BZW2
gene geneOn this page
Also known as HSPC028MST017MSTP0175MP1
Summary
BZW2 (basic leucine zipper and W2 domains 2, HGNC:18808) is a protein-coding gene on chromosome 7p21.1, encoding eIF5-mimic protein 1 (Q9Y6E2). Translation initiation regulator which represses non-AUG initiated translation and repeat-associated non-AUG (RAN) initiated translation by acting as a competitive inhibitor of eukaryotic translation initiation factor 5 (EIF5) function.
Enables cadherin binding activity. Involved in regulation of translational initiation. Located in cytoplasm.
Source: NCBI Gene 28969 — RefSeq curated summary.
At a glance
- GWAS associations: 29
- Clinical variants (ClinVar): 63 total
- Druggable target: yes
- MANE Select transcript:
NM_014038
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:18808 |
| Approved symbol | BZW2 |
| Name | basic leucine zipper and W2 domains 2 |
| Location | 7p21.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | HSPC028, MST017, MSTP017, 5MP1 |
| Ensembl gene | ENSG00000136261 |
| Ensembl biotype | protein_coding |
| OMIM | 619275 |
| Entrez | 28969 |
Gene structure
Transcript identifiers
Ensembl transcripts: 22 — 18 protein_coding, 2 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined, 1 retained_intron
ENST00000258761, ENST00000405202, ENST00000407633, ENST00000415365, ENST00000430000, ENST00000432311, ENST00000433922, ENST00000436868, ENST00000437745, ENST00000438834, ENST00000446596, ENST00000480517, ENST00000630952, ENST00000897357, ENST00000897358, ENST00000897359, ENST00000897360, ENST00000916421, ENST00000916422, ENST00000948943, ENST00000948944, ENST00000948945
RefSeq mRNA: 5 — MANE Select: NM_014038
NM_001159767, NM_001362717, NM_001362718, NM_001362719, NM_014038
CCDS: CCDS5362, CCDS87482
Canonical transcript exons
ENST00000258761 — 12 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001180304 | 16646181 | 16646288 |
| ENSE00001705246 | 16685905 | 16686040 |
| ENSE00003589155 | 16704547 | 16704669 |
| ENSE00003611972 | 16696915 | 16697061 |
| ENSE00003663050 | 16698048 | 16698186 |
| ENSE00003681719 | 16689797 | 16689906 |
| ENSE00003689117 | 16706060 | 16706517 |
| ENSE00003705849 | 16682780 | 16682845 |
| ENSE00003707126 | 16681301 | 16681404 |
| ENSE00003707358 | 16665437 | 16665501 |
| ENSE00003708571 | 16674412 | 16674588 |
| ENSE00003789067 | 16694834 | 16695004 |
Expression profiles
Bgee: expression breadth ubiquitous, 291 present calls, max score 99.28.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 88.9435 / max 890.7861, expressed in 1826 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 77320 | 88.4459 | 1826 |
| 77322 | 0.4976 | 149 |
Top tissues by expression
292 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 99.28 | gold quality |
| biceps brachii | UBERON:0001507 | 99.27 | gold quality |
| heart right ventricle | UBERON:0002080 | 99.19 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 99.18 | gold quality |
| triceps brachii | UBERON:0001509 | 99.07 | gold quality |
| vastus lateralis | UBERON:0001379 | 99.01 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 98.90 | gold quality |
| placenta | UBERON:0001987 | 98.89 | gold quality |
| gluteal muscle | UBERON:0002000 | 98.86 | gold quality |
| body of tongue | UBERON:0011876 | 98.84 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 98.72 | gold quality |
| deltoid | UBERON:0001476 | 98.72 | gold quality |
| diaphragm | UBERON:0001103 | 98.71 | gold quality |
| myocardium | UBERON:0002349 | 98.56 | gold quality |
| cortical plate | UBERON:0005343 | 98.54 | gold quality |
| cardiac ventricle | UBERON:0002082 | 98.49 | gold quality |
| heart left ventricle | UBERON:0002084 | 98.47 | gold quality |
| tibialis anterior | UBERON:0001385 | 98.46 | gold quality |
| apex of heart | UBERON:0002098 | 98.44 | gold quality |
| quadriceps femoris | UBERON:0001377 | 98.39 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 98.38 | gold quality |
| muscle tissue | UBERON:0002385 | 98.23 | gold quality |
| muscle organ | UBERON:0001630 | 97.78 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 97.78 | gold quality |
| tongue | UBERON:0001723 | 97.76 | gold quality |
| gastrocnemius | UBERON:0001388 | 97.69 | gold quality |
| vena cava | UBERON:0004087 | 97.60 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 97.52 | gold quality |
| muscle of leg | UBERON:0001383 | 97.47 | gold quality |
| cardiac atrium | UBERON:0002081 | 97.39 | gold quality |
Single-cell (SCXA)
Detected in 7 experiment(s), a significant marker in 6.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-6701 | yes | 85.40 |
| E-HCAD-4 | yes | 65.09 |
| E-HCAD-10 | yes | 36.63 |
| E-MTAB-6678 | yes | 16.25 |
| E-CURD-112 | yes | 8.44 |
| E-ENAD-20 | no | 581.73 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
1 targets.
