BARX1-DT

Summary

BARX1-DT (BARX1 divergent transcript, HGNC:50673) is a long non-coding RNA gene on chromosome 9q22.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50673
Approved symbol	BARX1-DT
Name	BARX1 divergent transcript
Location	9q22.32
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000235601
Ensembl biotype	lncRNA
Entrez	101928040
RNAcentral	URS0000A766B2 — lncRNA, 1460 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000453045, ENST00000454594, ENST00000766964, ENST00000766965, ENST00000766966, ENST00000766967, ENST00000766968

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000453045 — 2 exons

Exon	Start	End
ENSE00001673271	93955834	93956868
ENSE00001691031	93957513	93957922

Expression profiles

Bgee: expression breadth broad, 55 present calls, max score 87.74.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2350 / max 33.7819, expressed in 78 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
97439	0.1552	59
97440	0.0798	32

Top tissues by expression

55 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
mucosa of stomach	UBERON:0001199	87.74	gold quality
fundus of stomach	UBERON:0001160	75.36	gold quality
body of stomach	UBERON:0001161	73.26	gold quality
stomach	UBERON:0000945	72.47	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	71.87	gold quality
adenohypophysis	UBERON:0002196	70.16	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	59.95	gold quality
blood	UBERON:0000178	59.72	gold quality
bone marrow	UBERON:0002371	59.29	gold quality
monocyte	CL:0000576	58.60	gold quality
esophagus	UBERON:0001043	56.73	gold quality
muscle layer of sigmoid colon	UBERON:0035805	56.59	gold quality
lower esophagus muscularis layer	UBERON:0035833	56.04	gold quality
omental fat pad	UBERON:0010414	55.77	gold quality
pituitary gland	UBERON:0000007	55.24	gold quality
left coronary artery	UBERON:0001626	55.13	gold quality
urinary bladder	UBERON:0001255	54.77	gold quality
esophagus mucosa	UBERON:0002469	54.44	gold quality
tonsil	UBERON:0002372	52.62	gold quality
ascending aorta	UBERON:0001496	52.41	gold quality
right lobe of liver	UBERON:0001114	52.27	gold quality
colon	UBERON:0001155	52.14	gold quality
skin of abdomen	UBERON:0001416	51.55	gold quality
transverse colon	UBERON:0001157	51.13	gold quality
gastrocnemius	UBERON:0001388	51.13	gold quality
body of pancreas	UBERON:0001150	50.08	gold quality
tibial artery	UBERON:0007610	49.71	gold quality
right frontal lobe	UBERON:0002810	49.59	gold quality
subcutaneous adipose tissue	UBERON:0002190	49.58	gold quality
prostate gland	UBERON:0002367	49.17	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.65

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.