BNAT1

Summary

BNAT1 (breast cancer associated ESR1 regulating natural antisense transcript 1, HGNC:56666) is a long non-coding RNA gene on chromosome 21q22.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56666
Approved symbol	BNAT1
Name	breast cancer associated ESR1 regulating natural antisense transcript 1
Location	21q22.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	LL21NC02-21A1.1
Ensembl gene	ENSG00000273796
Ensembl biotype	lncRNA
Entrez	101928745
RNAcentral	URS00026A1FD4 — lncRNA, 887 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000617004

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000617004 — 1 exons

Exon	Start	End
ENSE00003981211	45403809	45404943

Expression profiles

Bgee: expression breadth ubiquitous, 126 present calls, max score 86.65.

Top tissues by expression

126 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left ovary	UBERON:0002119	86.65	gold quality
metanephros cortex	UBERON:0010533	86.07	gold quality
tibial artery	UBERON:0007610	86.04	gold quality
popliteal artery	UBERON:0002250	86.02	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.86	silver quality
ovary	UBERON:0000992	84.62	gold quality
right ovary	UBERON:0002118	84.32	gold quality
right coronary artery	UBERON:0001625	84.21	gold quality
ascending aorta	UBERON:0001496	81.77	gold quality
left coronary artery	UBERON:0001626	81.76	gold quality
thoracic aorta	UBERON:0001515	81.65	gold quality
endocervix	UBERON:0000458	81.63	gold quality
body of pancreas	UBERON:0001150	80.86	gold quality
adult mammalian kidney	UBERON:0000082	80.82	gold quality
uterine cervix	UBERON:0000002	79.49	gold quality
left uterine tube	UBERON:0001303	79.48	gold quality
kidney	UBERON:0002113	78.97	gold quality
descending thoracic aorta	UBERON:0002345	78.74	gold quality
ectocervix	UBERON:0012249	78.44	gold quality
omental fat pad	UBERON:0010414	77.84	gold quality
adenohypophysis	UBERON:0002196	77.68	gold quality
gall bladder	UBERON:0002110	77.65	gold quality
adipose tissue	UBERON:0001013	77.41	gold quality
subcutaneous adipose tissue	UBERON:0002190	77.21	gold quality
right uterine tube	UBERON:0001302	76.40	gold quality
cortex of kidney	UBERON:0001225	76.33	gold quality
pituitary gland	UBERON:0000007	75.90	gold quality
myometrium	UBERON:0001296	75.58	gold quality
fallopian tube	UBERON:0003889	75.31	gold quality
left adrenal gland cortex	UBERON:0035825	75.23	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.71

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.