B3GALT2
gene geneOn this page
Also known as beta3Gal-T2
Summary
B3GALT2 (beta-1,3-galactosyltransferase 2, HGNC:917) is a protein-coding gene on chromosome 1q31.2, encoding Beta-1,3-galactosyltransferase 2 (O43825). Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal beta-N-acetylglucosamine (beta-GlcNAc) residue.
This gene is a member of the beta-1,3-galactosyltransferase (beta3GalT) gene family. This family encodes type II membrane-bound glycoproteins with diverse enzymatic functions using different donor substrates (UDP-galactose and UDP-N-acetylglucosamine) and different acceptor sugars (N-acetylglucosamine, galactose, N-acetylgalactosamine). The beta3GalT genes are distantly related to the Drosophila Brainiac gene and have the protein coding sequence contained in a single exon. The beta3GalT proteins also contain conserved sequences not found in the beta4GalT or alpha3GalT proteins. The carbohydrate chains synthesized by these enzymes are designated as type 1, whereas beta4GalT enzymes synthesize type 2 carbohydrate chains. The ratio of type 1:type 2 chains changes during embryogenesis. By sequence similarity, the beta3GalT genes fall into at least two groups: beta3GalT4 and 4 other beta3GalT genes (beta3GalT1-3, beta3GalT5). This gene encodes a protein that functions in N-linked glycoprotein glycosylation and shows strict donor substrate specificity for UDP-galactose.
Source: NCBI Gene 8707 — RefSeq curated summary.
At a glance
- GWAS associations: 3
- Clinical variants (ClinVar): 63 total — 6 pathogenic
- MANE Select transcript:
NM_003783
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:917 |
| Approved symbol | B3GALT2 |
| Name | beta-1,3-galactosyltransferase 2 |
| Location | 1q31.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | beta3Gal-T2 |
| Ensembl gene | ENSG00000162630 |
| Ensembl biotype | protein_coding |
| OMIM | 603018 |
| Entrez | 8707 |
Gene structure
Transcript identifiers
Ensembl transcripts: 2 — 2 protein_coding
ENST00000367434, ENST00000958440
RefSeq mRNA: 1 — MANE Select: NM_003783
NM_003783
CCDS: CCDS1383
Canonical transcript exons
ENST00000367434 — 2 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001444493 | 193178730 | 193181682 |
| ENSE00001444494 | 193186019 | 193186613 |
Expression profiles
Bgee: expression breadth ubiquitous, 200 present calls, max score 94.48.
FANTOM5 (CAGE): breadth broad, TPM avg 4.5848 / max 1076.5211, expressed in 500 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 16456 | 4.3564 | 489 |
| 16455 | 0.2284 | 115 |
Top tissues by expression
282 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cortical plate | UBERON:0005343 | 94.48 | gold quality |
| heart right ventricle | UBERON:0002080 | 94.11 | gold quality |
| endothelial cell | CL:0000115 | 89.05 | gold quality |
| myocardium | UBERON:0002349 | 88.00 | gold quality |
| prefrontal cortex | UBERON:0000451 | 87.86 | gold quality |
| cardiac ventricle | UBERON:0002082 | 86.23 | gold quality |
| heart left ventricle | UBERON:0002084 | 86.16 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 86.10 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 84.99 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 84.82 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 84.65 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 84.58 | gold quality |
| postcentral gyrus | UBERON:0002581 | 84.11 | gold quality |
| entorhinal cortex | UBERON:0002728 | 84.09 | gold quality |
| gall bladder | UBERON:0002110 | 83.77 | gold quality |
