BMP7

gene
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Also known as OP-1

Summary

BMP7 (bone morphogenetic protein 7, HGNC:1074) is a protein-coding gene on chromosome 20q13.31, encoding Bone morphogenetic protein 7 (P18075). Growth factor of the TGF-beta superfamily that plays important role in various biological processes, including embryogenesis, hematopoiesis, neurogenesis and skeletal morphogenesis.

This gene encodes a secreted ligand of the TGF-beta (transforming growth factor-beta) superfamily of proteins. Ligands of this family bind various TGF-beta receptors leading to recruitment and activation of SMAD family transcription factors that regulate gene expression. The encoded preproprotein is proteolytically processed to generate each subunit of the disulfide-linked homodimer, which plays a role in bone, kidney and brown adipose tissue development. Additionally, this protein induces ectopic bone formation and may promote fracture healing in human patients.

Source: NCBI Gene 655 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): multiple congenital anomalies/dysmorphic syndrome (Moderate, GenCC) — +4 more curated relationships
  • GWAS associations: 23
  • Clinical variants (ClinVar): 140 total — 2 pathogenic
  • Transcription factor: yes — 10 downstream targets (CollecTRI)
  • MANE Select transcript: NM_001719

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:1074
Approved symbolBMP7
Namebone morphogenetic protein 7
Location20q13.31
Locus typegene with protein product
StatusApproved
AliasesOP-1
Ensembl geneENSG00000101144
Ensembl biotypeprotein_coding
OMIM112267
Entrez655

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 4 protein_coding, 4 protein_coding_CDS_not_defined, 1 retained_intron

ENST00000395863, ENST00000395864, ENST00000433911, ENST00000450594, ENST00000460817, ENST00000463939, ENST00000476877, ENST00000524700, ENST00000530870

RefSeq mRNA: 1 — MANE Select: NM_001719 NM_001719

CCDS: CCDS13455

Canonical transcript exons

ENST00000395863 — 7 exons

ExonStartEnd
ENSE000015231155716875357171108
ENSE000019089375726570557266641
ENSE000034636445722822957228421
ENSE000035868435720247557202623
ENSE000036016955718372257183919
ENSE000036147595717493157175007
ENSE000036201445717320057173310

Expression profiles

Bgee: expression breadth ubiquitous, 243 present calls, max score 97.34.

FANTOM5 (CAGE): breadth broad, TPM avg 18.7444 / max 326.3417, expressed in 599 samples.

FANTOM5 promoters (7 alternative TSS)

Promoter IDTPM avgSamples expressed
18810011.9953566
1880983.9152512
1880971.6663463
1880960.5525283
1880990.3044177
2091740.1707110
1880950.140175

Top tissues by expression

280 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
pigmented layer of retinaUBERON:000178297.34gold quality
ventricular zoneUBERON:000305396.79gold quality
endometrium epitheliumUBERON:000481194.32gold quality
cranial nerve IIUBERON:000094193.71gold quality
ganglionic eminenceUBERON:000402391.83gold quality
olfactory bulbUBERON:000226489.64silver quality
thyroid glandUBERON:000204689.41gold quality
pancreatic ductal cellCL:000207989.19silver quality
left lobe of thyroid glandUBERON:000112088.98gold quality
right lobe of thyroid glandUBERON:000111988.79gold quality
buccal mucosa cellCL:000233688.73silver quality
esophagus mucosaUBERON:000246987.61gold quality
type B pancreatic cellCL:000016987.49gold quality
caudate nucleusUBERON:000187387.37gold quality
amygdalaUBERON:000187686.97gold quality
medial globus pallidusUBERON:000247786.90gold quality
sural nerveUBERON:001548886.59gold quality
C1 segment of cervical spinal cordUBERON:000646986.35gold quality
nucleus accumbensUBERON:000188285.83gold quality
skin of legUBERON:000151185.52gold quality
putamenUBERON:000187485.25gold quality
embryoUBERON:000092284.94gold quality
spinal cordUBERON:000224084.78gold quality
skin of abdomenUBERON:000141684.48gold quality
gingival epitheliumUBERON:000194984.28gold quality
placentaUBERON:000198784.22gold quality
dorsal motor nucleus of vagus nerveUBERON:000287083.93gold quality
globus pallidusUBERON:000187583.78gold quality
Ammon’s hornUBERON:000195483.73gold quality
zone of skinUBERON:000001483.71gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 1.

ExperimentMarker?Max mean expression
E-GEOD-36552no63.56
E-ANND-3no0.00

Regulation

Is transcription factor: yes

Downstream targets (CollecTRI)

10 targets.

TargetRegulation
DLK1Unknown
HAS2Activation
HYAL1Repression
HYAL2Repression
MMP13Repression
NEUROG2Activation
PPARGActivation
PPARGC1AUnknown
PRDM16Unknown
UCP1Unknown

Upstream regulators (CollecTRI, top): BMP4, GLI2, HAND2, HDAC2, HOXA13, LDB1, LMO4, NFATC1, SMAD1, SP1, TCF4, TP53, VDR, YBX1

miRNA regulators (miRDB)

