BCL10
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Also known as CARMENCIPERmE10c-E10CLAP
Summary
BCL10 (BCL10 immune signaling adaptor, HGNC:989) is a protein-coding gene on chromosome 1p22.3, encoding B-cell lymphoma/leukemia 10 (O95999). Plays a key role in both adaptive and innate immune signaling by bridging CARD domain-containing proteins to immune activation.
This gene was identified by its translocation in a case of mucosa-associated lymphoid tissue (MALT) lymphoma. The protein encoded by this gene contains a caspase recruitment domain (CARD), and has been shown to induce apoptosis and to activate NF-kappaB. This protein is reported to interact with other CARD domain containing proteins including CARD9, 10, 11 and 14, which are thought to function as upstream regulators in NF-kappaB signaling. This protein is found to form a complex with MALT1, a protein encoded by another gene known to be translocated in MALT lymphoma. MALT1 and this protein are thought to synergize in the activation of NF-kappaB, and the deregulation of either of them may contribute to the same pathogenetic process that leads to the malignancy. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 8915 — RefSeq curated summary.
At a glance
- Gene–disease (curated): immunodeficiency 37 (Definitive, ClinGen)
- GWAS associations: 2
- Clinical variants (ClinVar): 145 total — 20 pathogenic, 1 likely-pathogenic
- Phenotypes (HPO): 38
- Cancer driver (intOGen): loss-of-function (tumor-suppressor-like) across 2 cancer types
- MANE Select transcript:
NM_003921
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:989 |
| Approved symbol | BCL10 |
| Name | BCL10 immune signaling adaptor |
| Location | 1p22.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CARMEN, CIPER, mE10, c-E10, CLAP |
| Ensembl gene | ENSG00000142867 |
| Ensembl biotype | protein_coding |
| OMIM | 603517 |
| Entrez | 8915 |
Gene structure
Transcript identifiers
Ensembl transcripts: 6 — 3 protein_coding, 2 protein_coding_CDS_not_defined, 1 nonsense_mediated_decay
ENST00000620248, ENST00000648566, ENST00000649060, ENST00000649434, ENST00000650582, ENST00000913809
RefSeq mRNA: 2 — MANE Select: NM_003921
NM_001320715, NM_003921
CCDS: CCDS704, CCDS90994
Canonical transcript exons
ENST00000648566 — 3 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000956833 | 85270618 | 85270906 |
| ENSE00001427973 | 85265776 | 85267982 |
| ENSE00003838709 | 85276296 | 85276632 |
Expression profiles
Bgee: expression breadth ubiquitous, 280 present calls, max score 97.45.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 37.0149 / max 460.4234, expressed in 1814 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 13027 | 28.4322 | 1811 |
| 13024 | 4.4665 | 1507 |
| 13026 | 3.7562 | 1549 |
| 13025 | 0.3600 | 168 |
Top tissues by expression
291 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| esophagus squamous epithelium | UBERON:0006920 | 97.45 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 96.97 | gold quality |
| squamous epithelium | UBERON:0006914 | 96.86 | gold quality |
| oocyte | CL:0000023 | 96.75 | gold quality |
| colonic mucosa | UBERON:0000317 | 96.63 | gold quality |
| gingival epithelium | UBERON:0001949 | 96.50 | gold quality |
| secondary oocyte | CL:0000655 | 96.43 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 96.31 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 95.63 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 95.27 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 94.81 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 94.71 | gold quality |
| amniotic fluid | UBERON:0000173 | 94.69 | gold quality |
| gingiva | UBERON:0001828 | 94.34 | gold quality |
| tibia | UBERON:0000979 | 93.39 | gold quality |
| jejunal mucosa | UBERON:0000399 | 93.22 | gold quality |
| oral cavity | UBERON:0000167 | 92.85 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 92.69 | gold quality |
| visceral pleura | UBERON:0002401 | 92.59 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 92.37 | gold quality |
| upper leg skin | UBERON:0004262 | 92.18 | gold quality |
| endothelial cell | CL:0000115 | 91.96 | gold quality |
| rectum | UBERON:0001052 | 91.87 | gold quality |
| pancreatic ductal cell | CL:0002079 | 91.29 | gold quality |
| pleura | UBERON:0000977 | 91.25 | gold quality |
| parietal pleura | UBERON:0002400 | 91.14 | gold quality |
| calcaneal tendon | UBERON:0003701 | 91.13 | gold quality |
| hair follicle | UBERON:0002073 | 90.83 | gold quality |
| cervix epithelium | UBERON:0004801 | 90.82 | gold quality |
| nephron tubule | UBERON:0001231 | 90.68 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-83139 | yes | 10.76 |
| E-ENAD-27 | yes | 6.63 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): NFKB, RELA, RELB, STAT5A
miRNA regulators (miRDB)
91 targeting BCL10, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-33A-5P | 99.99 | 68.62 | 1055 |
| HSA-MIR-33B-5P | 99.99 | 68.58 | 1062 |
| HSA-MIR-3667-3P | 99.99 | 67.17 | 1636 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-9-3P | 99.96 | 70.88 | 2068 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
Literature-anchored findings (GeneRIF, showing 40)
- vimplicated in apoptosis, and it has been suggested that mutated forms gain oncogenic activity. The occurrence of genomic BCL10 mutations in gastric MALT-type lymphomas was investigated. (PMID:11830492)
- Mutations, relatively common in lymphomas, are extremely rare in malignant cartilaginous tumors. (PMID:11836626)
- REVIEW: Genetic alterations involving BCL10 underlying the pathogenesis of MALT lymphoma (PMID:11960389)
- There is a lack of BCL10 mRNA mutation in lymphold malignancies. (PMID:12017308)
- association of mutations with aberrant BCL10 localization in the nucleus in nasal NK/T-cell lymphomas (PMID:14523480)
- Bcl10 is post-translationally modified by Rip2 and has a role in T-cell signaling (PMID:14638696)
- Nuclear expression of BCL10 is unlikely to correlate with the API2-MALT1 fusion gene in ocular adnexal MALT lymphoma. (PMID:14674990)
- Bcl10 targets NEMO for lysine-63-linked ubiquitination (PMID:14695475)
- Together, these findings suggest that Bcl10 nuclear expression may modulate gene expression and Bcl10 is a potential transcriptional activator apart from its traditional roles that have been found. (PMID:15207693)
- BinCard inhibits BCL10-mediated activation of NF-kappa B. (PMID:15637807)
- The ability of Bcl10 expression to prevent B-cell antigen receptor-induced growth arrest and apoptosis of WEHI-231 cells was dependent on NF-kappaB activation. (PMID:15878976)