| frontal cortex | UBERON:0001870 | 83.75 | gold quality |
| neocortex | UBERON:0001950 | 83.32 | gold quality |
| cerebral cortex | UBERON:0000956 | 82.82 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 82.75 | gold quality |
| parietal lobe | UBERON:0001872 | 82.55 | gold quality |
| cardiac atrium | UBERON:0002081 | 81.72 | gold quality |
| primary visual cortex | UBERON:0002436 | 81.67 | gold quality |
| right atrium auricular region | UBERON:0006631 | 81.63 | gold quality |
| orbitofrontal cortex | UBERON:0004167 | 81.45 | gold quality |
| cingulate cortex | UBERON:0003027 | 81.36 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 81.35 | gold quality |
| heart | UBERON:0000948 | 81.26 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 81.20 | gold quality |
| apex of heart | UBERON:0002098 | 79.91 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 79.80 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-6386 | no | 166.69 |
| E-ANND-3 | no | 2.60 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
163 targeting B3GALT2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-33A-5P | 99.99 | 68.62 | 1055 |
| HSA-MIR-33B-5P | 99.99 | 68.58 | 1062 |
| HSA-MIR-4534 | 99.99 | 66.58 | 1907 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
| HSA-MIR-363-3P | 99.98 | 74.72 | 1821 |
| HSA-MIR-367-3P | 99.98 | 74.83 | 1819 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-433-3P | 99.98 | 69.37 | 1203 |
| HSA-LET-7F-2-3P | 99.98 | 70.98 | 2588 |
| HSA-MIR-1185-1-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-1185-2-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-507 | 99.97 | 70.11 | 1915 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-557 | 99.96 | 70.01 | 1640 |
| HSA-MIR-8082 | 99.95 | 67.27 | 1170 |
Cross-species orthologs
7 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | b3galt2 | ENSDARG00000102061 |
| mus_musculus | B3galt2 | ENSMUSG00000033849 |
| rattus_norvegicus | B3galt2 | ENSRNOG00000088477 |
| drosophila_melanogaster | brn | FBGN0000221 |
| caenorhabditis_elegans | WBGENE00000270 | |
| caenorhabditis_elegans | WBGENE00007096 | |
| caenorhabditis_elegans | WBGENE00017653 |
Paralogs (15): B3GNT7 (ENSG00000156966), B3GALNT2 (ENSG00000162885), B3GALNT1 (ENSG00000169255), B3GNT2 (ENSG00000170340), B3GALT1 (ENSG00000172318), B3GALT6 (ENSG00000176022), B3GNT4 (ENSG00000176383), B3GNT5 (ENSG00000176597), B3GNT8 (ENSG00000177191), B3GNT3 (ENSG00000179913), B3GALT5 (ENSG00000183778), B3GNT6 (ENSG00000198488), B3GALT9 (ENSG00000214654), B3GALT4 (ENSG00000235863), B3GNT9 (ENSG00000237172)
Protein
Protein identifiers
Beta-1,3-galactosyltransferase 2 — O43825 (reviewed: O43825)
Alternative names: UDP-galactose:2-acetamido-2-deoxy-D-glucose 3beta-galactosyltransferase 2
All UniProt accessions (1): O43825
UniProt curated annotations — full annotation on UniProt →
Function. Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal beta-N-acetylglucosamine (beta-GlcNAc) residue. Can also utilize substrates with a terminal galactose residue, albeit with lower efficiency. Involved in the biosynthesis of the carbohydrate moieties of glycolipids and glycoproteins. Inactive towards substrates with terminal alpha-N-acetylglucosamine (alpha-GlcNAc) or alpha-N-acetylgalactosamine (alpha-GalNAc) residues.
Subcellular location. Golgi apparatus membrane.
Tissue specificity. Detected in heart and brain.
Pathway. Protein modification; protein glycosylation.
Similarity. Belongs to the glycosyltransferase 31 family.