| Target | Regulation |
|---|---|
| ATF4 | Activation |
miRNA regulators (miRDB)
27 targeting BZW2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-12118 | 100.00 | 65.88 | 1270 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-3173-3P | 99.98 | 66.49 | 1217 |
| HSA-MIR-6891-5P | 99.98 | 66.53 | 1372 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-218-5P | 99.93 | 72.22 | 2103 |
| HSA-MIR-548AZ-5P | 99.83 | 69.94 | 3230 |
| HSA-MIR-548T-5P | 99.83 | 69.91 | 3220 |
| HSA-MIR-7157-5P | 99.66 | 69.33 | 1829 |
| HSA-MIR-4310 | 99.59 | 68.84 | 2527 |
| HSA-MIR-3942-3P | 99.57 | 69.03 | 2854 |
| HSA-MIR-136-5P | 99.50 | 67.26 | 1153 |
| HSA-MIR-653-5P | 99.46 | 67.35 | 1300 |
| HSA-MIR-135A-5P | 99.36 | 71.85 | 1601 |
| HSA-MIR-135B-5P | 99.36 | 71.63 | 1613 |
| HSA-MIR-4796-3P | 99.08 | 68.38 | 1681 |
| HSA-MIR-6814-5P | 99.03 | 66.68 | 1273 |
| HSA-MIR-4451 | 98.82 | 68.17 | 1455 |
| HSA-MIR-496 | 98.66 | 69.80 | 931 |
| HSA-MIR-1267 | 98.24 | 69.05 | 837 |
| HSA-MIR-5087 | 98.01 | 69.09 | 965 |
| HSA-MIR-5007-5P | 97.95 | 64.71 | 614 |
| HSA-MIR-4294 | 97.86 | 65.72 | 1110 |
| HSA-MIR-3121-5P | 97.30 | 66.62 | 1146 |
| HSA-MIR-6735-3P | 96.10 | 63.81 | 600 |
| HSA-MIR-5588-3P | 94.96 | 65.59 | 500 |
| HSA-MIR-3174 | 94.63 | 63.64 | 577 |
Literature-anchored findings (GeneRIF, showing 14)
- 5MP1 (BZW2) acts as a partial mimic and competitor of eIF5, interfering with the key steps by which eIF5 regulates eIF2 function. (PMID:21745818)
- overexpression of eIF5 and 5MP induces translation of ATF4 (PMID:27325740)
- These data demonstrated that the knockdown of BZW2 suppresses protein phosphorylation in the Akt/mTOR signaling pathway. These observations suggest that BZW2 is upregulated and has a pro-tumor effect in osteosarcoma via activation of the Akt/mTOR signaling pathway and thus is a potential target for gene therapy. (PMID:28791373)
- Data show that eIF5-mimic protein (5MP) represses non-AUG translation by competing with translation initiation factor 5 (eIF5) for the Met-tRNAi-binding factor eIF2. (PMID:28981728)
- results reveal a surprising role for BZW1 and BZW2 in maintaining homeostatic stringency of start codon selection, and taking into account recent biochemical, genetic and structural insights into eukaryotic initiation, suggest a model for BZW1 and BZW2 function (PMID:29470543)
- BZW2 has an oncogenic role in muscle-invasive bladder cancer and serves as a promising target for molecular diagnosis and gene therapy. (PMID:30932331)
- 5MP1 is a novel oncogene that reprograms c-Myc translation in CRC. 5MP1 could be a potential therapeutic target to overcome therapeutic resistance conferred by tumor heterogeneity of CRC. (PMID:31175057)
- BZW2 promotes the malignant progression of colorectal cancer via activating the ERK/MAPK pathway. (PMID:31643092)
- Human oncoprotein 5MP suppresses general and repeat-associated non-AUG translation via eIF3 by a common mechanism. (PMID:34260931)
- miR-140-3p attenuated the tumorigenesis of multiple myeloma via attenuating BZW2. (PMID:35068373)
- BZW2 Inhibition Reduces Colorectal Cancer Growth and Metastasis. (PMID:37067340)
- m6A methyltransferase METTL3 facilitates multiple myeloma cell growth through the m6A modification of BZW2. (PMID:37222774)
