BACH1-IT1

Summary

BACH1-IT1 (BACH1 intronic transcript 1, HGNC:40006) is a long non-coding RNA gene on chromosome 21q21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40006
Approved symbol	BACH1-IT1
Name	BACH1 intronic transcript 1
Location	21q21.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248476
Ensembl biotype	lncRNA
RNAcentral	URS000030B05A — lncRNA, 821 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000504298

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000504298 — 4 exons

Exon	Start	End
ENSE00002020319	29361552	29361894
ENSE00002028160	29352579	29352663
ENSE00002047876	29361031	29361243
ENSE00002057091	29351634	29351813

Expression profiles

Bgee: expression breadth ubiquitous, 153 present calls, max score 95.82.

Top tissues by expression

250 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	95.82	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.98	gold quality
sural nerve	UBERON:0015488	74.54	gold quality
bone marrow cell	CL:0002092	74.51	gold quality
monocyte	CL:0000576	74.24	gold quality
leukocyte	CL:0000738	73.16	gold quality
gastrocnemius	UBERON:0001388	70.53	gold quality
muscle of leg	UBERON:0001383	69.23	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	67.89	gold quality
colonic epithelium	UBERON:0000397	67.27	silver quality
kidney epithelium	UBERON:0004819	66.82	gold quality
ventricular zone	UBERON:0003053	65.85	gold quality
stromal cell of endometrium	CL:0002255	65.82	gold quality
cortical plate	UBERON:0005343	65.61	gold quality
right testis	UBERON:0004534	65.35	gold quality
epithelial cell of pancreas	CL:0000083	65.24	gold quality
ganglionic eminence	UBERON:0004023	64.92	gold quality
left testis	UBERON:0004533	64.41	gold quality
blood	UBERON:0000178	64.09	gold quality
testis	UBERON:0000473	63.58	gold quality
adrenal tissue	UBERON:0018303	62.52	gold quality
hindlimb stylopod muscle	UBERON:0004252	62.07	gold quality
granulocyte	CL:0000094	61.90	gold quality
secondary oocyte	CL:0000655	61.57	gold quality
islet of Langerhans	UBERON:0000006	61.18	gold quality
tibialis anterior	UBERON:0001385	61.09	silver quality
calcaneal tendon	UBERON:0003701	61.00	gold quality
amniotic fluid	UBERON:0000173	60.96	gold quality
endothelial cell	CL:0000115	60.26	gold quality
tonsil	UBERON:0002372	60.07	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.63

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.