical plate	UBERON:0005343	65.76	gold quality
tonsil	UBERON:0002372	65.25	silver quality
bone marrow cell	CL:0002092	62.07	silver quality
lymph node	UBERON:0000029	60.85	gold quality
bone marrow	UBERON:0002371	58.59	gold quality
monocyte	CL:0000576	58.40	gold quality
hindlimb stylopod muscle	UBERON:0004252	56.63	gold quality
muscle of leg	UBERON:0001383	55.15	gold quality
gastrocnemius	UBERON:0001388	55.11	gold quality
smooth muscle tissue	UBERON:0001135	54.79	gold quality
liver	UBERON:0002107	54.67	gold quality
calcaneal tendon	UBERON:0003701	54.33	gold quality
prefrontal cortex	UBERON:0000451	54.14	gold quality
gall bladder	UBERON:0002110	54.06	gold quality
blood	UBERON:0000178	53.85	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	53.62	gold quality
duodenum	UBERON:0002114	53.48	gold quality
islet of Langerhans	UBERON:0000006	52.94	gold quality
right adrenal gland	UBERON:0001233	52.26	gold quality
right lobe of liver	UBERON:0001114	52.14	gold quality
endometrium	UBERON:0001295	51.06	gold quality
primary visual cortex	UBERON:0002436	50.67	gold quality
cerebellar cortex	UBERON:0002129	50.52	gold quality
cerebellar hemisphere	UBERON:0002245	50.40	gold quality
cortex of kidney	UBERON:0001225	50.34	gold quality
placenta	UBERON:0001987	49.38	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.63

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.