- Interactome Analysis Identifies the Role of BZW2 in Promoting Endoplasmic Reticulum-Mitochondria Contact and Mitochondrial Metabolism. (PMID:38154691)
- The Prognostic and Immune Significance of BZW2 in Pan-Cancer and its Relationship with Proliferation and Apoptosis of Cervical Cancer. (PMID:38538258)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | bzw2 | ENSDARG00000035918 |
| mus_musculus | Bzw2 | ENSMUSG00000020547 |
| rattus_norvegicus | Bzw2 | ENSRNOG00000005096 |
| drosophila_melanogaster | kra | FBGN0250753 |
Paralogs (1): BZW1 (ENSG00000082153)
Protein
Protein identifiers
eIF5-mimic protein 1 — Q9Y6E2 (reviewed: Q9Y6E2)
Alternative names: Basic leucine zipper and W2 domain-containing protein 2
All UniProt accessions (9): Q9Y6E2, B5MCE7, B5MCH7, C9JF98, E7EMS9, E7ETZ4, E9PFE3, F8WDX8, Q75MG1
UniProt curated annotations — full annotation on UniProt →
Function. Translation initiation regulator which represses non-AUG initiated translation and repeat-associated non-AUG (RAN) initiated translation by acting as a competitive inhibitor of eukaryotic translation initiation factor 5 (EIF5) function. Increases the accuracy of translation initiation by impeding EIF5-dependent translation from non-AUG codons by competing with it for interaction with EIF2S2 within the 43S pre-initiation complex (PIC) in an EIF3C-binding dependent manner.
Subunit / interactions. Interacts with EIF3E. Interacts with EIF2S2. Interacts with EIF3C.
Subcellular location. Cytoplasm.
Similarity. Belongs to the BZW family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9Y6E2-1 | 1 | yes |
| Q9Y6E2-2 | 2 |
RefSeq proteins (5): NP_001153239, NP_001349646, NP_001349647, NP_001349648, NP_054757* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003307 | W2_domain | Domain |
| IPR016024 | ARM-type_fold | Homologous_superfamily |
| IPR043510 | W2_5MP1/2 | Domain |
| IPR051245 | eIF5-mimic_regulator | Family |
| IPR057397 | HEAT_5MP1_2 | Domain |
Pfam: PF02020, PF25504
UniProt features (12 total): modified residue 3, mutagenesis site 2, splice variant 2, chain 1, domain 1, sequence conflict 1, region of interest 1, sequence variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9Y6E2-F1 | 91.18 | 0.83 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (3): 117, 412, 414
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 401–411 | reduced interaction with eif2s2. |
| 380–391 | reduced interaction with eif3c. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 271 (showing top):
GSE18804_BRAIN_VS_COLON_TUMORAL_MACROPHAGE_DN, TONKS_TARGETS_OF_RUNX1_RUNX1T1_FUSION_MONOCYTE_UP, RORA1_01, AAGCCAT_MIR135A_MIR135B, GOBP_TRANSLATIONAL_INITIATION, TGACCTY_ERR1_Q2, GOBP_TRANSLATION, GOBP_POST_TRANSCRIPTIONAL_REGULATION_OF_GENE_EXPRESSION, CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_1, LE_EGR2_TARGETS_UP, GROSS_HYPOXIA_VIA_HIF1A_UP, ENGELMANN_CANCER_PROGENITORS_UP, INGRAM_SHH_TARGETS_UP, DODD_NASOPHARYNGEAL_CARCINOMA_UP, BROWN_MYELOID_CELL_DEVELOPMENT_DN
GO Biological Process (2): regulation of translational initiation (GO:0006446), regulation of translation (GO:0006417)
GO Molecular Function (2): cadherin binding (GO:0045296), protein binding (GO:0005515)