77 targeting BMP7, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-5692A100.0074.406850
HSA-MIR-432-3P100.0067.86705
HSA-LET-7A-3P100.0074.033932
HSA-LET-7B-3P100.0074.083913
HSA-LET-7F-1-3P100.0074.023928
HSA-MIR-98-3P100.0074.083907
HSA-MIR-453499.9966.581907
HSA-LET-7F-2-3P99.9870.982588
HSA-MIR-1185-1-3P99.9871.042593
HSA-MIR-1185-2-3P99.9871.042593
HSA-MIR-4789-5P99.9870.762721
HSA-MIR-3688-3P99.9772.022834
HSA-MIR-1250-3P99.9670.044038
HSA-MIR-568899.9673.234504
HSA-MIR-495-3P99.9672.814197
HSA-LET-7C-3P99.9573.422862
HSA-MIR-808299.9567.271170
HSA-MIR-335-3P99.9373.364958
HSA-MIR-990299.8969.152250
HSA-MIR-449699.8868.892236
HSA-MIR-6857-5P99.8765.32985
HSA-MIR-548AR-3P99.8571.263889
HSA-MIR-548AZ-3P99.8270.563549
HSA-MIR-548BC99.8270.613524
HSA-MIR-548E-3P99.8270.593514
HSA-MIR-548F-3P99.8270.593540
HSA-MIR-548A-3P99.7670.583524
HSA-MIR-6763-5P99.7664.681767
HSA-MIR-4699-3P99.7170.153142
HSA-MIR-1212499.6869.172700

Literature-anchored findings (GeneRIF, showing 40)

  • Transforming growth factor-beta1 supports the rapid morphogenesis of heterotopic endochondral bone initiated by human osteogenic protein-1 via the synergistic upregulation of molecular markers (PMID:11769973)
  • age related decline in level may contribute to the elevated susceptibility of cartilage to the degenerative process. (PMID:12385776)
  • crystal structure of the antagonist Noggin bound to BMP-7, which shows that Noggin inhibits BMP signalling by blocking the molecular interfaces of the binding epitopes for both type I and type II receptors (PMID:12478285)
  • BMP-7 signaling is inhibited by glypican 3 in hepatocellular carcinoma cells (PMID:12478660)
  • BMP-7 inhibits constitutive and IL-1 beta-induced expression of monocyte chemoattractant protein-1 in mesangial cells, partly through suppression of c-Jun N-terminal kinase activity and AP-1 binding activity. (PMID:12594282)
  • crystal structure of BMP7 in complex with the extracellular domain (ECD) of the activin type II receptor (PMID:12667445)
  • IGF-1 and OP-1 could be key physiological regulators of MMP-13 gene expression (PMID:12734180)
  • In pulmonary artery smooth muscle cells from pulmonary hypertension patients, the BMP-2- or BMP-7-induced apoptosis was significantly inhibited compared with PASMCs from patients with secondary pulmonary hypertension. (PMID:12740218)
  • BMP-7 is expressed in various breast cancer cell lines in a cell line-specific manner (PMID:12792780)
  • BMP-7 plays an important role in the regulation of anti-inflammatory response in the adult gut tissue. (PMID:12811818)
  • Overall decrease in endogenous OP-1 in degenerated and OA tissue suggests that OP-1 could be one of the factors responsible for normal homeostasis and matrix integrity in cartilage. (PMID:12919879)
  • Modulation of endogenous osteogenic protein-1 (OP-1) by interleukin-1 in adult human articular cartilage. (PMID:12925612)
  • OP-1 stimulated cell proliferation and mRNA expression of several biochemical markers in this ligament cell culture model (PMID:14587033)
  • In the extraskeletal model, newly formed bone was evident in the presence of rhBMP-7 (PMID:14751565)
  • results suggest expression of the Ihh gene, which contains multiple Smad binding sites, may be finely regulated by a gradient of bone morphogenetic protein BMP7 (PMID:14981086)
  • Stimulation of kidney cells with BMP-7 induced hyaluronan synthase 2 mRNA expression and decreased the expression of Hyal1 and Hyal2. (PMID:15100360)
  • The effect of BMP-7 on TGF-beta1 synthesis in TNF-alpha-stimulated cells was abrogated by disruption of CD44-hyaluronan interactions, suggesting that it was due to increased monocyte binding to hyaluronan on the cell surface. (PMID:15574511)
  • To analyze the expression of bone morphogenetic proteins (BMPs) in prostate and breast cancers with established metastasis in bone (PMID:15861517)
  • the prodomain of BMP-7 has a role in targeting the BMP-7 complex to the extracellular matrix (PMID:15929982)
  • BMP7 induced Smad phosphorylation in a dose-dependent manner, with Smad activation clearly demonstrable in prostate adenocarcinoma. (PMID:15994952)
  • BMPs influence the formation of the osteolytic prostate cancer metastases, and treatment modalities that inhibit BMP activity may limit the progression of the lytic component of prostate cancer metastases. (PMID:16126463)
  • Our results are suggesting a possible functional role for BMP7 in breast cancer development. (PMID:16419056)
  • Measurement of OP-1 in joint fluid may have value in the clinical evaluation of joint diseases. (PMID:16646979)
  • BMP7 could restore the homeostatic balance of pSmad signaling found in normal kidneys, thereby preventing or reversing the development of chronic allograft nephropathy. (PMID:16686760)
  • Topical and differential expression of BMP-2/4 and BMP-7 mRNA and protein was found in bursa tissue. (PMID:16719933)
  • BMP-7 expression in the adult human kidney appears to be more restricted than in the fetal situation and predominantly found in the distal nephron. (PMID:16807538)
  • Osteogenic protein-1 (OP-1 has shown particular potential in clinical trials as a bone graft substitute . (PMID:16831023)
  • Recombinant human BMP-7 plays a role in the migration of bone-forming cells. (PMID:16846353)
  • maintenance of renal BMP-7 during the evolution of diabetic nephropathy reduces diabetic renal injury, especially podocyte dropout. The findings also establish a role for endogenous glomerular BMP-7 as an autocrine regulator of podocyte integrity in vivo. (PMID:16899516)
  • BMP7 expression was almost completely absent at the invasive margin of esophageal tumors, but present in the central area. It may antagonize TGF-beta1’s role in invasiveness. (PMID:17018615)
  • strong BMP staining is seen in maturing chondrocytes, and thus may play a role in chondrocyte differentiation and/or apoptosis; BMP release by osteoclasts may promote osteoblastic differentiation at sites of bone remodeling (PMID:17262821)
  • These results indicate that mutations are rare in FGF8 and FGFR2 in hypospadias, but gene variants may influence the risk. (PMID:17264867)
  • Immunohistochemistry of cirrhotic human liver demonstrated upregulated BMP7 protein expression in hepatocytes as compared with normal human liver. (PMID:17415633)
  • Proinvasive activity of BMP7 through SMAD4/src-independent and ERK/Rac/JNK-dependent signaling pathways in colon cancer cells is reported. (PMID:17478078)
  • BMP7 promotes the adipogenic and not the osteogenic or chondrogenic lineage development of human stem cells (PMID:17497692)
  • induction of BMP7 expression is frequent in melanomas and may serve as a novel prognostic marker of progression in melanoma patients (PMID:17522432)
  • BMP-7 was more potent than BMP-2 in inducing chondrogenesis, but the properties of the differentiated tissue were similar in each case (PMID:17530715)
  • The presence of BMP-7 and IL-1Ra antagonized the anti-anabolic effects of lipopolysaccharide (PMID:17530716)
  • Expression of BMP-4 and BMP-7 and their receptors in human ovaries from fetuses as well as adults. (PMID:17624341)
  • Approximately half of the prostate tumors displayed increased copy numbers of the BMP2, BMP5, BMP7, and UC28 gene loci, which may account for their abnormal gene expression patterns in neoplastic prostate tissue. (PMID:17656261)