- nucleocytoplasmic shuttling of MALT1 and BCL10 complex may indicate that these molecules are involved not only in the nuclear factor kappaB (NF-kappaB) pathway but also in other biologic functions in lymphocytes (PMID:16123224)
- Accumulation of BCL10 at the perinuclear region is required for the BCL10-mediated NF-kappa B activation. (PMID:16127295)
- TNFalpha up-regulates the expression of Bcl10 and induces a fraction of Bcl10 nuclear translocation in human breast cancer cells: Akt1, activated by TNFalpha, phosphorylates Bcl10 at Ser218 and Ser231 which complexes with Bcl3 to enter the nucleus (PMID:16280327)
- BCL10 immunohistochemistry is a simple technique to identify those MALT lymphoma cases with an underlying genetic aberration. (PMID:16341151)
- results reveal a physiological function of cellular inhibitor of apoptosis 2, identify Bcl10 upregulation as a unifying molecular mechanism for mucosa-associated lymphoid tissue lymphomas. (PMID:16775419)
- Heterogeneous BCL10 gene amplification in diffuse large B cell lymphoma cells. (PMID:16785131)
- Data show that IRAK-1 acts as the essential upstream adaptor that recruits BCL10 to the TLR4 signaling complex and mediates signaling to NF-kappaB through the BCL10-MALT1-TRAF6-TAK1 cascade. (PMID:16831874)
- CARMA3/Bcl10/MALT1-dependent NF-kappaB activation mediates angiotensin II-responsive inflammatory signaling in hepatocytes. (PMID:17101977)
- Bcl10 is a key signaling component mediating NF-kappaB activation induced by GPCRs in nonlymphoid cells. (PMID:17179215)
- BCL10 nuclear expression was present in four of 17 cases od MALT lymphoma. (PMID:17199743)
- Mutants of Bcl10 in the IKK phosphorylation site are resistant to degradation (PMID:17213322)
- These results point to a key role of Bcl10 in F-actin-dependent immune responses of T cells and monocytes/macrophages. (PMID:17371994)
- These findings demonstrate that phosphorylation of Bcl10 at S138 down-regulates Bcl10 protein levels and thus negatively regulates T-cell receptor-mediated NF-kappaB activation. (PMID:17502353)
- Identify Bcl10 as a mediator of LPS-induced activation of NK-kappaB and IL-8. (PMID:17540779)
- Epo has a role in reducing expression of apoptosis-related proteins Bcl-2 and Bcl-10 in ovarian cancer cells (PMID:17893875)
- BCL10 and MALT1 might not only reflect the lymphocytic origin of H-RS cells, but autonomous activity of this crippled antigen receptor pathway might confer NFB activity and apoptosis resistance 9 at least in those cases of HL expressing wild-type IB. (PMID:18231929)
- Toll-like receptor 4 mediates induction of the Bcl10-NFkappaB-interleukin-8 inflammatory pathway by carrageenan (PMID:18252714)
- The regulated ubiquitination of Bcl10 and its recognition by NEMO are a critical link between the Carma1-Bcl10-MALT1 complex, IkappaB kinase recruitment, and NF-kappaB activation. (PMID:18287044)
- A novel mutation of Bc1-10 gene in ocular adnexal MALT lymphoma was detected in Chinese patients. (PMID:18307945)
- The bcl-10 staining was most intense in MALT lymphoma of ocular adnexa (PMID:18346354)
- results further define the molecular mechanisms that control activation of NF-kappaB and reveal a function for A20 in the regulation of CARMA and BCL10 activity in lymphoid and non-lymphoid cells (PMID:18349075)
- Data show that the protein kinase C-responsive inhibitory domain of CARD11 functions in NF-kappaB activation to regulate the association of multiple signaling cofactors that differentially depend on Bcl10 and MALT1 for association. (PMID:18625728)
- analysis of protein domains that mediate interaction between Bcl10 and MALT1 (PMID:18806265)
- BCL10 nuclear expression and t(11;18)(q21;q21)-positive gastric MALT lymphomas are likely to be related to a failure to respond to H. pylori eradication in Chinese patients. (PMID:18949449)
- BCL10 nuclear expression is common in ocular adnexal mucosa-associated lymphoid tissue lymphomas. (PMID:19035248)
- components of the CBM complex, Carma3, Bcl10, and Malt1 are key mediators of the CXCL8/IL8-induced NFkappaB activation and VEGF up-regulation. (PMID:19112107)
- data suggest that this inherent instability of MALT1-API2 prevents its accumulation and renders a potential effect on MALT lymphoma development via destabilization of BCL10 unlikely (PMID:19279678)
- Bcl-10 is expressed in peripheral T-cell lymphomas, correlates with PKC theta and Pp65(Ser536) expression and seems to be associated with better survival. (PMID:19309400)
- T-cell activation triggers the recruitment of the COP9 signalosome (CSN) to the Carma1-Bcl10-Malt1 (CBM) complex, and CSN downregulation impairs TCR-induced IKK activation. (PMID:19444310)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Bcl10 | ENSMUSG00000028191 |
| rattus_norvegicus | Bcl10 | ENSRNOG00000042389 |
Protein
Protein identifiers
B-cell lymphoma/leukemia 10 — O95999 (reviewed: O95999)
Alternative names: B-cell CLL/lymphoma 10, CARD-containing molecule enhancing NF-kappa-B, CARD-like apoptotic protein, CED-3/ICH-1 prodomain homologous E10-like regulator, Cellular homolog of vCARMEN, Cellular-E10, Mammalian CARD-containing adapter molecule E10
All UniProt accessions (3): O95999, A0A087WWW9, A0A3B3ISX2
UniProt curated annotations — full annotation on UniProt →
Function. Plays a key role in both adaptive and innate immune signaling by bridging CARD domain-containing proteins to immune activation. Acts by channeling adaptive and innate immune signaling downstream of CARD domain-containing proteins CARD9, CARD11 and CARD14 to activate NF-kappa-B and MAP kinase p38 (MAPK11, MAPK12, MAPK13 and/or MAPK14) pathways which stimulate expression of genes encoding pro-inflammatory cytokines and chemokines. Recruited by activated CARD domain-containing proteins: homooligomerized CARD domain-containing proteins form a nucleating helical template that recruits BCL10 via CARD-CARD interaction, thereby promoting polymerization of BCL10, subsequent recruitment of MALT1 and formation of a CBM complex. This leads to activation of NF-kappa-B and MAP kinase p38 (MAPK11, MAPK12, MAPK13 and/or MAPK14) pathways which stimulate expression of genes encoding pro-inflammatory cytokines and chemokines. Activated by CARD9 downstream of C-type lectin receptors; CARD9-mediated signals are essential for antifungal immunity. Activated by CARD11 downstream of T-cell receptor (TCR) and B-cell receptor (BCR). Promotes apoptosis, pro-caspase-9 maturation and activation of NF-kappa-B via NIK and IKK.