RefSeq proteins (1): NP_003774* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002659 | Glyco_trans_31 | Family |
| IPR045821 | B3GT2_N | Domain |
Pfam: PF01762, PF19341
Enzyme classification (BRENDA):
- EC 2.4.1.62 — ganglioside galactosyltransferase (BRENDA: 11 organisms, 28 substrates, 17 inhibitors, 13 Km, 3 kcat entries)
Substrate kinetics (BRENDA)
5 substrates with measured Km, best-characterized 5. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| N-ACETYL-D-GALACTOSAMINYL-(N-ACETYLNEURAMINYL)-D | 0.01–0.18 | 5 |
| UDP-GALACTOSE | 0.012–2.47 | 4 |
| GALNACALPHA-FCHASE | 1.68 | 1 |
| GALNACBETA-FCHASE | 3.18 | 1 |
| UDP-GAL | 1.11 | 1 |
Catalyzed reactions (Rhea), 3 shown:
- a beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-Glc-(1<->1)-Cer(d18:1(4E)) + UDP-alpha-D-galactose = a beta-D-Gal-(1->3)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-Glc-(1<->1’)-Cer(d18:1(4E)) + UDP + H(+) (RHEA:16045)
- a neolactoside IV(3)-beta-GlcNAc-nLc4Cer(d18:1(4E)) + UDP-alpha-D-galactose = a neolactoside IV(3)-beta-[Gal-beta-(1->3)-GlcNAc]-nLc4Cer(d18:1(4E)) + UDP + H(+) (RHEA:41936)
- an N-acetyl-beta-D-glucosaminyl derivative + UDP-alpha-D-galactose = a beta-D-galactosyl-(1->3)-N-acetyl-beta-D-glucosaminyl derivative + UDP + H(+) (RHEA:53432)
UniProt features (11 total): glycosylation site 5, topological domain 2, chain 1, sequence conflict 1, transmembrane region 1, region of interest 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O43825-F1 | 78.89 | 0.61 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Glycosylation sites (5): 75, 100, 119, 176, 226
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-9037629 | Lewis blood group biosynthesis |
| R-HSA-1430728 | Metabolism |
| R-HSA-71387 | Metabolism of carbohydrates and carbohydrate derivatives |
| R-HSA-9033658 | Blood group systems biosynthesis |
MSigDB gene sets: 220 (showing top):
RNGTGGGC_UNKNOWN, GOBP_OLIGOSACCHARIDE_METABOLIC_PROCESS, TGCGCANK_UNKNOWN, RORA1_01, GOBP_GLYCOLIPID_BIOSYNTHETIC_PROCESS, GCANCTGNY_MYOD_Q6, TAL1ALPHAE47_01, CAGCTG_AP4_Q5, EFC_Q6, GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS, GOBP_CERAMIDE_BIOSYNTHETIC_PROCESS, GOBP_SPHINGOLIPID_METABOLIC_PROCESS, NF1_Q6_01, GOBP_AMIDE_METABOLIC_PROCESS, GOBP_CARBOHYDRATE_DERIVATIVE_BIOSYNTHETIC_PROCESS
GO Biological Process (8): protein O-linked glycosylation (GO:0006493), glucosylceramide metabolic process (GO:0006678), glycoprotein biosynthetic process (GO:0009101), oligosaccharide biosynthetic process (GO:0009312), obsolete protein glycosylation (GO:0006486), lipid metabolic process (GO:0006629), galactosylceramide biosynthetic process (GO:0006682), carbohydrate derivative biosynthetic process (GO:1901137)
GO Molecular Function (5): N-acetyl-beta-D-glucosaminide beta-(1,3)-galactosyltransferase activity (GO:0008499), protein binding (GO:0005515), transferase activity (GO:0016740), glycosyltransferase activity (GO:0016757), hexosyltransferase activity (GO:0016758)
GO Cellular Component (3): Golgi membrane (GO:0000139), Golgi apparatus (GO:0005794), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| Blood group systems biosynthesis | 1 |
| Metabolism | 1 |
| Metabolism of carbohydrates and carbohydrate derivatives | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| glycoprotein biosynthetic process | 1 |
