BRINP3-DT

Summary

BRINP3-DT (BRINP3 divergent transcript, HGNC:50577) is a long non-coding RNA gene on chromosome 1q31.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50577
Approved symbol	BRINP3-DT
Name	BRINP3 divergent transcript
Location	1q31.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000237457
Ensembl biotype	lncRNA
Entrez	101929120
RNAcentral	URS000075D76F — lncRNA, 1356 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 26 — 26 lncRNA

ENST00000424735, ENST00000436905, ENST00000784598, ENST00000784599, ENST00000784600, ENST00000784601, ENST00000784602, ENST00000784603, ENST00000784604, ENST00000784605, ENST00000784606, ENST00000784607, ENST00000784608, ENST00000784609, ENST00000784610, ENST00000784611, ENST00000784612, ENST00000784613, ENST00000784614, ENST00000784615, ENST00000784616, ENST00000784617, ENST00000784618, ENST00000784619, ENST00000784620, ENST00000784621

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000424735 — 2 exons

Exon	Start	End
ENSE00004159504	190480345	190481554
ENSE00004159532	190478094	190479140

Expression profiles

Bgee: expression breadth ubiquitous, 126 present calls, max score 83.84.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.3679 / max 27.7217, expressed in 137 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
7407	0.1814	83
7408	0.1336	68
7406	0.0529	37

Top tissues by expression

215 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
amygdala	UBERON:0001876	83.84	gold quality
sperm	CL:0000019	83.71	gold quality
anterior cingulate cortex	UBERON:0009835	83.22	gold quality
right frontal lobe	UBERON:0002810	81.41	gold quality
nucleus accumbens	UBERON:0001882	81.00	gold quality
Brodmann (1909) area 9	UBERON:0013540	80.78	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	79.94	gold quality
right hemisphere of cerebellum	UBERON:0014890	79.89	gold quality
hypothalamus	UBERON:0001898	79.72	gold quality
cerebellar hemisphere	UBERON:0002245	79.66	gold quality
cerebellar cortex	UBERON:0002129	79.42	gold quality
caudate nucleus	UBERON:0001873	79.31	gold quality
cortical plate	UBERON:0005343	79.20	gold quality
prefrontal cortex	UBERON:0000451	79.07	gold quality
cerebellum	UBERON:0002037	78.24	gold quality
putamen	UBERON:0001874	78.05	gold quality
neocortex	UBERON:0001950	77.43	gold quality
frontal cortex	UBERON:0001870	76.56	gold quality
cerebral cortex	UBERON:0000956	75.78	gold quality
forebrain	UBERON:0001890	75.61	gold quality
brain	UBERON:0000955	75.39	gold quality
ganglionic eminence	UBERON:0004023	74.41	gold quality
ventricular zone	UBERON:0003053	73.94	gold quality
temporal lobe	UBERON:0001871	73.46	gold quality
Ammon’s horn	UBERON:0001954	73.02	gold quality
left testis	UBERON:0004533	72.29	gold quality
substantia nigra	UBERON:0002038	71.55	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	70.61	gold quality
right testis	UBERON:0004534	69.96	gold quality
midbrain	UBERON:0001891	69.67	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.63

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.