GO Cellular Component (2): cytoplasm (GO:0005737), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| translational initiation | 1 |
| regulation of translation | 1 |
| translation | 1 |
| post-transcriptional regulation of gene expression | 1 |
| regulation of protein metabolic process | 1 |
| cell adhesion molecule binding | 1 |
| binding | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
998 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| BZW2 | TSPAN13 | O95857 | 602 |
| BZW2 | ANKMY2 | Q8IV38 | 587 |
| BZW2 | SNX13 | Q9Y5W8 | 560 |
| BZW2 | EIF5 | P55010 | 484 |
| BZW2 | LRRC72 | A6NJI9 | 417 |
| BZW2 | MARK3 | P27448 | 406 |
| BZW2 | EIF1 | P41567 | 375 |
| BZW2 | C2orf15 | Q8WU43 | 357 |
| BZW2 | SMPDL3B | Q92485 | 354 |
| BZW2 | PRR33 | A8MZF0 | 349 |
| BZW2 | IPO11 | Q9UI26 | 345 |
| BZW2 | POLR3G | O15318 | 336 |
| BZW2 | CRPPA | A4D126 | 316 |
| BZW2 | EIF2S2 | P20042 | 313 |
| BZW2 | IMPG2 | Q9BZV3 | 306 |
IntAct
85 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| CD68 | TTI1 | psi-mi:“MI:0914”(association) | 0.640 |
| PMPCB | psi-mi:“MI:0914”(association) | 0.640 | |
| SCN2B | EXOC5 | psi-mi:“MI:0914”(association) | 0.640 |
| BZW2 | ENDOD1 | psi-mi:“MI:0914”(association) | 0.640 |
| BZW2 | MUL1 | psi-mi:“MI:0914”(association) | 0.640 |
| B3GAT3 | GOLIM4 | psi-mi:“MI:0914”(association) | 0.640 |
| BZW2 | BZW1 | psi-mi:“MI:0914”(association) | 0.560 |
| GYPB | TCAF2 | psi-mi:“MI:0914”(association) | 0.530 |
| BZW2 | SLC27A2 | psi-mi:“MI:0914”(association) | 0.530 |
| XPO1 | psi-mi:“MI:0914”(association) | 0.530 | |
| CD68 | TNPO2 | psi-mi:“MI:0914”(association) | 0.530 |
| TMEM43 | ENDOD1 | psi-mi:“MI:0914”(association) | 0.530 |
| sseJ | AGPS | psi-mi:“MI:0914”(association) | 0.460 |
| BZW2 | EIF2S2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| TK2 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| BZW2 | rep | psi-mi:“MI:0915”(physical association) | 0.370 |
| GSK3B | BZW2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| HTT | BZW2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| M | NPEPPSL1 | psi-mi:“MI:0914”(association) | 0.350 |
| HSCB | RBP5 | psi-mi:“MI:0914”(association) | 0.350 |
| ORF4 | DNM1L | psi-mi:“MI:0914”(association) | 0.350 |
| NEK4 | E2F8 | psi-mi:“MI:0914”(association) | 0.350 |
| TNFSF13B | HEATR1 | psi-mi:“MI:0914”(association) | 0.350 |
| STX12 | NBAS | psi-mi:“MI:0914”(association) | 0.350 |
| VIPR2 | C15orf61 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (190): EIF2A (Reconstituted Complex), EIF2B1 (Reconstituted Complex), EIF3A (Reconstituted Complex), GCD11 (Reconstituted Complex), GCD11 (Affinity Capture-Western), SUI2 (Affinity Capture-Western), PRT1 (Affinity Capture-Western), GCD6 (Phenotypic Enhancement), BZW2 (Affinity Capture-Western), BZW2 (Affinity Capture-MS), BZW2 (Affinity Capture-MS), BZW2 (Affinity Capture-MS), BZW2 (Affinity Capture-MS), BZW2 (Affinity Capture-MS), BZW2 (Affinity Capture-MS)
ESM2 similar proteins: A0A3Q1LSX9, A2APV2, A2AT37, A2VD00, A4II09, B0KWH8, B1AZI6, B1MTK1, B2KI97, B3MS75, B3NU52, B4GW22, B4I0W6, B4JM29, B4L2J8, B4NC41, B4Q034, C0H906, C1FXW9, F4IUX6, Q09161, Q16UN6, Q1LUC1, Q1LXC9, Q29G82, Q2L4X1, Q3UYV9, Q4R6R4, Q56A27, Q5R7L4, Q5ZJZ6, Q5ZL42, Q5ZLT7, Q5ZMW3, Q6DDM4, Q6DIE2, Q6GQ80, Q6GQD0, Q6P2Z0, Q6P7P5