| glycosylceramide metabolic process | 1 |
| macromolecule biosynthetic process | 1 |
| glycoprotein metabolic process | 1 |
| carbohydrate derivative biosynthetic process | 1 |
| oligosaccharide metabolic process | 1 |
| carbohydrate biosynthetic process | 1 |
| primary metabolic process | 1 |
| galactosylceramide metabolic process | 1 |
| glycosphingolipid biosynthetic process | 1 |
| galactolipid biosynthetic process | 1 |
| ceramide biosynthetic process | 1 |
| biosynthetic process | 1 |
| carbohydrate derivative metabolic process | 1 |
| UDP-galactosyltransferase activity | 1 |
| beta-1,3-galactosyltransferase activity | 1 |
| binding | 1 |
| catalytic activity | 1 |
| transferase activity | 1 |
| glycosyltransferase activity | 1 |
| Golgi apparatus | 1 |
| bounding membrane of organelle | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
606 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| B3GALT2 | C1GALT1 | Q9NS00 | 846 |
| B3GALT2 | A4GALT | Q9NPC4 | 799 |
| B3GALT2 | WDR46 | O15213 | 764 |
| B3GALT2 | B4GALT1 | P15291 | 757 |
| B3GALT2 | RPS18 | P25232 | 644 |
| B3GALT2 | GLRX2 | Q9NS18 | 493 |
| B3GALT2 | ST6GALNAC6 | Q969X2 | 481 |
| B3GALT2 | EOGT | Q5NDL2 | 462 |
| B3GALT2 | CDC73 | Q6P1J9 | 453 |
| B3GALT2 | RO60 | P10155 | 444 |
| B3GALT2 | MAN2C1 | Q9NTJ4 | 441 |
| B3GALT2 | PAPOLG | Q9BWT3 | 429 |
| B3GALT2 | FAM229B | Q4G0N7 | 428 |
| B3GALT2 | TMEM130 | Q8N3G9 | 419 |
| B3GALT2 | CHST2 | Q9Y4C5 | 406 |
IntAct
6 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| B3GALT2 | GNPTAB | psi-mi:“MI:0915”(physical association) | 0.620 |
| B3GALT2 | LTN1 | psi-mi:“MI:0914”(association) | 0.530 |
| SNX22 | B3GALT2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| B3GALT2 | LRP5 | psi-mi:“MI:0914”(association) | 0.350 |
| B3GALT2 | LIG1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (20): CLN3 (Affinity Capture-MS), GNPTG (Affinity Capture-MS), MRS2 (Affinity Capture-MS), LRP5 (Affinity Capture-MS), IPO13 (Affinity Capture-MS), GNPTAB (Affinity Capture-MS), APOB (Affinity Capture-MS), LTN1 (Affinity Capture-MS), TMEM259 (Affinity Capture-MS), GNPTAB (Affinity Capture-MS), TMEM259 (Affinity Capture-MS), IPO13 (Affinity Capture-MS), LRP5 (Affinity Capture-MS), LTN1 (Affinity Capture-MS), GNPTAB (Affinity Capture-MS)
ESM2 similar proteins: A0A2C9JXL4, O43825, O54904, O54905, O75752, O93403, P79948, P79949, Q08BL3, Q0VC84, Q24342, Q5F3G7, Q5HZL5, Q5R5Y3, Q5RAL7, Q5XJP0, Q5YB40, Q66H69, Q6AY39, Q6DE15, Q6GNL1, Q6P3P5, Q6QMG1, Q76EC5, Q793U7, Q7JK24, Q7JK25, Q7JK26, Q7K237, Q7SYI5, Q7T3S5, Q864U6, Q864U8, Q8BGY6, Q8K0J2, Q8NFL0, Q920V1, Q99NB2, Q9BYG0, Q9JI67
Diamond homologs: A8MXE2, O43825, O54904, O54905, O75752, O88178, O96024, Q1RLK6, Q5HZL5, Q5JCS9, Q5R5Y3, Q5RAL7, Q66H69, Q6AY39, Q6DE15, Q6P3P5, Q793U7, Q7JK24, Q7JK25, Q7JK26, Q7T3S5, Q864U6, Q864U8, Q8BGY6, Q8R3I9, Q920V1, Q95US5, Q99NB2, Q9BYG0, Q9C0J1, Q9JI67, Q9MYM7, Q9N293, Q9N294, Q9N295, Q9Y2A9, Q9Y2C3, Q9Y5Z6, Q9Z0F0, Q3USF0
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
63 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 6 |
| Likely pathogenic | 0 |
| Uncertain significance | 50 |
| Likely benign | 5 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (6)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1455935 | NC_000001.10:g.(?193091331)(193172992_?)del | Pathogenic |
