BRPF3-AS1

Summary

BRPF3-AS1 (BRPF3 antisense RNA 1, HGNC:55591) is a long non-coding RNA gene on chromosome 6p21.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55591
Approved symbol	BRPF3-AS1
Name	BRPF3 antisense RNA 1
Location	6p21.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000246982
Ensembl biotype	lncRNA
Entrez	102723648
RNAcentral	URS00026A1A22 — lncRNA, 2962 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 43 — 43 lncRNA

ENST00000499560, ENST00000526611, ENST00000660917, ENST00000816533, ENST00000816534, ENST00000816535, ENST00000816536, ENST00000816537, ENST00000816538, ENST00000816539, ENST00000816540, ENST00000816541, ENST00000816542, ENST00000816543, ENST00000816544, ENST00000816545, ENST00000816546, ENST00000816547, ENST00000816548, ENST00000816549, ENST00000816550, ENST00000816551, ENST00000816552, ENST00000816553, ENST00000816554, ENST00000816555, ENST00000816556, ENST00000816557, ENST00000816558, ENST00000816559, ENST00000816560, ENST00000816561, ENST00000816562, ENST00000816563, ENST00000816565, ENST00000816567, ENST00000816568, ENST00000816569, ENST00000816570, ENST00000816571, ENST00000816572, ENST00000816573, ENST00000816574

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000499560 — 4 exons

Exon	Start	End
ENSE00001962281	36196037	36196170
ENSE00001987204	36158068	36158941
ENSE00001991322	36179617	36179707
ENSE00002166135	36197075	36197205

Expression profiles

Bgee: expression breadth ubiquitous, 170 present calls, max score 91.92.

Top tissues by expression

241 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	91.92	gold quality
right testis	UBERON:0004534	88.48	gold quality
left testis	UBERON:0004533	88.22	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.81	gold quality
testis	UBERON:0000473	84.59	gold quality
right hemisphere of cerebellum	UBERON:0014890	82.75	gold quality
cerebellar hemisphere	UBERON:0002245	82.16	gold quality
cerebellar cortex	UBERON:0002129	81.89	gold quality
right uterine tube	UBERON:0001302	81.27	gold quality
pituitary gland	UBERON:0000007	80.31	gold quality
cerebellum	UBERON:0002037	79.94	gold quality
adenohypophysis	UBERON:0002196	79.50	gold quality
left ovary	UBERON:0002119	78.65	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	78.47	gold quality
hindlimb stylopod muscle	UBERON:0004252	77.69	gold quality
gastrocnemius	UBERON:0001388	77.67	gold quality
muscle of leg	UBERON:0001383	77.54	gold quality
right frontal lobe	UBERON:0002810	77.52	gold quality
right ovary	UBERON:0002118	77.10	gold quality
right adrenal gland cortex	UBERON:0035827	76.72	gold quality
right adrenal gland	UBERON:0001233	76.58	gold quality
spinal cord	UBERON:0002240	76.45	gold quality
Brodmann (1909) area 9	UBERON:0013540	75.29	gold quality
body of uterus	UBERON:0009853	75.11	gold quality
granulocyte	CL:0000094	74.94	gold quality
endocervix	UBERON:0000458	74.73	gold quality
sperm	CL:0000019	74.54	gold quality
putamen	UBERON:0001874	74.38	gold quality
left adrenal gland cortex	UBERON:0035825	74.37	gold quality
stromal cell of endometrium	CL:0002255	74.26	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.05

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.