Subunit / interactions. Homomultimer; homooligomerized following recruitment by CARD domain-containing proteins that form a nucleating helical template that recruits BCL10 via CARD-CARD interaction. Self-associates by CARD-CARD interaction and interacts with other CARD-proteins such as CARD9, CARD10, CARD11 and CARD14. Forms a complex with CARD14 and MALT1; resulting in the formation of a CBM (CARD14-BCL10-MALT1) complex. Forms a complex with CARD11 and MALT1; resulting in the formation of a CBM (CARD11-BCL10-MALT1) complex. Forms a complex with CARD9 and MALT1; resulting in the formation of a CBM (CARD9-BCL10-MALT1) complex. Found in a membrane raft complex, at least composed of BCL10, CARD11, DPP4 and IKBKB. Binds caspase-9 with its C-terminal domain. Interacts with TRAF2 and BIRC2/c-IAP2. Interacts with PELI2 and SOCS3; these interactions may be mutually exclusive.
Subcellular location. Cytoplasm. Perinuclear region. Membrane raft.
Tissue specificity. Ubiquitous.
Post-translational modifications. Phosphorylated. Phosphorylation results in dissociation from TRAF2 and binding to BIRC2/c-IAP2. Phosphorylated by IKBKB/IKKB. Ubiquitinated via both ‘Lys-63’-linked and linear (‘Met-1’-linked) polyubiquitin chains in response to T-cell receptor (TCR) activation. Ubiquitination is recognized by IKBKG/NEMO, the regulatory subunit of I-kappa-B kinase (IKK), and is required for TCR-induced NF-kappa-B activation. Linear ubiquitination at Lys-17, Lys-31 and Lys-63 is mediated by RNF31/HOIP; linear ubiquitination is recognized with much higher affinity than ‘Lys-63’-linked ubiquitin by IKBKG/NEMO. CARD11 is required for linear ubiquitination by HOIP by promoting the targeting of BCL10 to RNF31/HOIP. Proteolytically cleaved by MALT1; required for T-cell activation.
Disease relevance. A chromosomal aberration involving BCL10 is recurrent in low-grade mucosa-associated lymphoid tissue (MALT lymphoma). Translocation t(1;14)(p22;q32). Although the BCL10/IgH translocation leaves the coding region of BCL10 intact, frequent BCL10 mutations could be attributed to the Ig somatic hypermutation mechanism resulting in nucleotide transitions. Immunodeficiency 37 (IMD37) [MIM:616098] A form of primary combined immunodeficiency, a group of disorders characterized by severe recurrent infections, with normal numbers or an absence of T and B lymphocytes, and impaired cellular and humoral immunity. IMD37 is characterized by hypogammaglobulinemia without lymphopenia, but with profoundly reduced memory B cells and memory T cells, and increased numbers of circulating naive lymphocytes. Inheritance is autosomal recessive. The disease is caused by variants affecting the gene represented in this entry. Lymphoma, mucosa-associated lymphoid type (MALTOMA) [MIM:137245] A subtype of non-Hodgkin lymphoma, originating in mucosa-associated lymphoid tissue. MALT lymphomas occur most commonly in the gastro-intestinal tract but have been described in a variety of extranodal sites including the ocular adnexa, salivary gland, thyroid, lung, thymus, and breast. Histologically, they are characterized by an infiltrate of small to medium-sized lymphocytes with abundant cytoplasm and irregularly shaped nuclei. Scattered transformed blasts (large cells) also are present. Non-malignant reactive follicles are observed frequently. A pivotal feature is the presence of lymphoepithelial lesions, with invasion and partial destruction of mucosal glands and crypts by aggregates of tumor cells. The disease is caused by variants affecting the gene represented in this entry.
RefSeq proteins (2): NP_001307644, NP_003912* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001315 | CARD | Domain |
| IPR011029 | DEATH-like_dom_sf | Homologous_superfamily |
| IPR033238 | BCL10/E10 | Family |
| IPR042143 | CARD_BCL10 | Domain |
Pfam: PF00619
UniProt features (63 total): sequence variant 20, mutagenesis site 20, helix 8, turn 3, cross-link 3, modified residue 2, strand 2, chain 1, domain 1, region of interest 1, compositionally biased region 1, site 1
Structure
Experimental structures (PDB)
5 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6BZE | ELECTRON MICROSCOPY | 4 |
| 8CZO | ELECTRON MICROSCOPY | 4.3 |
| 8CZD | ELECTRON MICROSCOPY | 4.6 |
| 6GK2 | ELECTRON MICROSCOPY | 4.9 |
| 2MB9 | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O95999-F1 | 70.43 | 0.37 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 228–229 (cleavage; by malt1)
Post-translational modifications (5): 1, 138, 17, 31, 63
Mutagenesis-validated functional residues (20):
| Position | Phenotype |
|---|---|
| 17 | decreased linear ubiquitination and impaired ability to activate nf-kappa-b; when associated with r-31 and r-63. |
| 28 | abolishes cell death-inducing capability. |
| 31 | decreased ubiquitination and ability to bind nemo; when associated with 63-r–r-67. decreased ubiquitination and ability |
| 36 | abolished homomultimerization and formation of a cbm complex, abolished ability to activate nf-kappa-b. |
| 41 | abolishes cell death-inducing capability. |
| 41 | abolishes nf-kappa-b activation and homo/heterodimerization. |
| 46 | abolishes cell death-inducing capability. |
| 47 | abolishes cell death-inducing capability. |
| 50–51 | abolished homomultimerization and formation of a cbm complex. |
| 50 | abolished homomultimerization and formation of a cbm complex, abolished ability to activate nf-kappa-b. |
| 53 | abolishes cell death-inducing capability. |
| 53 | abolished homomultimerization and formation of a cbm complex, abolished ability to activate nf-kappa-b. |
| 55 | abolishes cell death-inducing capability. |
| 63–67 | decreased ubiquitination and ability to bind nemo; when associated with r-31. |