Diamond homologs: A3DNI8, C5A2A8, O58312, P38431, P48724, P55010, P55871, P55876, P56329, P59325, Q07205, Q09689, Q1LUC1, Q22918, Q26891, Q2L4X1, Q41969, Q4R6R4, Q54LA1, Q54RF3, Q5R4L0, Q5R7L4, Q5ZL42, Q5ZLT7, Q6P2Z0, Q6P7P5, Q74M98, Q7L1Q6, Q803N9, Q8AVM7, Q8TWR5, Q8U3I5, Q91VK1, Q97W59, Q9C8F1, Q9CQC6, Q9S825, Q9UYR6, Q9VNE2, Q9VXK6
SIGNOR signaling
5 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| BZW2 | up-regulates | AKT | |
| BZW2 | “up-regulates quantity by expression” | ERK1/2 | “transcriptional regulation” |
| BZW2 | “up-regulates activity” | EIF2S1 | binding |
| BZW2 | “up-regulates activity” | EIF3A | binding |
| BZW2 | “up-regulates quantity by expression” | ATF4 | “transcriptional regulation” |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 106 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| translational initiation | 6 | 24.7× | 1e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
63 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 41 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1874 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:16645501:CCGTA:C | donor_loss | 1.0000 |
| 7:16645502:CGTA:C | donor_loss | 1.0000 |
| 7:16645503:GTAC:G | donor_loss | 1.0000 |
| 7:16645504:TA:T | donor_loss | 1.0000 |
| 7:16645505:ACC:A | donor_loss | 1.0000 |
| 7:16645521:T:TA | donor_gain | 1.0000 |
| 7:16665499:GGG:G | donor_gain | 1.0000 |
| 7:16665500:GGG:G | donor_gain | 1.0000 |
| 7:16674406:TTTTA:T | acceptor_loss | 1.0000 |
| 7:16674407:TTTAG:T | acceptor_loss | 1.0000 |
| 7:16674408:TTAGA:T | acceptor_loss | 1.0000 |
| 7:16674409:TA:T | acceptor_loss | 1.0000 |
| 7:16674410:A:AG | acceptor_gain | 1.0000 |
| 7:16674410:AGAT:A | acceptor_gain | 1.0000 |
| 7:16674411:G:GC | acceptor_gain | 1.0000 |
| 7:16674411:GA:G | acceptor_gain | 1.0000 |
| 7:16674411:GAT:G | acceptor_gain | 1.0000 |
| 7:16674411:GATG:G | acceptor_gain | 1.0000 |
| 7:16674411:GATGA:G | acceptor_gain | 1.0000 |
| 7:16674571:T:TA | donor_gain | 1.0000 |
| 7:16674572:G:GA | donor_gain | 1.0000 |
| 7:16674577:G:GT | donor_gain | 1.0000 |
| 7:16674580:G:GG | donor_gain | 1.0000 |
| 7:16674585:CTTG:C | donor_loss | 1.0000 |
| 7:16674587:TGGTA:T | donor_loss | 1.0000 |
| 7:16674588:GGT:G | donor_loss | 1.0000 |
| 7:16674589:G:T | donor_loss | 1.0000 |
| 7:16674590:T:A | donor_loss | 1.0000 |
| 7:16674614:T:TA | donor_gain | 1.0000 |
| 7:16674615:A:AA | donor_gain | 1.0000 |
AlphaMissense
2779 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:16665469:T:A | L9Q | 1.000 |
| 7:16665474:G:C | G11R | 1.000 |
| 7:16665475:G:A | G11D | 1.000 |
| 7:16665486:A:G | K15E | 1.000 |
| 7:16665488:A:C | K15N | 1.000 |
| 7:16665488:A:T | K15N | 1.000 |
| 7:16665492:C:G | R17G | 1.000 |
| 7:16665492:C:T | R17W | 1.000 |
| 7:16665493:G:A | R17Q | 1.000 |
| 7:16665495:A:G | K18E | 1.000 |
| 7:16665496:A:T | K18I | 1.000 |
| 7:16665497:A:C | K18N | 1.000 |
| 7:16665497:A:T | K18N | 1.000 |
| 7:16665499:G:C | R19T | 1.000 |
| 7:16665499:G:T | R19M | 1.000 |
| 7:16665500:G:C | R19S | 1.000 |
| 7:16665500:G:T | R19S | 1.000 |
| 7:16674441:T:C | F30L | 1.000 |
| 7:16674442:T:C | F30S | 1.000 |