Cross-species orthologs

4 orthologs

OrganismSymbolGene ID
danio_reriobmp7aENSDARG00000018260
danio_reriobmp7bENSDARG00000063230
mus_musculusBmp7ENSMUSG00000008999
rattus_norvegicusBmp7ENSRNOG00000053384

Paralogs (31): TGFB2 (ENSG00000092969), TGFB1 (ENSG00000105329), BMP5 (ENSG00000112175), BMP8B (ENSG00000116985), TGFB3 (ENSG00000119699), INHBA (ENSG00000122641), INHA (ENSG00000123999), BMP4 (ENSG00000125378), BMP2 (ENSG00000125845), GDF5 (ENSG00000125965), GDF1 (ENSG00000130283), BMP15 (ENSG00000130385), GDF15 (ENSG00000130513), GDF11 (ENSG00000135414), MSTN (ENSG00000138379), INHBE (ENSG00000139269), LEFTY2 (ENSG00000143768), GDF7 (ENSG00000143869), BMP3 (ENSG00000152785), BMP6 (ENSG00000153162), GDF6 (ENSG00000156466), NODAL (ENSG00000156574), INHBB (ENSG00000163083), BMP10 (ENSG00000163217), GDF9 (ENSG00000164404), INHBC (ENSG00000175189), BMP8A (ENSG00000183682), GDF3 (ENSG00000184344), LEFTY1 (ENSG00000243709), GDF2 (ENSG00000263761), GDF10 (ENSG00000266524)

Protein

Protein identifiers

Bone morphogenetic protein 7P18075 (reviewed: P18075)

Alternative names: Osteogenic protein 1

All UniProt accessions (5): P18075, A8K571, B1AKZ9, B1AL00, H0Y4B5

UniProt curated annotations — full annotation on UniProt →

Function. Growth factor of the TGF-beta superfamily that plays important role in various biological processes, including embryogenesis, hematopoiesis, neurogenesis and skeletal morphogenesis. Initiates the canonical BMP signaling cascade by associating with type I receptor ACVR1 and type II receptor ACVR2A. Once all three components are bound together in a complex at the cell surface, ACVR2A phosphorylates and activates ACVR1. In turn, ACVR1 propagates signal by phosphorylating SMAD1/5/8 that travel to the nucleus and act as activators and repressors of transcription of target genes. For specific functions such as growth cone collapse in developing spinal neurons and chemotaxis of monocytes, also uses BMPR2 as type II receptor. Can also signal through non-canonical pathways such as P38 MAP kinase signaling cascade that promotes brown adipocyte differentiation through activation of target genes, including members of the SOX family of transcription factors. Promotes the expression of HAMP, this is repressed by its interaction with ERFE.

Subunit / interactions. Homodimer; disulfide-linked. Interacts with SOSTDC1. Interacts with TWSG1. Interacts with FBN1 (via N-terminal domain) and FBN2. Interacts with type I receptor ACVR1. Interacts with type II receptor ACVR2A. Interacts with NOG; this interaction inhibits canonical BMP signaling. Interacts with SCUBE3. Interacts with ERFE; the interaction inhibits BMP-induced transcription of HAMP. Interacts with TGFBR3.

Subcellular location. Secreted.

Tissue specificity. Expressed in the kidney and bladder. Lower levels seen in the brain.

Post-translational modifications. Several N-termini starting at positions 293, 300, 315 and 316 have been identified by direct sequencing resulting in secretion of different mature forms.

Similarity. Belongs to the TGF-beta family.

RefSeq proteins (1): NP_001710* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR001111TGF-b_propeptideDomain
IPR001839TGF-b_CDomain
IPR015615TGF-beta-likeFamily
IPR017948TGFb_CSConserved_site
IPR029034Cystine-knot_cytokineHomologous_superfamily

Pfam: PF00019, PF00688

UniProt features (28 total): strand 8, disulfide bond 4, helix 4, glycosylation site 4, sequence variant 2, turn 2, signal peptide 1, propeptide 1, chain 1, region of interest 1

Structure

Experimental structures (PDB)

4 structures.

