BTF3-DT

Summary

BTF3-DT (BTF3 divergent transcript, HGNC:55211) is a long non-coding RNA gene on chromosome 5q13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55211
Approved symbol	BTF3-DT
Name	BTF3 divergent transcript
Location	5q13.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000272525
Ensembl biotype	lncRNA
Entrez	118568828
RNAcentral	URS00026A1B80 — lncRNA, 768 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000607001, ENST00000814954, ENST00000814955, ENST00000814956, ENST00000814957, ENST00000814958, ENST00000814959

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000607001 — 1 exons

Exon	Start	End
ENSE00004216440	73496941	73498874

Expression profiles

Bgee: expression breadth ubiquitous, 160 present calls, max score 88.15.

FANTOM5 (CAGE): breadth broad, TPM avg 1.3174 / max 23.7365, expressed in 741 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
62058	1.3174	741

Top tissues by expression

251 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	88.15	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.96	gold quality
cortical plate	UBERON:0005343	69.65	gold quality
left testis	UBERON:0004533	69.44	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	69.32	gold quality
islet of Langerhans	UBERON:0000006	69.10	gold quality
ganglionic eminence	UBERON:0004023	68.91	gold quality
right testis	UBERON:0004534	68.68	gold quality
ventricular zone	UBERON:0003053	68.16	gold quality
testis	UBERON:0000473	68.00	gold quality
prefrontal cortex	UBERON:0000451	67.75	gold quality
adenohypophysis	UBERON:0002196	67.52	gold quality
pituitary gland	UBERON:0000007	67.02	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	66.98	gold quality
spinal cord	UBERON:0002240	66.68	gold quality
Brodmann (1909) area 9	UBERON:0013540	66.56	gold quality
nucleus accumbens	UBERON:0001882	66.52	gold quality
mucosa of stomach	UBERON:0001199	66.14	gold quality
bone marrow cell	CL:0002092	66.06	silver quality
putamen	UBERON:0001874	66.00	gold quality
hypothalamus	UBERON:0001898	65.80	gold quality
secondary oocyte	CL:0000655	65.44	gold quality
left adrenal gland cortex	UBERON:0035825	65.20	gold quality
caudate nucleus	UBERON:0001873	64.88	gold quality
gastrocnemius	UBERON:0001388	64.86	gold quality
cerebellar hemisphere	UBERON:0002245	64.83	gold quality
right hemisphere of cerebellum	UBERON:0014890	64.79	gold quality
cerebellar cortex	UBERON:0002129	64.77	gold quality
muscle of leg	UBERON:0001383	64.68	gold quality
lower esophagus muscularis layer	UBERON:0035833	64.67	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.11

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.