| 3391872 | GRCh37/hg19 1q31.1-31.3(chr1:190020202-193975983)x1 | Pathogenic |
| 560081 | Single allele | Pathogenic |
| 60078 | GRCh38/hg38 1q31.2(chr1:192567876-193180049)x1 | Pathogenic |
| 647462 | NC_000001.11:g.(?193122191)(193250722_?)del | Pathogenic |
| 830490 | NC_000001.11:g.(?193122201)(193250712_?)del | Pathogenic |
SpliceAI
206 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:193181432:T:TC | acceptor_gain | 0.9800 |
| 1:193181679:CATT:C | acceptor_gain | 0.9200 |
| 1:193181683:C:CC | acceptor_gain | 0.9100 |
| 1:193186014:CATA:C | donor_loss | 0.9000 |
| 1:193186015:ATACC:A | donor_loss | 0.9000 |
| 1:193186016:TA:T | donor_loss | 0.9000 |
| 1:193186017:A:C | donor_loss | 0.9000 |
| 1:193186013:ACAT:A | donor_loss | 0.8900 |
| 1:193186021:T:TA | donor_gain | 0.8900 |
| 1:193181432:T:C | acceptor_gain | 0.8700 |
| 1:193186017:ACCTT:A | donor_gain | 0.8600 |
| 1:193186018:CCTTC:C | donor_gain | 0.8600 |
| 1:193186012:GACAT:G | donor_loss | 0.8500 |
| 1:193186138:T:TA | donor_gain | 0.8400 |
| 1:193181681:TT:T | acceptor_gain | 0.7700 |
| 1:193181425:A:C | acceptor_gain | 0.7400 |
| 1:193186487:CCTCT:C | donor_gain | 0.7300 |
| 1:193186487:CCT:C | donor_gain | 0.7200 |
| 1:193186019:C:A | donor_loss | 0.7000 |
| 1:193186483:TTTAC:T | donor_loss | 0.6700 |
| 1:193186484:TTA:T | donor_loss | 0.6700 |
| 1:193186485:TA:T | donor_loss | 0.6700 |
| 1:193186487:CCTC:C | donor_loss | 0.6700 |
| 1:193186017:A:AC | donor_gain | 0.6500 |
| 1:193186018:C:CC | donor_gain | 0.6500 |
| 1:193186481:GATTT:G | donor_loss | 0.6400 |
| 1:193186482:ATTTA:A | donor_loss | 0.6400 |
| 1:193181424:CATGA:C | acceptor_gain | 0.6300 |
| 1:193186018:CCTT:C | donor_gain | 0.6200 |
| 1:193186488:C:G | donor_loss | 0.6000 |
AlphaMissense
2792 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:193180416:G:C | H383D | 1.000 |
| 1:193180418:G:A | S382F | 1.000 |
| 1:193180419:A:G | S382P | 1.000 |
| 1:193180436:T:C | Y376C | 1.000 |
| 1:193180471:G:C | F364L | 1.000 |
| 1:193180471:G:T | F364L | 1.000 |
| 1:193180473:A:G | F364L | 1.000 |
| 1:193180520:A:G | L348P | 1.000 |
| 1:193180522:A:C | C347W | 1.000 |
| 1:193180523:C:T | C347Y | 1.000 |
| 1:193180524:A:G | C347R | 1.000 |
| 1:193180529:C:T | G345E | 1.000 |
| 1:193180530:C:A | G345W | 1.000 |
| 1:193180530:C:G | G345R | 1.000 |
| 1:193180530:C:T | G345R | 1.000 |
| 1:193180540:A:C | D341E | 1.000 |
| 1:193180540:A:T | D341E | 1.000 |
| 1:193180541:T:A | D341V | 1.000 |
| 1:193180541:T:C | D341G | 1.000 |
| 1:193180541:T:G | D341A | 1.000 |
| 1:193180542:C:A | D341Y | 1.000 |
| 1:193180542:C:G | D341H | 1.000 |
| 1:193180544:T:A | E340V | 1.000 |
| 1:193180610:A:T | V318D | 1.000 |
| 1:193180616:C:T | G316D | 1.000 |
| 1:193180627:A:C | C312W | 1.000 |
| 1:193180628:C:T | C312Y | 1.000 |
| 1:193180630:G:C | F311L | 1.000 |
| 1:193180630:G:T | F311L | 1.000 |
| 1:193180632:A:G | F311L | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000589387 (1:193182683 T>C), RS1000875810 (1:193182865 A>G), RS1001207084 (1:193184517 A>G), RS1001880314 (1:193183180 T>A,C), RS1001911975 (1:193188593 T>C), RS1002453142 (1:193183900 T>C,G), RS1002754208 (1:193185488 C>A), RS1002888924 (1:193185735 A>G,T), RS1003222847 (1:193187155 A>G,T), RS1003733025 (1:193179722 T>A), RS1004720100 (1:193182983 T>C), RS1004976866 (1:193178381 A>C,G), RS1005214806 (1:193188348 T>C), RS1005250460 (1:193179344 G>A), RS1005408636 (1:193185408 T>C)