PDBMethodResolution (Å)
1LXIX-RAY DIFFRACTION2
1M4UX-RAY DIFFRACTION2.42
1BMPX-RAY DIFFRACTION2.8
1LX5X-RAY DIFFRACTION3.3

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P18075-F176.500.51

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Disulfide bonds (4): 363–430, 395, 330–396, 359–428

Glycosylation sites (4): 187, 302, 321, 372

Function

Pathways and Gene Ontology

Reactome pathways

7 pathways

IDPathway
R-HSA-2129379Molecules associated with elastic fibres
R-HSA-9844594Transcriptional regulation of brown and beige adipocyte differentiation by EBF2
R-HSA-1266738Developmental Biology
R-HSA-1474244Extracellular matrix organization
R-HSA-1566948Elastic fibre formation
R-HSA-9843743Transcriptional regulation of brown and beige adipocyte differentiation
R-HSA-9843745Adipogenesis

MSigDB gene sets: 553 (showing top): GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_MCMV_INFECTION_UP, GOBP_CARDIAC_CHAMBER_DEVELOPMENT, GOBP_SMAD_PROTEIN_SIGNAL_TRANSDUCTION, GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM, GOBP_DENDRITE_DEVELOPMENT, GOBP_LABYRINTHINE_LAYER_DEVELOPMENT, GOBP_HINDBRAIN_DEVELOPMENT, E2F_Q4_01, GOBP_NEGATIVE_REGULATION_OF_REPRODUCTIVE_PROCESS, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_EMBRYO_DEVELOPMENT_ENDING_IN_BIRTH_OR_EGG_HATCHING, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_CELL_MIGRATION_INVOLVED_IN_HEART_DEVELOPMENT, LEE_NEURAL_CREST_STEM_CELL_DN, GOBP_REGULATION_OF_FAT_CELL_DIFFERENTIATION

GO Biological Process (93): skeletal system development (GO:0001501), osteoblast differentiation (GO:0001649), metanephros development (GO:0001656), ureteric bud development (GO:0001657), mesoderm formation (GO:0001707), mesonephros development (GO:0001823), epithelial to mesenchymal transition (GO:0001837), endocardial cushion formation (GO:0003272), pericardium morphogenesis (GO:0003344), axon guidance (GO:0007411), heart development (GO:0007507), embryonic pattern specification (GO:0009880), positive regulation of gene expression (GO:0010628), negative regulation of striated muscle cell apoptotic process (GO:0010664), positive regulation of epithelial to mesenchymal transition (GO:0010718), dendrite development (GO:0016358), neural fold elevation formation (GO:0021502), embryonic limb morphogenesis (GO:0030326), positive regulation of bone mineralization (GO:0030501), BMP signaling pathway (GO:0030509), positive regulation of epithelial cell differentiation (GO:0030858), hindbrain development (GO:0030902), response to estradiol (GO:0032355), response to vitamin D (GO:0033280), positive regulation of heterotypic cell-cell adhesion (GO:0034116), ameloblast differentiation (GO:0036305), odontogenesis of dentin-containing tooth (GO:0042475), positive regulation of apoptotic process (GO:0043065), response to peptide hormone (GO:0043434), negative regulation of neuron differentiation (GO:0045665), positive regulation of neuron differentiation (GO:0045666), positive regulation of osteoblast differentiation (GO:0045669), negative regulation of Notch signaling pathway (GO:0045746), negative regulation of cell cycle (GO:0045786), negative regulation of mitotic nuclear division (GO:0045839), negative regulation of DNA-templated transcription (GO:0045892), positive regulation of DNA-templated transcription (GO:0045893), positive regulation of transcription by RNA polymerase II (GO:0045944), embryonic camera-type eye morphogenesis (GO:0048596), cardiac muscle tissue development (GO:0048738)

GO Molecular Function (7): cytokine activity (GO:0005125), growth factor activity (GO:0008083), heparin binding (GO:0008201), BMP receptor binding (GO:0070700), protein binding (GO:0005515), protein serine/threonine kinase activator activity (GO:0043539), receptor ligand activity (GO:0048018)

GO Cellular Component (4): extracellular region (GO:0005576), obsolete extracellular space (GO:0005615), extracellular matrix (GO:0031012), vesicle (GO:0031982)

Reactome top-level categories

Rollup of top-5 pathways:

CategoryPathways
Elastic fibre formation1
Transcriptional regulation of brown and beige adipocyte differentiation1
Extracellular matrix organization1
Adipogenesis1
Developmental Biology1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
kidney development2
anatomical structure formation involved in morphogenesis2
receptor ligand activity2
system development1
ossification1
cell differentiation1
mesonephric tubule development1
formation of primary germ layer1
mesoderm morphogenesis1
mesenchymal cell differentiation1
endocardial cushion morphogenesis1
morphogenesis of an epithelial sheet1
embryonic morphogenesis1
pericardium development1
axonogenesis1
neuron projection guidance1
animal organ development1
circulatory system development1
pattern specification process1
embryo development1
gene expression1
regulation of gene expression1
positive regulation of macromolecule biosynthetic process1
negative regulation of muscle cell apoptotic process1
striated muscle cell apoptotic process1
regulation of striated muscle cell apoptotic process1
epithelial to mesenchymal transition1
regulation of epithelial to mesenchymal transition1
positive regulation of cell differentiation1
positive regulation of multicellular organismal process1
neuron projection development1
anatomical structure development1
neural fold formation1
limb morphogenesis1
embryonic appendage morphogenesis1
bone mineralization1
regulation of bone mineralization1
positive regulation of ossification1
positive regulation of biomineral tissue development1
cellular response to BMP stimulus1

Protein interactions and networks

STRING

2952 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
BMP7NOGQ13253997
BMP7BMPR2Q13873997
BMP7BMPR1AP36894996
BMP7ACVR1Q04771995
BMP7ACVR2AP27037993
BMP7BMPR1BP78366993
BMP7FSTP19883989
BMP7ACVR2BQ13705985
BMP7BMP2P12643975
BMP7BMP4P12644953
BMP7CHRDQ9H2X0900
BMP7BMP8AQ7Z5Y6882
BMP7BMP8BP34820879
BMP7ADARB1P78555871
BMP7FBN1P35555859

IntAct

74 interactions, top by confidence:

