BETALINC1

Summary

BETALINC1 (Beta cell long intergenic noncoding RNA 1, HGNC:51391) is a long non-coding RNA gene on chromosome 20p11.22.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51391
Approved symbol	BETALINC1
Name	Beta cell long intergenic noncoding RNA 1
Location	20p11.22
Locus type	RNA, long non-coding
Status	Approved
Aliases	HI-LNC15
Ensembl gene	ENSG00000233492
Ensembl biotype	lncRNA
Entrez	124904961
RNAcentral	URS0000EF5B22 — lncRNA, 1744 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000431034, ENST00000671531

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000431034 — 2 exons

Exon	Start	End
ENSE00001719670	21530202	21530225
ENSE00001772897	21530320	21530744

Expression profiles

Bgee: expression breadth broad, 52 present calls, max score 77.29.

Top tissues by expression

52 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cortex of kidney	UBERON:0001225	77.29	gold quality
sural nerve	UBERON:0015488	77.06	gold quality
islet of Langerhans	UBERON:0000006	66.99	gold quality
pituitary gland	UBERON:0000007	60.16	gold quality
adenohypophysis	UBERON:0002196	59.64	gold quality
pancreas	UBERON:0001264	59.40	gold quality
blood	UBERON:0000178	59.22	gold quality
duodenum	UBERON:0002114	55.47	gold quality
body of pancreas	UBERON:0001150	53.89	gold quality
lower esophagus muscularis layer	UBERON:0035833	53.78	gold quality
liver	UBERON:0002107	53.61	gold quality
monocyte	CL:0000576	52.52	gold quality
prefrontal cortex	UBERON:0000451	52.20	gold quality
right lobe of liver	UBERON:0001114	51.70	gold quality
primary visual cortex	UBERON:0002436	48.73	gold quality
small intestine	UBERON:0002108	48.59	gold quality
corpus callosum	UBERON:0002336	47.22	silver quality
brain	UBERON:0000955	47.20	gold quality
substantia nigra	UBERON:0002038	47.11	gold quality
fundus of stomach	UBERON:0001160	47.04	gold quality
intestine	UBERON:0000160	46.81	gold quality
frontal cortex	UBERON:0001870	46.62	gold quality
temporal lobe	UBERON:0001871	45.98	gold quality
amygdala	UBERON:0001876	45.85	gold quality
Ammon’s horn	UBERON:0001954	45.76	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	45.55	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	45.18	gold quality
omental fat pad	UBERON:0010414	45.09	gold quality
stomach	UBERON:0000945	44.95	gold quality
cerebral cortex	UBERON:0000956	44.92	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.32

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.