| 7:16674443:C:A | F30L | 1.000 |
| 7:16674443:C:G | F30L | 1.000 |
| 7:16674508:T:C | L52P | 1.000 |
| 7:16674520:G:A | G56D | 1.000 |
| 7:16674577:G:A | G75D | 1.000 |
| 7:16674577:G:T | G75V | 1.000 |
| 7:16681307:G:A | G81E | 1.000 |
| 7:16681309:G:A | G82R | 1.000 |
| 7:16681309:G:C | G82R | 1.000 |
| 7:16681310:G:A | G82E | 1.000 |
| 7:16682793:T:C | L118P | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000026781 (7:16644385 A>C), RS1000085091 (7:16684345 T>C), RS1000116058 (7:16704915 G>T), RS1000163335 (7:16645614 T>A,C), RS1000193234 (7:16674180 G>A), RS1000225712 (7:16674004 A>G), RS1000247419 (7:16652881 T>G), RS1000266405 (7:16700531 G>C), RS1000291984 (7:16689128 A>C), RS1000611117 (7:16663984 T>C), RS1000657714 (7:16700097 A>G), RS1000669547 (7:16705486 C>G,T), RS1000669722 (7:16652697 G>C,T), RS1000716720 (7:16705637 A>G), RS1000720389 (7:16658863 A>G)
Disease associations
OMIM: gene MIM:619275 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
29 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001915_18 | Alzheimer’s disease (cognitive decline) | 6.000000e-11 |
| GCST004599_48 | Mean platelet volume | 7.000000e-10 |
| GCST004611_72 | High light scatter reticulocyte count | 5.000000e-26 |
| GCST004611_73 | High light scatter reticulocyte count | 2.000000e-27 |
| GCST004612_31 | High light scatter reticulocyte percentage of red cells | 1.000000e-27 |
| GCST004612_32 | High light scatter reticulocyte percentage of red cells | 5.000000e-29 |
| GCST004619_166 | Reticulocyte fraction of red cells | 1.000000e-27 |
| GCST004619_169 | Reticulocyte fraction of red cells | 8.000000e-26 |
| GCST004622_2 | Reticulocyte count | 9.000000e-24 |
| GCST004622_3 | Reticulocyte count | 2.000000e-25 |
| GCST004628_90 | Immature fraction of reticulocytes | 2.000000e-16 |
| GCST006193_97 | Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test) | 3.000000e-06 |
| GCST006195_86 | Systolic blood pressure x smoking status (current vs non-current) interaction (2df test) | 7.000000e-10 |
| GCST008821_11 | Neurofibrillary tangles | 2.000000e-08 |
| GCST009391_624 | Metabolite levels | 7.000000e-07 |
| GCST90002385_181 | High light scatter reticulocyte count | 3.000000e-25 |
| GCST90002385_182 | High light scatter reticulocyte count | 2.000000e-25 |
| GCST90002386_443 | High light scatter reticulocyte percentage of red cells | 2.000000e-27 |
| GCST90002386_444 | High light scatter reticulocyte percentage of red cells | 6.000000e-27 |
| GCST90002387_376 | Immature fraction of reticulocytes | 1.000000e-11 |
| GCST90002387_377 | Immature fraction of reticulocytes | 9.000000e-17 |
| GCST90002390_239 | Mean corpuscular hemoglobin | 1.000000e-13 |
| GCST90002392_713 | Mean corpuscular volume | 4.000000e-09 |
| GCST90002395_682 | Mean platelet volume | 9.000000e-28 |
| GCST90002404_280 | Red cell distribution width | 6.000000e-16 |
| GCST90002405_221 | Reticulocyte count | 2.000000e-23 |
| GCST90002405_222 | Reticulocyte count | 3.000000e-19 |
| GCST90002406_240 | Reticulocyte fraction of red cells | 6.000000e-26 |
| GCST90002406_241 | Reticulocyte fraction of red cells | 2.000000e-21 |
EFO canonical traits (8, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007986 | reticulocyte count |