ABTypeScore
BMP7TRIM27psi-mi:“MI:0915”(physical association)0.670
TRIM27BMP7psi-mi:“MI:0915”(physical association)0.670
BMP7KHDRBS2psi-mi:“MI:0915”(physical association)0.560
NOTCH2NLCBMP7psi-mi:“MI:0915”(physical association)0.560
BMP7KRTAP12-3psi-mi:“MI:0915”(physical association)0.560
BMP7BEGAINpsi-mi:“MI:0915”(physical association)0.560
KRTAP1-3BMP7psi-mi:“MI:0915”(physical association)0.560
BMP7KRTAP5-9psi-mi:“MI:0915”(physical association)0.560
CYSRT1BMP7psi-mi:“MI:0915”(physical association)0.560
BMP7KRTAP10-8psi-mi:“MI:0915”(physical association)0.560
BMP7CCDC125psi-mi:“MI:0915”(physical association)0.560
BMP7KRTAP10-9psi-mi:“MI:0915”(physical association)0.560
BMP7KRTAP9-8psi-mi:“MI:0915”(physical association)0.560
BMP7KRTAP3-1psi-mi:“MI:0915”(physical association)0.560
TRACCOCHpsi-mi:“MI:0914”(association)0.530
PLAURXRCC3psi-mi:“MI:0914”(association)0.530
PRG3ZNF324psi-mi:“MI:0914”(association)0.530
BMP7NOGpsi-mi:“MI:0407”(direct interaction)0.440
BMP7Acvr2apsi-mi:“MI:0407”(direct interaction)0.440
BMP7CCNDBP1psi-mi:“MI:0915”(physical association)0.370
BMP7MTUS2psi-mi:“MI:0915”(physical association)0.370
BMP7NOTCH2NLApsi-mi:“MI:0915”(physical association)0.370
BMP7VWA8psi-mi:“MI:0914”(association)0.350
DKKL1VWA8psi-mi:“MI:0914”(association)0.350
OLFM2ZSWIM8psi-mi:“MI:0914”(association)0.350
OLFM4DDX11L8psi-mi:“MI:0914”(association)0.350
PTPRKMANBApsi-mi:“MI:0914”(association)0.350
TAZMANBApsi-mi:“MI:0914”(association)0.350
SLAMF1RTCApsi-mi:“MI:0914”(association)0.350

BioGRID (108): BMP7 (Two-hybrid), KRTAP5-9 (Two-hybrid), TRIM27 (Two-hybrid), MTUS2 (Two-hybrid), KRTAP10-7 (Two-hybrid), KRTAP10-5 (Two-hybrid), KRTAP10-8 (Two-hybrid), KRTAP10-3 (Two-hybrid), NOTCH2NL (Two-hybrid), BMP7 (Affinity Capture-MS), BMP7 (Affinity Capture-MS), BMP7 (Affinity Capture-MS), UBR1 (Affinity Capture-MS), VWA8 (Affinity Capture-MS), GSTCD (Affinity Capture-MS)

ESM2 similar proteins: A8WCC4, O19011, O93449, P01137, P03970, P04088, P04202, P07200, P07995, P08476, P09529, P09531, P09533, P10600, P15203, P16047, P17125, P17246, P17247, P17491, P18075, P18331, P18341, P23359, P27092, P27093, P34820, P34821, P42917, P43032, P49002, P50414, P54831, P55102, P55103, P55104, P57785, Q04906, Q04998, Q04999

Diamond homologs: A1C2U3, A1C2U6, A1C2U7, A1C2V0, A1C2V5, A8E7N9, G5EEL5, O08689, O14793, O18828, O18830, O18831, O18836, O35312, O42220, O42221, O42222, O46576, O61643, O95390, O95393, P09534, P12644, P12645, P17491, P18075, P20722, P20863, P22003, P22004, P22444, P23359, P27091, P27539, P35621, P43026, P43027, P43028, P43029, P48970

SIGNOR signaling

25 interactions.

AEffectBMechanism
BMP7up-regulatesACTR2binding
BMP7“down-regulates quantity by repression”DLK1“transcriptional regulation”
BMP7up-regulatesBrown_adipogenesis
BMP7up-regulatesMAPK14
BMP7“up-regulates quantity by expression”PPARGC1A“transcriptional regulation”
BMP7“up-regulates quantity by expression”PRDM16“transcriptional regulation”
BMP7“up-regulates quantity by expression”UCP1“transcriptional regulation”
BMP7up-regulatesPRDM16“transcriptional regulation”
BMP7up-regulatesPPARGC1A“transcriptional regulation”
BMP7up-regulatesUCP1“transcriptional regulation”
BMP7down-regulatesDLK1“transcriptional regulation”
BMP7up-regulatesBMPR1A/1B/2binding
BMP7“up-regulates activity”BMPR1A/1B/2binding
BMP7up-regulatesBMP7binding
BMP7“down-regulates quantity by repression”MMP13“transcriptional regulation”
BMP7up-regulatesBMPR2binding
BMP7up-regulatesACVR2Abinding
BMP7up-regulatesACVR2Bbinding
BMP7“up-regulates quantity by expression”PPARG“transcriptional regulation”
BMP7up-regulatesACVR1/BMPR2binding
BMP7up-regulatesACVR1binding
SOSTDC1“down-regulates activity”BMP7
SMAD1/4“up-regulates quantity by expression”BMP7“transcriptional regulation”
NOG“down-regulates activity”BMP7binding
SOX17/POU5F1“up-regulates quantity by expression”BMP7“transcriptional regulation”

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 54 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
Keratinization711.5×3e-04

Disease & clinical

Cancer significance

Clinical variants and AI predictions

ClinVar

140 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic2
Likely pathogenic0
Uncertain significance73
Likely benign25
Benign34

Top pathogenic / likely-pathogenic (2)