| 63 | decreased ubiquitination and ability to bind nemo, impaired ability to activate nf-kappa-b; when associated with r-31. d |
| 78 | abolishes nf-kappa-b activation. |
| 81–85 | complete loss of ikbkb/ikkb-mediated phosphorylation. |
| 105–115 | does not affect ubiquitination and ability to bind nemo. |
| 228 | abolishes malt1-mediated cleavage. |
| 231 | promotes nf-kappa-b activation. |
Function
Pathways and Gene Ontology
Reactome pathways
16 pathways
| ID | Pathway |
|---|---|
| R-HSA-1169091 | Activation of NF-kappaB in B cells |
| R-HSA-202424 | Downstream TCR signaling |
| R-HSA-2871837 | FCERI mediated NF-kB activation |
| R-HSA-5607764 | CLEC7A (Dectin-1) signaling |
| R-HSA-8866654 | E3 ubiquitin ligases ubiquitinate target proteins |
| R-HSA-1168372 | Downstream signaling events of B Cell Receptor (BCR) |
| R-HSA-1280218 | Adaptive Immune System |
| R-HSA-168249 | Innate Immune System |
| R-HSA-168256 | Immune System |
| R-HSA-202403 | TCR signaling |
| R-HSA-2454202 | Fc epsilon receptor (FCERI) signaling |
| R-HSA-392499 | Metabolism of proteins |
| R-HSA-5621481 | C-type lectin receptors (CLRs) |
| R-HSA-597592 | Post-translational protein modification |
| R-HSA-8852135 | Protein ubiquitination |
| R-HSA-983705 | Signaling by the B Cell Receptor (BCR) |
MSigDB gene sets: 471 (showing top):
PID_BCR_5PATHWAY, GSE45365_NK_CELL_VS_CD11B_DC_DN, GSE45365_NK_CELL_VS_BCELL_UP, GSE18804_SPLEEN_MACROPHAGE_VS_COLON_TUMORAL_MACROPHAGE_UP, GOBP_REGULATION_OF_T_CELL_RECEPTOR_SIGNALING_PATHWAY, GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM, GOBP_REGULATION_OF_CELL_ACTIVATION, GOBP_REGULATION_OF_ANTIGEN_RECEPTOR_MEDIATED_SIGNALING_PATHWAY, GOBP_EMBRYO_DEVELOPMENT_ENDING_IN_BIRTH_OR_EGG_HATCHING, GOBP_EPITHELIUM_DEVELOPMENT, REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_B_CELL_HOMEOSTASIS, GOBP_REGULATION_OF_PHOSPHORYLATION, REACTOME_ADAPTIVE_IMMUNE_SYSTEM, GOBP_POSITIVE_REGULATION_OF_INTERLEUKIN_8_PRODUCTION
GO Biological Process (40): B cell apoptotic process (GO:0001783), neural tube closure (GO:0001843), toll-like receptor signaling pathway (GO:0002224), adaptive immune response (GO:0002250), negative regulation of mature B cell apoptotic process (GO:0002906), cellular defense response (GO:0006968), programmed cell death (GO:0012501), immunoglobulin mediated immune response (GO:0016064), quinolinate biosynthetic process (GO:0019805), positive regulation of protein ubiquitination (GO:0031398), lipopolysaccharide-mediated signaling pathway (GO:0031663), response to food (GO:0032094), positive regulation of interleukin-6 production (GO:0032755), positive regulation of interleukin-8 production (GO:0032757), positive regulation of lymphotoxin A production (GO:0032761), positive regulation of mast cell cytokine production (GO:0032765), non-canonical NF-kappaB signal transduction (GO:0038061), positive regulation of phosphorylation (GO:0042327), positive regulation of apoptotic process (GO:0043065), positive regulation of canonical NF-kappaB signal transduction (GO:0043123), innate immune response (GO:0045087), positive regulation of DNA-templated transcription (GO:0045893), T cell receptor signaling pathway (GO:0050852), positive regulation of T cell receptor signaling pathway (GO:0050862), positive regulation of T cell activation (GO:0050870), obsolete positive regulation of NF-kappaB transcription factor activity (GO:0051092), protein homooligomerization (GO:0051260), antifungal innate immune response (GO:0061760), T cell apoptotic process (GO:0070231), cellular response to lipopolysaccharide (GO:0071222), cellular response to mechanical stimulus (GO:0071260), apoptotic signaling pathway (GO:0097190), positive regulation of extrinsic apoptotic signaling pathway (GO:2001238), positive regulation of cytokine production (GO:0001819), immune system process (GO:0002376), apoptotic process (GO:0006915), response to fungus (GO:0009620), response to lipopolysaccharide (GO:0032496), regulation of apoptotic process (GO:0042981), regulation of T cell receptor signaling pathway (GO:0050856)
GO Molecular Function (13): protease binding (GO:0002020), transcription coactivator activity (GO:0003713), protein-macromolecule adaptor activity (GO:0030674), ubiquitin protein ligase binding (GO:0031625), signaling adaptor activity (GO:0035591), identical protein binding (GO:0042802), protein kinase B binding (GO:0043422), protein-containing complex binding (GO:0044877), CARD domain binding (GO:0050700), NF-kappaB binding (GO:0051059), general transcription initiation factor binding (GO:0140296), protein binding (GO:0005515), kinase activator activity (GO:0019209)
GO Cellular Component (13): immunological synapse (GO:0001772), polkadots (GO:0002096), nucleus (GO:0005634), nucleoplasm (GO:0005654), cytoplasm (GO:0005737), lysosome (GO:0005764), cytosol (GO:0005829), cytoplasmic microtubule (GO:0005881), CBM complex (GO:0032449), protein-containing complex (GO:0032991), membrane raft (GO:0045121), perinuclear region of cytoplasm (GO:0048471), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-11 pathways:
| Category | Pathways |
|---|---|
| Immune System | 2 |
| Adaptive Immune System | 2 |
| Innate Immune System | 2 |
| Downstream signaling events of B Cell Receptor (BCR) | 1 |
| TCR signaling | 1 |
| Fc epsilon receptor (FCERI) signaling | 1 |
| C-type lectin receptors (CLRs) | 1 |
| Protein ubiquitination | 1 |
| Signaling by the B Cell Receptor (BCR) | 1 |
| Metabolism of proteins | 1 |
| Post-translational protein modification | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 6 |
| cytoplasm | 4 |
| positive regulation of cytokine production | 2 |
| protein binding | 2 |
| binding | 2 |
| lymphocyte apoptotic process | 1 |