Disease associations
OMIM: gene MIM:603018 | disease phenotypes: MIM:608266, MIM:145001, MIM:145000
GenCC curated gene-disease
Mondo (3): parathyroid gland carcinoma (MONDO:0012004), hyperparathyroidism 2 with jaw tumors (MONDO:0007768), hyperparathyroidism 1 (MONDO:0007767)
Orphanet (3): Parathyroid carcinoma (Orphanet:143), Hyperparathyroidism-jaw tumor syndrome (Orphanet:99880), Familial isolated hyperparathyroidism (Orphanet:99879)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004490_15 | Cerebrospinal fluid t-tau:AB1-42 ratio | 3.000000e-10 |
| GCST004491_5 | Cerebrospinal fluid t-tau levels | 4.000000e-07 |
| GCST009391_1280 | Metabolite levels | 8.000000e-06 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007708 | t-tau:beta-amyloid 1-42 ratio measurement |
| EFO:0004760 | t-tau measurement |
| EFO:0010546 | uridine measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| C564166 | Hyperparathyroidism 1 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
25 total (human), top 25 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Doxorubicin | decreases expression | 2 |
| lead acetate | decreases expression | 1 |
| 2,5,2’,5’-tetrachlorobiphenyl | increases expression | 1 |
| mono-(2-ethylhexyl)phthalate | decreases expression | 1 |
| sodium arsenite | affects cotreatment, decreases expression, increases abundance | 1 |
| manganese chloride | increases abundance, affects cotreatment, decreases expression | 1 |
| triadimefon | decreases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| Grape Seed Proanthocyanidins | affects cotreatment, decreases expression | 1 |
| incobotulinumtoxinA | decreases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Arsenic | affects cotreatment, decreases expression, increases abundance | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Carbamazepine | affects expression | 1 |
| Catechin | affects cotreatment, decreases expression | 1 |
| Manganese | decreases expression, increases abundance, affects cotreatment | 1 |
| Rotenone | decreases expression | 1 |
| Valproic Acid | affects expression | 1 |
| 1-Methyl-4-phenylpyridinium | decreases expression | 1 |
| Aflatoxin B1 | decreases methylation | 1 |
| Antirheumatic Agents | increases expression | 1 |
| Lactic Acid | increases expression | 1 |
| Acrylamide | increases expression | 1 |
| Permethrin | decreases expression | 1 |
Clinical trials (associated diseases)
30 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00037518 | PHASE4 | COMPLETED | A Study of an Investigational Medication for Severe Primary Hyperparathyroidism or Parathyroid Cancer |
| NCT04574947 | PHASE4 | COMPLETED | Lidocaine And Neuromonitoring in Thyroid Surgery |
| NCT01460030 | PHASE3 | COMPLETED | An Intra-individual Titration Study of KRN1493 for the Treatment of Hypercalcemia in Patients With Parathyroid Carcinoma or Intractable Primary Hyperparathyroidism |
| NCT03280264 | PHASE3 | COMPLETED | Phase 3 Study of KHK7580 for the Treatment of Hypercalcemia in Patients With Parathyroid Carcinoma or Primary Hyperparathyroidism |
| NCT00001277 | PHASE2 | COMPLETED | Studies of Elevated Parathyroid Activity |
| NCT00896454 | PHASE2 | COMPLETED | Study of Denosumab in the Treatment of Hypercalcemia of Malignancy in Subjects With Elevated Serum Calcium |