Variant IDHGVSClassification
1702933NM_001719.3(BMP7):c.254A>T (p.Asp85Val)Pathogenic
1702934NM_001719.3(BMP7):c.523C>T (p.Arg175Trp)Pathogenic

SpliceAI

2055 predictions. Top by Δscore:

VariantEffectΔscore
20:57171105:GGACC:Gacceptor_loss1.0000
20:57171106:GACC:Gacceptor_loss1.0000
20:57171107:ACCTG:Aacceptor_loss1.0000
20:57171108:CCT:Cacceptor_loss1.0000
20:57171109:C:CCacceptor_gain1.0000
20:57171109:C:Gacceptor_loss1.0000
20:57171110:T:Cacceptor_loss1.0000
20:57171115:C:CTacceptor_gain1.0000
20:57171117:C:CTacceptor_gain1.0000
20:57173198:A:ACdonor_gain1.0000
20:57173199:C:CCdonor_gain1.0000
20:57173199:CCAG:Cdonor_gain1.0000
20:57173306:CAGTC:Cacceptor_gain1.0000
20:57173309:TC:Tacceptor_gain1.0000
20:57173309:TCC:Tacceptor_loss1.0000
20:57173310:CC:Cacceptor_gain1.0000
20:57173310:CCT:Cacceptor_loss1.0000
20:57173311:C:CCacceptor_gain1.0000
20:57174925:CCTTA:Cdonor_loss1.0000
20:57174926:CTTAC:Cdonor_loss1.0000
20:57174927:TTACC:Tdonor_loss1.0000
20:57174928:TAC:Tdonor_loss1.0000
20:57174929:A:ATdonor_loss1.0000
20:57175039:CCAG:Cacceptor_gain1.0000
20:57175040:CAG:Cacceptor_gain1.0000
20:57175041:A:Tacceptor_gain1.0000
20:57183748:T:TAdonor_gain1.0000
20:57202473:A:ACdonor_gain1.0000
20:57202473:ACCAT:Adonor_gain1.0000
20:57202474:C:CCdonor_gain1.0000

AlphaMissense

2872 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
20:57170965:G:CC430W1.000
20:57170966:C:AC430F1.000
20:57170966:C:GC430S1.000
20:57170966:C:TC430Y1.000
20:57170967:A:GC430R1.000
20:57170967:A:TC430S1.000
20:57170969:C:TG429D1.000
20:57170970:C:AG429C1.000
20:57170970:C:GG429R1.000
20:57170971:A:CC428W1.000
20:57170972:C:AC428F1.000
20:57170972:C:GC428S1.000
20:57170972:C:TC428Y1.000
20:57170973:A:GC428R1.000
20:57170973:A:TC428S1.000
20:57170981:A:TV425D1.000
20:57171005:A:GL417P1.000
20:57171011:A:TV415D1.000
20:57171035:A:GL407P1.000
20:57171035:A:TL407H1.000
20:57171038:A:TV406D1.000
20:57171053:A:GL401P1.000
20:57171062:G:TP398H1.000
20:57171067:A:CC396W1.000
20:57171068:C:AC396F1.000
20:57171068:C:GC396S1.000
20:57171068:C:TC396Y1.000
20:57171069:A:GC396R1.000
20:57171069:A:TC396S1.000
20:57173201:A:GL382P1.000

dbSNP variants (sampled 300 via entrez): RS1000069852 (20:57256642 T>A,G), RS1000074303 (20:57225309 A>G), RS1000085727 (20:57219658 G>T), RS1000085941 (20:57180904 A>G), RS1000131296 (20:57245172 T>C), RS1000135703 (20:57254321 C>G), RS1000155338 (20:57220913 G>A), RS1000227383 (20:57213545 C>T), RS1000240693 (20:57216670 G>A), RS1000259280 (20:57252960 G>A), RS1000336983 (20:57247965 T>C), RS1000350194 (20:57256967 G>A), RS1000354552 (20:57192350 G>A), RS1000365857 (20:57174315 C>T), RS1000449807 (20:57185250 G>A)

Disease associations

OMIM: gene MIM:112267 | disease phenotypes: MIM:614429, MIM:615779, MIM:187500, MIM:614433, MIM:610805, MIM:616892, MIM:106700

GenCC curated gene-disease

DiseaseClassificationInheritance
multiple congenital anomalies/dysmorphic syndromeModerateAutosomal dominant
hypospadiasLimitedAutosomal dominant
isolated craniosynostosisLimitedAutosomal dominant
Mayer-Rokitansky-Kuster-Hauser syndromeLimitedAutosomal dominant
congenital anomaly of kidney and urinary tractLimitedAutosomal dominant

Mondo (11): ventricular septal defect 1 (MONDO:0013746), congenital heart defects, multiple types, 4 (MONDO:0014344), tetralogy of fallot (MONDO:0008542), atrial septal defect 8 (MONDO:0013750), congenital anomaly of kidney and urinary tract (MONDO:0019719), nephrotic syndrome, type 12 (MONDO:0014817), congenital total pulmonary venous return anomaly (MONDO:0007130), hypospadias (MONDO:0005345), multiple congenital anomalies/dysmorphic syndrome (MONDO:0019042), isolated craniosynostosis (MONDO:0015337), Mayer-Rokitansky-Kuster-Hauser syndrome (MONDO:0017771)

Orphanet (5): Tetralogy of Fallot (Orphanet:3303), Interatrial communication (Orphanet:1478), Renal or urinary tract malformation (Orphanet:93545), Hereditary steroid-resistant nephrotic syndrome (Orphanet:656), Congenital total pulmonary venous return anomaly (Orphanet:99125)

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

23 associations (top):