| primary neural tube formation | 1 |
| tube closure | 1 |
| pattern recognition receptor signaling pathway | 1 |
| immune response | 1 |
| mature B cell apoptotic process | 1 |
| negative regulation of B cell apoptotic process | 1 |
| regulation of mature B cell apoptotic process | 1 |
| defense response | 1 |
| signal transduction | 1 |
| cell death | 1 |
| B cell mediated immunity | 1 |
| dicarboxylic acid biosynthetic process | 1 |
| quinolinate metabolic process | 1 |
| pyridine-containing compound biosynthetic process | 1 |
| protein ubiquitination | 1 |
| regulation of protein ubiquitination | 1 |
| positive regulation of protein modification by small protein conjugation or removal | 1 |
| cell surface receptor signaling pathway | 1 |
| cellular response to lipopolysaccharide | 1 |
| response to nutrient levels | 1 |
| response to chemical | 1 |
| interleukin-6 production | 1 |
| regulation of interleukin-6 production | 1 |
| interleukin-8 production | 1 |
| regulation of interleukin-8 production | 1 |
| lymphotoxin A production | 1 |
| regulation of lymphotoxin A production | 1 |
| positive regulation of protein metabolic process | 1 |
| positive regulation of tumor necrosis factor superfamily cytokine production | 1 |
| mast cell cytokine production | 1 |
| regulation of mast cell cytokine production | 1 |
| positive regulation of myeloid leukocyte cytokine production involved in immune response | 1 |
| intracellular signaling cassette | 1 |
| phosphorylation | 1 |
Protein interactions and networks
STRING
1528 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| BCL10 | CARD11 | Q9BXL7 | 999 |
| BCL10 | MALT1 | Q9UDY8 | 999 |
| BCL10 | CARD9 | Q9H257 | 998 |
| BCL10 | CARD10 | Q9BWT7 | 998 |
| BCL10 | TRAF6 | Q9Y4K3 | 994 |
| BCL10 | CASP8 | Q14790 | 984 |
| BCL10 | IKBKG | Q9Y6K9 | 981 |
| BCL10 | CARD14 | Q9BXL6 | 977 |
| BCL10 | MIB2 | Q96AX9 | 916 |
| BCL10 | PRKCQ | Q04759 | 902 |
| BCL10 | RIGI | O95786 | 893 |
| BCL10 | IKBKB | O14920 | 876 |
| BCL10 | SYK | P43405 | 868 |
| BCL10 | NFKB1 | P19838 | 848 |
| BCL10 | CHUK | O15111 | 843 |
IntAct
121 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MALT1 | BCL10 | psi-mi:“MI:0914”(association) | 0.950 |
| BCL10 | MALT1 | psi-mi:“MI:0915”(physical association) | 0.950 |
| MALT1 | BCL10 | psi-mi:“MI:0915”(physical association) | 0.950 |
| CARD11 | BCL10 | psi-mi:“MI:0915”(physical association) | 0.860 |
| BCL10 | CARD11 | psi-mi:“MI:0914”(association) | 0.860 |
| BCL10 | CARD11 | psi-mi:“MI:0915”(physical association) | 0.860 |
| CARD11 | BCL10 | psi-mi:“MI:0914”(association) | 0.860 |
| TRAF2 | BCL10 | psi-mi:“MI:0915”(physical association) | 0.850 |
| BCL10 | TRAF2 | psi-mi:“MI:0915”(physical association) | 0.850 |
| BCL10 | TRAF2 | psi-mi:“MI:0914”(association) | 0.850 |
| BCL10 | IKBKG | psi-mi:“MI:0915”(physical association) | 0.790 |
BioGRID (224): MALT1 (Affinity Capture-Western), MALT1 (Reconstituted Complex), UBE2V2 (Reconstituted Complex), IKBKG (Reconstituted Complex), CHUK (Reconstituted Complex), IKBKB (Reconstituted Complex), UBE2N (Reconstituted Complex), BCL10 (Two-hybrid), BCL10 (Two-hybrid), BCL10 (Proximity Label-MS), BCL10 (Affinity Capture-MS), BCL10 (Affinity Capture-MS), CARD11 (Affinity Capture-Western), MALT1 (Affinity Capture-Western), BCL10 (Affinity Capture-Western)
ESM2 similar proteins: A7YWH3, E1BP74, E2RK09, F1SRY5, G3X8Y1, O15151, O95999, P86174, P97432, Q00IB7, Q13023, Q17RG1, Q3UFT3, Q501R9, Q562E2, Q5PQN5, Q5RC94, Q5SUE8, Q5SXH7, Q5XIN1, Q6AI12, Q6NRE4, Q6ZPF3, Q6ZU67, Q7TP65, Q7ZVU1, Q810L3, Q86T82, Q86XL3, Q8BFU3, Q8BJ34, Q8BSV3, Q8C0R0, Q8IVF5, Q8IW35, Q8N7W2, Q8ND24, Q8NDB2, Q8TEW8, Q8VIG2
Diamond homologs: O95999, Q66677, Q9QYN5, Q9Z0H7
SIGNOR signaling
15 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| BCL10 | up-regulates | IKBKG | binding |
| CARD9 | “up-regulates quantity by stabilization” | BCL10 | binding |
| ITCH | “down-regulates quantity by destabilization” | BCL10 | ubiquitination |
| BCL10 | “up-regulates quantity by expression” | NFKB1 | “transcriptional regulation” |
| IKBKG | “up-regulates activity” | BCL10 | ubiquitination |
| IKBKB | “up-regulates activity” | BCL10 | phosphorylation |
| BCL10 | “form complex” | CBM | binding |
| ATM | “up-regulates activity” | BCL10 | phosphorylation |
| RNF8 | “up-regulates quantity by stabilization” | BCL10 | ubiquitination |
| CARD11 | up-regulates | BCL10 | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 52 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| NOD1/2 Signaling Pathway | 5 | 45.3× | 1e-05 |
| C-type lectin receptors (CLRs) | 6 | 40.8× | 1e-06 |
| Regulation of TNFR1 signaling | 5 | 32.0× | 3e-05 |
| CLEC7A (Dectin-1) signaling | 7 | 28.6× | 1e-06 |
| FCERI mediated NF-kB activation | 5 | 22.4× | 1e-04 |
| Downstream TCR signaling | 6 | 22.0× | 2e-05 |
| Innate Immune System | 8 | 5.8× | 1e-03 |
| Viral Infection Pathways | 6 | 5.3× | 1e-02 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| canonical NF-kappaB signal transduction | 7 | 57.0× | 8e-09 |
| positive regulation of interleukin-2 production | 5 | 52.0× | 8e-06 |
| obsolete positive regulation of NF-kappaB transcription factor activity | 9 | 41.1× | 3e-10 |
| negative regulation of canonical NF-kappaB signal transduction | 6 | 22.9× | 4e-05 |
| positive regulation of canonical NF-kappaB signal transduction | 13 | 21.0× | 2e-11 |
| regulation of apoptotic process | 7 | 13.0× | 1e-04 |
| positive regulation of ERK1 and ERK2 cascade | 5 | 9.5× | 7e-03 |
| negative regulation of apoptotic process | 8 | 6.2× | 2e-03 |
Disease & clinical
Cancer significance
From intOGen — cancer-driver classification: loss-of-function (tumor-suppressor-like) across 2 cancer types — DLBCLNOS, MLYM.
