BCAR3-AS1

Summary

BCAR3-AS1 (BCAR3 antisense RNA 1, HGNC:40093) is a long non-coding RNA gene on chromosome 1p22.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40093
Approved symbol	BCAR3-AS1
Name	BCAR3 antisense RNA 1
Location	1p22.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	TP53LC19
Ensembl gene	ENSG00000224093
Ensembl biotype	lncRNA
Entrez	100129046
RNAcentral	URS0000759DCC — lncRNA, 1562 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000412628, ENST00000417401, ENST00000427243, ENST00000431770, ENST00000446684, ENST00000703038, ENST00000747703, ENST00000747704

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000412628 — 2 exons

Exon	Start	End
ENSE00001700336	93594385	93594449
ENSE00001731850	93600656	93600762

Expression profiles

Bgee: expression breadth ubiquitous, 130 present calls, max score 92.64.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.6852 / max 95.2700, expressed in 113 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
4067	0.4152	87
4068	0.1260	46
4070	0.0816	17
4069	0.0623	22

Top tissues by expression

130 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
rectum	UBERON:0001052	92.64	gold quality
duodenum	UBERON:0002114	92.01	gold quality
right lobe of liver	UBERON:0001114	91.43	gold quality
islet of Langerhans	UBERON:0000006	90.63	gold quality
mucosa of transverse colon	UBERON:0004991	89.62	gold quality
liver	UBERON:0002107	88.05	gold quality
right uterine tube	UBERON:0001302	86.34	gold quality
pancreas	UBERON:0001264	84.30	gold quality
transverse colon	UBERON:0001157	83.65	gold quality
small intestine	UBERON:0002108	83.20	gold quality
small intestine Peyer’s patch	UBERON:0003454	82.74	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.67	gold quality
sural nerve	UBERON:0015488	82.21	gold quality
body of pancreas	UBERON:0001150	81.48	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	80.37	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	79.59	gold quality
adult mammalian kidney	UBERON:0000082	79.09	gold quality
kidney	UBERON:0002113	78.94	gold quality
stomach	UBERON:0000945	78.29	gold quality
body of stomach	UBERON:0001161	77.97	gold quality
intestine	UBERON:0000160	77.73	gold quality
metanephros cortex	UBERON:0010533	77.34	gold quality
gall bladder	UBERON:0002110	76.63	gold quality
cortex of kidney	UBERON:0001225	76.13	gold quality
corpus callosum	UBERON:0002336	75.54	gold quality
colonic epithelium	UBERON:0000397	75.36	gold quality
colon	UBERON:0001155	75.32	gold quality
fundus of stomach	UBERON:0001160	75.24	gold quality
adrenal tissue	UBERON:0018303	74.40	gold quality
fallopian tube	UBERON:0003889	74.03	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.35

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.