StudyTraitp-value
GCST000509_3Response to citalopram treatment3.000000e-06
GCST000509_5Response to citalopram treatment1.000000e-06
GCST001134_20White blood cell types9.000000e-07
GCST003075_72Cognitive decline rate in late mild cognitive impairment2.000000e-07
GCST003472_3Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder5.000000e-06
GCST003996_35Monobrow2.000000e-19
GCST003999_9Nose size3.000000e-09
GCST004070_4Cerebrospinal P-tau181p levels8.000000e-08
GCST004611_164High light scatter reticulocyte count6.000000e-14
GCST004612_184High light scatter reticulocyte percentage of red cells7.000000e-13
GCST004619_14Reticulocyte fraction of red cells4.000000e-20
GCST004622_89Reticulocyte count8.000000e-22
GCST004780_2Cortisol levels (saliva)9.000000e-06
GCST006186_8Systolic blood pressure x smoking status (current vs non-current) interaction (1df test)3.000000e-08
GCST006193_7Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)6.000000e-07
GCST006194_9Diastolic blood pressure x smoking status (current vs non-current) interaction (1df test)7.000000e-06
GCST006195_94Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)4.000000e-12
GCST009281_5Microalbuminuria in type 1 diabetes3.000000e-09
GCST010241_423Apolipoprotein A1 levels2.000000e-12
GCST010242_336HDL cholesterol levels3.000000e-13
GCST010298_2Metopic nonsyndromic craniosynostosis3.000000e-09
GCST012202_6Distal/Left-sided colorectal cancer5.000000e-09
GCST012205_6Distal colorectal cancer9.000000e-08

EFO canonical traits (13, from GWAS)

EFO IDTrait name
EFO:0004842eosinophil count
EFO:0007710cognitive decline measurement
EFO:0007679oppositional defiant disorder measurement
EFO:0007906synophrys measurement
EFO:0004763p-tau measurement
EFO:0007986reticulocyte count
EFO:0005843cortisol measurement
EFO:0006335systolic blood pressure
EFO:0006527smoking status measurement
EFO:0006336diastolic blood pressure
EFO:0004614apolipoprotein A 1 measurement
EFO:0004612high density lipoprotein cholesterol measurement
EFO:0008511metopic craniosynostosis

MeSH disease descriptors (3)

DescriptorNameTree numbers
D007021HypospadiasC12.050.351.875.466; C12.100.500.494.400; C12.200.294.494.400; C12.200.706.516; C12.800.516; C16.131.939.516
D013771Tetralogy of FallotC14.240.400.849; C14.280.400.849; C16.131.240.400.849
C566906Cakut (supp.)

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 1 entry (VIP=true, CPIC=false)

PharmGKB clinical annotations

1 annotations.

VariantTypeLevelDrugsPhenotypes
rs79085477Toxicity3cyclophosphamide;cytarabine;daunorubicin;dexamethasone;doxorubicin;methotrexate;pegaspargase;prednisone;thioguanine;vincristineAcute lymphoblastic leukemia;Osteonecrosis

PharmGKB variants

1 variants.

VariantGenesLevelScore#Clin annotsDrugs
rs79085477BMP730.001cyclophosphamide;cytarabine;daunorubicin;dexamethasone;doxorubicin;methotrexate;pegaspargase;prednisone;thioguanine;vincristine

CTD chemical–gene interactions

65 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Estradiolaffects cotreatment, decreases reaction, increases expression, increases secretion, decreases expression6
Valproic Acidaffects cotreatment, increases expression, affects expression6
trichostatin Aaffects cotreatment, increases expression3
Resveratrolaffects cotreatment, decreases expression, increases chemical synthesis, increases reaction3
Tretinoindecreases expression, increases expression3
aristolochic acid Idecreases expression, affects cotreatment, decreases reaction, increases expression, increases reaction (+2 more)2
sodium arseniteaffects methylation, increases expression2
mercuric bromideincreases expression, affects cotreatment2
entinostatincreases expression, affects cotreatment2
Decitabinedecreases methylation, increases expression2
Panobinostataffects cotreatment, increases expression2
Benzo(a)pyreneaffects methylation, decreases expression, increases methylation2
Phenylmercuric Acetateaffects cotreatment, increases expression2
Silicon Dioxidedecreases reaction, increases expression, decreases expression2
methylmercuric chlorideincreases expression1
propionaldehydeincreases expression1
bisphenol Adecreases expression1
arseniteincreases expression1
afimoxifenedecreases expression, decreases reaction1
11-nor-delta(9)-tetrahydrocannabinol-9-carboxylic acidaffects methylation, increases abundance1
butyraldehydeincreases expression1
2,3-bis(3’-hydroxybenzyl)butyrolactoneaffects cotreatment, decreases expression1
aflatoxin B2decreases methylation, increases methylation1
5,5’-bis(8-(phenylamino)-1-naphthalenesulfonate)affects binding, increases reaction1
aristolochic acid IIdecreases reaction, increases expression, increases reaction, affects cotreatment1
pentanalincreases expression1
octa-2,4,6-trienoic aciddecreases expression1
monomethylarsonous acidincreases expression1
4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamideaffects cotreatment, increases expression1
dorsomorphinaffects cotreatment, increases expression1

Cellosaurus cell lines

6 cell lines: 3 embryonic stem cell, 2 cancer cell line, 1 transformed cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_A0J5SEES3-1V human BMP7, clone1Embryonic stem cellMale
CVCL_A0J6SEES3-1V human BMP7, clone2Embryonic stem cellMale
CVCL_A0J7SEES3-1V human BMP7, clone3Embryonic stem cellMale
CVCL_D9A5Ubigene HEK293 BMP7 KOTransformed cell lineFemale
CVCL_SF37HAP1 BMP7 (-) 1Cancer cell lineMale
CVCL_XM04HAP1 BMP7 (-) 2Cancer cell lineMale

Clinical trials (associated diseases)