Clinical variants and AI predictions
ClinVar
145 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 20 |
| Likely pathogenic | 1 |
| Uncertain significance | 54 |
| Likely benign | 50 |
| Benign | 6 |
Top pathogenic / likely-pathogenic (21)
| Variant ID | HGVS | Classification |
|---|---|---|
| 160347 | NM_003921.5(BCL10):c.57+1G>A | Pathogenic |
| 1968159 | NM_003921.5(BCL10):c.14dup (p.Pro6fs) | Pathogenic |
| 2086361 | NM_003921.5(BCL10):c.217C>T (p.Gln73Ter) | Pathogenic |
| 30361 | NM_003921.5(BCL10):c.488C>T (p.Thr163Met) | Pathogenic |
| 3651130 | NM_003921.5(BCL10):c.207dup (p.Asp70fs) | Pathogenic |
| 4691162 | NM_003921.5(BCL10):c.262C>T (p.Arg88Ter) | Pathogenic |
| 6250 | NM_003921.5(BCL10):c.499dup (p.Ser167fs) | Pathogenic |
| 6251 | NM_003921.5(BCL10):c.163dup (p.Ile55fs) | Pathogenic |
| 6252 | NM_003921.5(BCL10):c.345del (p.Gly116fs) | Pathogenic |
| 6253 | NM_003921.5(BCL10):c.427_428dup (p.Glu145fs) | Pathogenic |
| 6254 | NM_003921.5(BCL10):c.231dup (p.Gly78fs) | Pathogenic |
| 6255 | NM_003921.5(BCL10):c.525_541del (p.Val176fs) | Pathogenic |
| 6256 | NM_003921.5(BCL10):c.410del (p.Asn137fs) | Pathogenic |
| 6257 | NM_003921.5(BCL10):c.398dup (p.Ser134fs) | Pathogenic |
| 6258 | NM_003921.5(BCL10):c.629AAG[2] (p.Glu212del) | Pathogenic |
| 6259 | NM_003921.5(BCL10):c.136dup (p.Ile46fs) | Pathogenic |
| 6260 | NM_003921.5(BCL10):c.428del (p.Phe143fs) | Pathogenic |
| 6263 | NM_003921.5(BCL10):c.136del (p.Ile46fs) | Pathogenic |
| 6265 | NM_003921.5(BCL10):c.172C>G (p.Arg58Gly) | Pathogenic |
| 6266 | NM_003921.5(BCL10):c.172C>T (p.Arg58Ter) | Pathogenic |
| 1807732 | GRCh37/hg19 1p22.3(chr1:85667594-85875622)x3 | Likely pathogenic |
SpliceAI
460 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:85270612:TCTTA:T | donor_loss | 1.0000 |
| 1:85270613:CTTA:C | donor_loss | 1.0000 |
| 1:85270614:TTAC:T | donor_loss | 1.0000 |
| 1:85270615:TACC:T | donor_loss | 1.0000 |
| 1:85270616:A:AC | donor_gain | 1.0000 |
| 1:85270616:A:AT | donor_loss | 1.0000 |
| 1:85270617:C:CC | donor_gain | 1.0000 |
| 1:85270617:CCTTT:C | donor_gain | 1.0000 |
| 1:85270907:C:CG | acceptor_loss | 1.0000 |
| 1:85276294:A:AC | donor_gain | 1.0000 |
| 1:85276294:ACGT:A | donor_gain | 1.0000 |
| 1:85276295:C:CC | donor_gain | 1.0000 |
| 1:85276295:CGTC:C | donor_gain | 1.0000 |
| 1:85276297:T:TA | donor_gain | 1.0000 |
| 1:85270616:AC:A | donor_gain | 0.9900 |
| 1:85270617:CC:C | donor_gain | 0.9900 |
| 1:85270903:AGGC:A | acceptor_gain | 0.9900 |
| 1:85270903:AGGCC:A | acceptor_gain | 0.9900 |
| 1:85270904:GGC:G | acceptor_gain | 0.9900 |
| 1:85270904:GGCCT:G | acceptor_gain | 0.9900 |
| 1:85270905:GC:G | acceptor_gain | 0.9900 |
| 1:85270905:GCC:G | acceptor_gain | 0.9900 |
| 1:85270906:CC:C | acceptor_gain | 0.9900 |
| 1:85270906:CCT:C | acceptor_gain | 0.9900 |
| 1:85270907:C:CC | acceptor_gain | 0.9900 |
| 1:85270907:CT:C | acceptor_gain | 0.9900 |
| 1:85270908:T:A | acceptor_gain | 0.9900 |
| 1:85276295:CGT:C | donor_gain | 0.9900 |
| 1:85270659:T:TA | donor_gain | 0.9800 |
| 1:85276294:ACGTC:A | donor_gain | 0.9800 |
AlphaMissense
1502 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:85270682:G:C | F94L | 0.999 |
| 1:85270682:G:T | F94L | 0.999 |
| 1:85270684:A:G | F94L | 0.999 |
| 1:85270711:A:G | S85P | 0.999 |
| 1:85270719:A:G | L82P | 0.999 |
| 1:85270732:C:G | G78R | 0.999 |
| 1:85270758:A:G | L69S | 0.999 |
| 1:85270761:A:G | L68S | 0.999 |
| 1:85270824:A:G | L47P | 0.999 |
| 1:85270824:A:T | L47H | 0.999 |
| 1:85270840:G:T | R42S | 0.999 |
| 1:85270842:A:G | L41P | 0.999 |
| 1:85270842:A:T | L41Q | 0.999 |
| 1:85270863:G:T | A34D | 0.999 |
| 1:85270668:A:C | I99S | 0.998 |
| 1:85270707:A:T | I86N | 0.998 |
| 1:85270710:G:A | S85F | 0.998 |
| 1:85270719:A:T | L82H | 0.998 |
| 1:85270749:A:G | L72S | 0.998 |
| 1:85270854:T:C | H37R | 0.998 |
| 1:85270856:T:A | R36S | 0.998 |
| 1:85270856:T:G | R36S | 0.998 |
| 1:85270881:A:G | L28P | 0.998 |
| 1:85270881:A:T | L28Q | 0.998 |
| 1:85276302:C:A | K17N | 0.998 |
| 1:85276302:C:G | K17N | 0.998 |
| 1:85270668:A:G | I99T | 0.997 |
| 1:85270668:A:T | I99N | 0.997 |
| 1:85270683:A:G | F94S | 0.997 |
| 1:85270728:A:G | L79P | 0.997 |
dbSNP variants (sampled 300 via entrez): RS1000224153 (1:85265605 A>G), RS1000355808 (1:85268360 G>A), RS1000383283 (1:85275929 G>A,C), RS1000664692 (1:85277909 A>C,G), RS1000718516 (1:85276707 G>C,T), RS1000749528 (1:85276582 C>G,T), RS1000780363 (1:85277591 C>T), RS1000997882 (1:85270099 T>A), RS1001940315 (1:85277018 A>G), RS1002365480 (1:85271680 C>T), RS1002651998 (1:85273162 T>C), RS1002655078 (1:85274593 C>T), RS1002791293 (1:85278550 C>G,T), RS1002920263 (1:85273532 T>A), RS1003033629 (1:85274879 T>C)
Disease associations
OMIM: gene MIM:603517 | disease phenotypes: MIM:616098, MIM:615546, MIM:137245, MIM:156240, MIM:273300, MIM:605027
