B3GAT1-DT

Summary

B3GAT1-DT (B3GAT1 divergent transcript, HGNC:27449) is a long non-coding RNA gene on chromosome 11q25.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27449
Approved symbol	B3GAT1-DT
Name	B3GAT1 divergent transcript
Location	11q25
Locus type	RNA, long non-coding
Status	Approved
Aliases	LOC283177, AP004608.1
Ensembl gene	ENSG00000255545
Ensembl biotype	lncRNA
Entrez	283177
RNAcentral	URS000075E9E3 — lncRNA, 2737 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 29 — 28 lncRNA, 1 retained_intron

ENST00000528482, ENST00000531319, ENST00000532886, ENST00000533390, ENST00000653028, ENST00000657630, ENST00000661684, ENST00000777348, ENST00000777349, ENST00000777350, ENST00000777351, ENST00000777352, ENST00000777353, ENST00000777354, ENST00000777355, ENST00000777356, ENST00000777357, ENST00000777358, ENST00000777359, ENST00000777360, ENST00000777361, ENST00000777362, ENST00000777363, ENST00000777364, ENST00000777365, ENST00000777366, ENST00000777367, ENST00000777368, ENST00000777369

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000528482 — 5 exons

Exon	Start	End
ENSE00002166032	134466185	134467615
ENSE00002179744	134482627	134482730
ENSE00002186560	134485962	134487915
ENSE00002189233	134480845	134480911
ENSE00002437128	134467865	134467987

Expression profiles

Bgee: expression breadth ubiquitous, 145 present calls, max score 92.76.

Top tissues by expression

219 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	92.76	gold quality
mucosa of transverse colon	UBERON:0004991	85.12	gold quality
right lobe of liver	UBERON:0001114	84.12	gold quality
cortex of kidney	UBERON:0001225	79.76	gold quality
tendon of biceps brachii	UBERON:0008188	79.24	gold quality
mucosa of paranasal sinus	UBERON:0005030	79.16	gold quality
right uterine tube	UBERON:0001302	78.85	gold quality
buccal mucosa cell	CL:0002336	78.26	silver quality
transverse colon	UBERON:0001157	78.23	gold quality
body of stomach	UBERON:0001161	78.20	gold quality
metanephros cortex	UBERON:0010533	78.14	gold quality
cerebellar vermis	UBERON:0004720	78.09	gold quality
adult mammalian kidney	UBERON:0000082	78.01	gold quality
parotid gland	UBERON:0001831	75.34	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	75.14	gold quality
kidney	UBERON:0002113	75.07	gold quality
liver	UBERON:0002107	75.06	gold quality
stomach	UBERON:0000945	75.04	gold quality
rectum	UBERON:0001052	74.81	gold quality
hindlimb stylopod muscle	UBERON:0004252	73.62	gold quality
fundus of stomach	UBERON:0001160	73.35	gold quality
endometrium	UBERON:0001295	73.21	gold quality
bronchial epithelial cell	CL:0002328	72.70	gold quality
metanephros	UBERON:0000081	72.69	gold quality
colonic epithelium	UBERON:0000397	72.58	gold quality
bronchus	UBERON:0002185	72.24	gold quality
small intestine	UBERON:0002108	71.17	gold quality
duodenum	UBERON:0002114	71.11	gold quality
small intestine Peyer’s patch	UBERON:0003454	71.10	gold quality
skeletal muscle tissue	UBERON:0001134	70.76	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 2.

Experiment	Marker?	Max mean expression
E-CURD-119	yes	33.37
E-ANND-3	yes	3.84

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.