180 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT02848157PHASE4COMPLETEDEffects of Dexmedetomidine as Adjunct to Pudendal Block for Pediatric Penile Surgery
NCT02861950PHASE4COMPLETEDDoes Caudal Block Increase the Incidence of Urethrocutaneous Fistula Formation Following Hypospadias Repair in Infants?
NCT03902249PHASE4COMPLETEDEffect of Intravenous Dexamethasone With Pudendal Nerve Block on Postoperative Pain in Pediatric Hypospadias Repair
NCT05708989PHASE4WITHDRAWNCaudal vs. Pudendal Block in Peds GU
NCT05837000PHASE4UNKNOWNDexmedetomidine, Ketamine and Magnesium Sulphate in Caudal Block for Hypospadias Repair
NCT05922605PHASE4UNKNOWNAnalgesic Effects of Caudal S-ketamine for Supplementation of Ropivacaine Caudal Analgesia in Children With Hypospadias
NCT07121764PHASE4COMPLETEDPostoperative Pain Relief in Children: Comparing Caudal Bupivacaine Alone Versus Bupivacaine With Dexmedetomidine for Infra-Umbilical Surgeries Under General Anesthesia
NCT07240649PHASE4NOT_YET_RECRUITINGOutcomes From Hyperbaric Oxygen (HBO2) Treatment for Emerging Indications
NCT01971593PHASE4TERMINATEDThe Effects of Eplerenone on Markers of Myocardial Fibrosis in Adult Congenital Heart Disease
NCT01370798PHASE3COMPLETEDLocal Oestrogen Versus Placebo as Preoperative Treatment in Patients With Severe Hypospadias: Effects on Post-operative Complications
NCT04423107PHASE3UNKNOWNAssessment of Postop Hypospadias Pain
NCT04826484PHASE3TERMINATEDOpioid Reduction Initiative During Outpatient Pediatric Urologic Procedures Using Exparel
NCT07197203PHASE3NOT_YET_RECRUITINGComparison of Caudal Block and Sacral Erector Spinae Plane Block With Dexmedetomidine in Pediatric Penile Hypospadias Repair
NCT03277430PHASE3UNKNOWNUterus Transplantation From Live Donors and From Deceased Donors - Clinical Study
NCT00564993PHASE3TERMINATEDCardiac Function Under Stress for Early Detection of the Right Ventricular Insufficiency After Repair of Tetralogy of Fallot
NCT05253456PHASE2COMPLETEDModified Second Layer Repair for Distal Penile Hypospadias
NCT00848393PHASE2COMPLETEDMeasures to Lower the Stress Response in Pediatric Cardiac Surgery
NCT02010905PHASE2UNKNOWNRight Ventricular Dysfunction in Tetralogy of Fallot: Inhibition of the Renin-angiotensin-aldosterone System
NCT04479371PHASE1WITHDRAWNLiposomal Bupivacaine vs Standard Penile Block for Hypospadias Repair
NCT04115345PHASE1COMPLETEDA Study of a Renal Autologous Cell Therapy (REACT) in Patients With Chronic Kidney Disease (CKD) From Congenital Anomalies of the Kidney and Urinary Tract (CAKUT).
NCT05694169PHASE1TERMINATEDA Study of Participants With Chronic Kidney Disease Previously Treated With REACT
NCT00573066PHASE1COMPLETEDUnderstanding Dexmedetomidine In Infants Post-Operative From Cardiac Surgery
NCT01915277PHASE1COMPLETEDA Phase I Study of Dexmedetomidine Bolus and Infusion in Corrective Infant Cardiac Surgery: Safety and Pharmacokinetics
NCT04713657PHASE1RECRUITINGBeta-blocker Administration for Cardiomyocyte Division
NCT02752308PHASE2/PHASE3COMPLETEDEffectiveness of Caudal Epidural Block on Intraoperative Blood Loss During Hypospadias Repair
NCT04876976PHASE2/PHASE3COMPLETEDIsoamyl 2-Cyanoacrylate in the Urethro-cutaneous Fistula Repair
NCT05093166PHASE1/PHASE2TERMINATEDClinical Trial to Assess the Safety and Efficacy of Investigational Product in Patients Due to Hypospadias Treatment Failure
NCT04196400EARLY_PHASE1UNKNOWNThe Role of Local Long Acting Corticosteroid Injection in Hypospadias Surgery.
NCT01762007Not specifiedWITHDRAWNThe Change of the Detrusor Thickness After Hypospadias Repair - Comparison With the Normal Control Group
NCT01875640Not specifiedCOMPLETEDDecision Support for Parents Receiving Information About Child’s Rare Disease
NCT02040389Not specifiedCOMPLETEDVisual Guidelines and Tutoring in Pediatric Urological Surgery
NCT02096159Not specifiedACTIVE_NOT_RECRUITINGProphylactic Antibiotics or Placebo After Hypospadias Repair
NCT02103712Not specifiedCOMPLETEDLong Term Outcome of Hypospadias Repair
NCT02162810Not specifiedTERMINATEDEffect of Steroids on Post-Operative Complications Following Proximal Hypospadias Repair
NCT02164682Not specifiedCOMPLETEDThe Effect of Caudal Block on the Postoperative Complications in Pediatric Patients After Hypospadias Repair
NCT02495090Not specifiedCOMPLETEDHypospadias and Exome: Identification of New Genes for Familial Hypospadias
NCT02497963Not specifiedUNKNOWNForeskin Graft Tubularized Incised Plate Urethroplasty vs Tubularized Incised Plate for Primary Hypospadias (FGTIP-TIP)
NCT02512887Not specifiedUNKNOWNCaudal vs Local Anesthesia in Hypospadias
NCT02593903Not specifiedCOMPLETEDAntibiotic Use Following Distal and Mid-shaft Hypospadias Repair
NCT02805491Not specifiedCOMPLETEDInfluence of Pesticide Exposure on the Occurrence of Hypospadias in Newborns in Picardie