| NCT02834013 | PHASE2 | ACTIVE_NOT_RECRUITING | Nivolumab and Ipilimumab in Treating Patients With Rare Tumors |
| NCT04106843 | PHASE2 | WITHDRAWN | Radioactive Drug (177Lu-DOTATATE) for the Treatment of Locally Advanced, Metastatic, or Unresectable Rare Endocrine Cancers |
| NCT06638931 | PHASE2 | RECRUITING | Agnostic Therapy in Rare Solid Tumors |
| NCT00004074 | PHASE1 | COMPLETED | Interleukin-12 and Trastuzumab in Treating Patients With Cancer That Has High Levels of HER2/Neu |
| NCT00580320 | PHASE1 | COMPLETED | Safety Study of Dacarbazine and Bortezomib in Melanoma and Soft Tissue Sarcoma |
| NCT07444723 | PHASE2/PHASE3 | RECRUITING | Accuracy of 18F-Fluorocholine PET/MR and NeuroEXPLORER PET/CT Imaging for Localization of Parathyroid Tumors |
| NCT00001394 | Not specified | COMPLETED | Using X-Ray Dye to Locate Hidden Parathyroid Tumors |
| NCT00068497 | Not specified | COMPLETED | Gefitinib in Treating Patients With Metastatic or Unresectable Head and Neck Cancer or Non-Small Cell Lung Cancer |
| NCT00639405 | Not specified | TERMINATED | Evaluation of MRI and SPECT Fusion Software to Localize Parathyroid Adenomas |
| NCT01005654 | Not specified | RECRUITING | Prospective Comprehensive Molecular Analysis of Endocrine Neoplasms |
| NCT01776385 | Not specified | COMPLETED | The ISET (Isolation by Size of Epithelial Tumor Cells) and the CellSearch Methods in Malignant Pleural Mesothelioma |
| NCT03039439 | Not specified | RECRUITING | Molecular and Immunohistochemical Profiling of Tumors in Patients With Parathyroid Tumors |
| NCT03046524 | Not specified | COMPLETED | Parathyroid Cancer Versus Atypical Parathyroid Neoplasm; Investigating Their Clinical Characteristics and Biological Behavior |
| NCT04028479 | Not specified | COMPLETED | The Registry of Oncology Outcomes Associated With Testing and Treatment |
| NCT04299425 | Not specified | COMPLETED | Evaluating Impact of NIRAF Detection for Identifying Parathyroid Glands During Parathyroidectomy |
| NCT04969926 | Not specified | RECRUITING | Natural History Study of Parathyroid Disorders |
| NCT05022641 | Not specified | COMPLETED | Evaluating Impact of Near Infrared Autofluorescence (NIRAF) Detection for Identifying Parathyroid Glands During Parathyroidectomy |
| NCT05152927 | Not specified | COMPLETED | Near Infrared Autofluorescence (NIRAF) Detection for Identifying Parathyroid Glands During Parathyroidectomy |
| NCT05556499 | Not specified | NOT_YET_RECRUITING | The Bone-parathyroid Crosstalk in Primary Hyperparathyroidism |
| NCT05789680 | Not specified | UNKNOWN | European Multicentric Study on Parathyroid Carcinoma |
| NCT06645951 | Not specified | RECRUITING | Institution of an Italian Multicenter Database of Patients with Parathyroid Carcinoma or Atypical Parathyroid Adenoma |
| NCT06852144 | Not specified | ENROLLING_BY_INVITATION | PET-TC in Thyroid Evaluation |
| NCT07043010 | Not specified | NOT_YET_RECRUITING | WHITE CAP: Intra-operative Parathyroid Tissue Sensor (PTS)-Guided Assessment of Parathyroid Viability and Surgical Decision-Making |
| NCT07475780 | Not specified | RECRUITING | Radiofrequency Ablation For Recurrent Parathyroid Carcinoma |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): hyperparathyroidism 1, hyperparathyroidism 2 with jaw tumors, parathyroid gland carcinoma