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| immunodeficiency 37 | Strong | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| immunodeficiency 37 | Definitive | AR |
Mondo (12): immunodeficiency 37 (MONDO:0014491), testicular cancer (MONDO:0005447), van Maldergem syndrome 2 (MONDO:0014242), mesothelioma (MONDO:0005065), MALT lymphoma (MONDO:0007650), follicular lymphoma (MONDO:0018906), colon carcinoma (MONDO:0002032), T-cell acute lymphoblastic leukemia (MONDO:0004963), Sezary syndrome (MONDO:0017844), malignant mesothelioma (MONDO:0006292), testicular germ cell tumor (MONDO:0010108), lymphoma, non-Hodgkin, familial (MONDO:0011508)
Orphanet (6): Cerebrofacioarticular syndrome (Orphanet:314679), MALT lymphoma (Orphanet:52417), Follicular lymphoma (Orphanet:545), Sézary syndrome (Orphanet:3162), Germ cell tumor of testis (Orphanet:363504), Pleural mesothelioma (Orphanet:50251)
HPO phenotypes
38 total (30 of 38 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000027 | Azoospermia |
| HP:0000505 | Visual impairment |
| HP:0000614 | Abnormal nasolacrimal system morphology |
| HP:0000820 | Abnormality of the thyroid gland |
| HP:0000975 | Hyperhidrosis |
| HP:0001250 | Seizure |
| HP:0001442 | Typified by somatic mosaicism |
| HP:0001824 | Weight loss |
| HP:0001903 | Anemia |
| HP:0001945 | Fever |
| HP:0002017 | Nausea and vomiting |
| HP:0002019 | Constipation |
| HP:0002027 | Abdominal pain |
| HP:0002113 | Pulmonary infiltrates |
| HP:0002133 | Status epilepticus |
| HP:0002205 | Recurrent respiratory infections |
| HP:0002383 | Infectious encephalitis |
| HP:0002583 | Colitis |
| HP:0002665 | Lymphoma |
| HP:0002716 | Lymphadenopathy |
| HP:0002719 | Recurrent infections |
| HP:0002721 | Immunodeficiency |
| HP:0002898 | Embryonal neoplasm |
| HP:0003581 | Adult onset |
| HP:0003593 | Infantile onset |
| HP:0003745 | Sporadic |
| HP:0004313 | Decreased circulating immunoglobulin concentration |
| HP:0006254 | Elevated circulating alpha-fetoprotein concentration |
| HP:0009792 | Teratoma |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST005531_27 | Multiple sclerosis | 1.000000e-20 |
| GCST009391_1534 | Metabolite levels | 2.000000e-11 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0010510 | NG-monomethyl-arginine measurement |
MeSH disease descriptors (5)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008224 | Lymphoma, Follicular | C04.557.386.480.350; C15.604.515.569.480.350; C20.683.515.761.480.350 |
| D008654 | Mesothelioma | C04.557.470.035.510; C04.557.470.660.510 |
| D012751 | Sezary Syndrome | C04.557.386.480.750.800.775; C15.604.515.569.480.750.800.775; C15.604.515.841; C20.683.515.761.480.750.800.775; C20.683.515.920 |
| D013736 | Testicular Neoplasms | C04.588.322.762; C04.588.945.440.915; C12.100.500.260.937; C12.200.294.260.937; C12.200.758.409.937; C12.900.619.937; C19.344.762; C19.391.829.782 |
| C563236 | Testicular Germ Cell Tumor (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
64 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | affects cotreatment, decreases expression, increases expression | 2 |
| Arsenic | affects cotreatment, increases expression | 2 |
| Benzo(a)pyrene | decreases methylation, increases expression | 2 |
| Cyclosporine | increases expression | 2 |
| Gold Compounds | decreases expression, increases methylation, affects cotreatment, increases expression | 2 |
| Genistein | decreases reaction, increases expression | 2 |
| 2-anisidine | affects expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| deoxynivalenol | increases expression | 1 |
| lead acetate | affects cotreatment, decreases expression | 1 |
| VX-agent | increases expression | 1 |
| cobaltous chloride | increases expression | 1 |
| manganese chloride | increases abundance, increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| usnic acid | increases expression | 1 |
| pentabromodiphenyl ether | increases expression | 1 |
| EKB 569 | decreases expression | 1 |
| abrine | increases expression | 1 |
| 3,5-bis(2-fluorobenzylidene)piperidin-4-one | increases expression, decreases reaction | 1 |
| jinfukang | decreases expression | 1 |
| PCI 5002 | increases expression, affects cotreatment | 1 |
| Aripiprazole | increases expression, affects cotreatment | 1 |
| Resveratrol | decreases reaction, increases expression | 1 |
| Arsenic Trioxide | increases expression | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Vehicle Emissions | decreases methylation | 1 |
| Calcitriol | increases expression, affects cotreatment | 1 |
| Capsaicin | increases expression | 1 |
| Carmustine | increases expression | 1 |
Cellosaurus cell lines
9 cell lines: 9 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1L4 | Abcam HeLa BCL10 KO | Cancer cell line | Female |