| EFO:0006336 | diastolic blood pressure |
| EFO:0006527 | smoking status measurement |
| EFO:0006335 | systolic blood pressure |
| EFO:0006797 | neurofibrillary tangles measurement |
| EFO:0010506 | kynurenic acid measurement |
| EFO:0004527 | mean corpuscular hemoglobin |
| EFO:0009188 | Red cell distribution width |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6066321 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
2 potent at pChembl≥5 of 2 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.78 | Kd | 16.66 | nM | CHEMBL3752910 |
| 7.78 | ED50 | 16.66 | nM | CHEMBL3752910 |
PubChem BioAssay actives
1 with measured affinity, of 2 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2147967: Binding affinity to human BZW2 incubated for 45 mins by Kinobead based pull down assay | kd | 0.0167 | uM |
CTD chemical–gene interactions
41 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Ozone | increases abundance, affects expression, affects cotreatment, increases oxidation | 3 |
| Valproic Acid | affects expression, decreases methylation, increases expression | 3 |
| bisphenol A | decreases expression, increases expression | 2 |
| methacrylaldehyde | increases abundance, affects cotreatment, increases oxidation | 2 |
| Acrolein | affects cotreatment, increases oxidation, increases abundance | 2 |
| Air Pollutants | affects cotreatment, increases abundance, increases oxidation, affects expression | 2 |
| Tretinoin | decreases expression | 2 |
| FR900359 | increases phosphorylation | 1 |
| alpha-pinene | affects cotreatment, increases oxidation, increases abundance | 1 |
| pirinixic acid | affects binding, decreases expression, increases activity | 1 |
| beta-lapachone | increases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| azoxystrobin | increases expression | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| ICG 001 | decreases expression | 1 |
| Grape Seed Proanthocyanidins | affects cotreatment, decreases expression | 1 |
| picoxystrobin | increases expression | 1 |
| Temozolomide | increases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Arsenic Trioxide | decreases expression | 1 |
| Antimycin A | increases expression | 1 |
| Caffeine | increases phosphorylation | 1 |
| Catechin | affects cotreatment, decreases expression | 1 |
| Dichlorodiphenyl Dichloroethylene | increases expression | 1 |
| Diazinon | increases methylation | 1 |
| Doxorubicin | decreases expression | 1 |
| Enzyme Inhibitors | increases O-linked glycosylation, decreases activity | 1 |
| Estradiol | affects cotreatment, decreases expression | 1 |
| Ethyl Methanesulfonate | decreases expression | 1 |
| Ivermectin | decreases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5651009 | Binding | Binding affinity to human BZW2 incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Cellosaurus cell lines
4 cell lines: 4 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_E1SM | HAP1 BZW2 (-) 1 | Cancer cell line | Male |
| CVCL_E1SN | HAP1 BZW2 (-) 2 | Cancer cell line | Male |
| CVCL_E1SP | HAP1 BZW2 (-) 3 | Cancer cell line | Male |
| CVCL_E1SQ | HAP1 BZW2 (-) 4 | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.