BCAT1-DT

Summary

BCAT1-DT (BCAT1 divergent transcript, HGNC:54396) is a long non-coding RNA gene on chromosome 12p12.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54396
Approved symbol	BCAT1-DT
Name	BCAT1 divergent transcript
Location	12p12.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	lnc-BCAT1
Ensembl gene	ENSG00000255921
Ensembl biotype	lncRNA
Entrez	139281667
RNAcentral	URS000042B89B — lncRNA, 728 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000546353, ENST00000729875

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000546353 — 4 exons

Exon	Start	End
ENSE00002226631	24960054	24960158
ENSE00002232994	24957127	24957240
ENSE00002271495	24957934	24958274
ENSE00002303950	24949163	24949330

Expression profiles

Bgee: expression breadth broad, 91 present calls, max score 75.64.

Top tissues by expression

91 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.64	gold quality
bone marrow cell	CL:0002092	63.23	silver quality
stromal cell of endometrium	CL:0002255	56.06	gold quality
gall bladder	UBERON:0002110	55.05	gold quality
islet of Langerhans	UBERON:0000006	54.97	gold quality
bone marrow	UBERON:0002371	54.32	gold quality
pancreas	UBERON:0001264	54.26	gold quality
vermiform appendix	UBERON:0001154	53.94	gold quality
body of pancreas	UBERON:0001150	53.32	gold quality
descending thoracic aorta	UBERON:0002345	51.48	gold quality
placenta	UBERON:0001987	51.37	gold quality
adrenal tissue	UBERON:0018303	51.14	gold quality
monocyte	CL:0000576	50.87	silver quality
blood	UBERON:0000178	50.47	silver quality
lymph node	UBERON:0000029	48.91	silver quality
calcaneal tendon	UBERON:0003701	48.64	silver quality
prefrontal cortex	UBERON:0000451	48.16	silver quality
myometrium	UBERON:0001296	47.81	gold quality
endometrium	UBERON:0001295	46.64	gold quality
right lobe of liver	UBERON:0001114	46.27	silver quality
adrenal gland	UBERON:0002369	45.97	gold quality
cerebellum	UBERON:0002037	45.33	silver quality
cerebellar hemisphere	UBERON:0002245	45.09	silver quality
left adrenal gland cortex	UBERON:0035825	45.08	silver quality
minor salivary gland	UBERON:0001830	45.00	gold quality
tonsil	UBERON:0002372	44.90	silver quality
adult mammalian kidney	UBERON:0000082	44.80	gold quality
left adrenal gland	UBERON:0001234	44.72	gold quality
substantia nigra	UBERON:0002038	44.67	gold quality
right ovary	UBERON:0002118	44.62	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.39

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.