| CVCL_B8BU | Abcam HCT 116 BCL10 KO | Cancer cell line | Male |
| CVCL_B8ST | Abcam MCF-7 BCL10 KO | Cancer cell line | Female |
| CVCL_B9DY | Abcam A-549 BCL10 KO | Cancer cell line | Male |
| CVCL_E1RZ | HAP1 BCL10 (-) 1 | Cancer cell line | Male |
| CVCL_E1S0 | HAP1 BCL10 (-) 2 | Cancer cell line | Male |
| CVCL_E1S1 | HAP1 BCL10 (-) 3 | Cancer cell line | Male |
| CVCL_E1S2 | HAP1 BCL10 (-) 4 | Cancer cell line | Male |
| CVCL_F1R5 | HyCyte Jurkat KO-hBCL10 | Cancer cell line | Male |
Clinical trials (associated diseases)
297 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01641172 | PHASE4 | COMPLETED | Taste, Smell and Chemotherapy (TASTY) |
| NCT03655821 | PHASE4 | TERMINATED | Dose Individualization of Pemetrexed - IMPROVE-II |
| NCT03655834 | PHASE4 | COMPLETED | Dose Individualization of Pemetrexed - IMPROVE-III |
| NCT03656549 | PHASE4 | COMPLETED | Dose Individualization of Pemetrexed - IMPROVE-I |
| NCT06010277 | PHASE4 | UNKNOWN | Folinic Acid for Prevention of Pemetrexed-induced Toxicity |
| NCT06593665 | PHASE3 | RECRUITING | Intrathecal Morphine Versus Intravenous Methadone for Postoperative Analgesia Following Retroperitoneal Lymph Node Dissection. |
| NCT00128102 | PHASE3 | COMPLETED | Suberoylanilide Hydroxamic Acid (Vorinostat, MK-0683) Versus Placebo in Advanced Malignant Pleural Mesothelioma (MK-0683-014) |
| NCT00190762 | PHASE3 | COMPLETED | A Study Comparing Pemetrexed Plus Best Supportive Care Versus Best Supportive Care Alone in the Treatment of Mesothelioma |
| NCT01604005 | PHASE3 | TERMINATED | PIT: Prophylactic Irradiation of Tracts in Patients With Malignant Pleural Mesothelioma |
| NCT02511600 | PHASE3 | WITHDRAWN | Comparison of Progel Sealant to Standard of Care (SOC) for Patients Undergoing Decortication |
| NCT02899299 | PHASE3 | COMPLETED | Study of Nivolumab Combined With Ipilimumab Versus Pemetrexed and Cisplatin or Carboplatin as First Line Therapy in Unresectable Pleural Mesothelioma Patients |
| NCT03063450 | PHASE3 | COMPLETED | CheckpOiNt Blockade For Inhibition of Relapsed Mesothelioma |
| NCT04334759 | PHASE3 | COMPLETED | DuRvalumab With chEmotherapy as First Line treAtment in Advanced Pleural Mesothelioma |
| NCT00183820 | PHASE2 | COMPLETED | Study of Gemcitabine, Oxaliplatin, and Paclitaxel in Patients With Refractory Germ Cell Carcinoma |
| NCT00531687 | PHASE2 | TERMINATED | Trial of Paclitaxel, Gemcitabine and Cisplatin in Patients With Relapsing Germ Cell Cancer |
| NCT00587964 | PHASE2 | COMPLETED | Phase II Trial of Stereotactic Radiosurgery Boost Following Surgical Resection for Brain Metastases |
| NCT00772694 | PHASE2 | UNKNOWN | Sorafenib Monotherapy in Inoperable/Recurrent Germ Cell Carcinoma Refractory to Chemotherapy |
| NCT00936936 | PHASE2 | COMPLETED | High-dose Chemotherapy for Poor-Prognosis Relapsed Germ-Cell Tumors |
| NCT00957905 | PHASE2 | COMPLETED | Alvocidib and Oxaliplatin With or Without Fluorouracil and Leucovorin Calcium in Treating Patients With Relapsed or Refractory Germ Cell Tumors |
| NCT01242631 | PHASE2 | COMPLETED | Everolimus for Patients With Relapsed/Refractory Germ Cell Cancer |
| NCT01684098 | PHASE2 | COMPLETED | Safety and Efficacy of FalateScan (Technetium Tc 99m EC20) in Patients With Known Suspected Recurrent or Metastatic Cancer From a Solid Tumor |
| NCT02478502 | PHASE2 | TERMINATED | Testis CAB: Cabazitaxel as Salvage Treatment for Cisplatin-resistant Germ Cell Cancer |
| NCT02689219 | PHASE2 | TERMINATED | Brentuximab Vedotin in Relapsed/Refractory Germ Cell Tumors |
| NCT02860819 | PHASE2 | COMPLETED | Study of Gemcitabine, Carboplatin and VELIPARIB (ABT-888) in Refractory Testicular Germ Cell Cancer |
| NCT03339635 | PHASE2 | COMPLETED | Short-term Testosterone Replacement in Testicular Cancer Survivors |
| NCT03937843 | PHASE2 | ACTIVE_NOT_RECRUITING | Reduced Intensity Radio-chemotherapy for Stage IIA/B Seminoma |
| NCT04150848 | PHASE2 | UNKNOWN | A Biobehavioral Intervention for Young Men With Testicular Cancer |
| NCT05969860 | PHASE2 | RECRUITING | At-Home Cancer Directed Therapy Versus in Clinic for the Treatment of Patients With Advanced Cancer |
| NCT06684327 | PHASE2 | RECRUITING | Multi-cohort, Single-arm Phase II Study of Albumin-paclitaxel, Ifosfamide, and Cisplatin in the Treatment of Rare Advanced Tumors |
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Related Atlas pages
- Associated diseases: immunodeficiency 37
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): colon carcinoma, follicular lymphoma, immunodeficiency 37, lymphoma, non-Hodgkin, familial, malignant mesothelioma, MALT lymphoma, mesothelioma, Sezary syndrome, T-cell acute lymphoblastic leukemia, testicular cancer, van Maldergem syndrome 2