C11orf65
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Also known as MGC33948MFI
Summary
C11orf65 (chromosome 11 open reading frame 65, HGNC:28519) is a protein-coding gene on chromosome 11q22.3, encoding Protein MFI (Q8NCR3). Acts as an inhibitor of mitochondrial fission.
Predicted to be involved in negative regulation of mitochondrial fission and negative regulation of protein targeting to mitochondrion. Predicted to be located in cytosol and mitochondrial outer membrane.
Source: NCBI Gene 160140 — RefSeq curated summary.
At a glance
- GWAS associations: 23
- Clinical variants (ClinVar): 1,114 total — 132 pathogenic, 23 likely-pathogenic
- Phenotypes (HPO): 1
- MANE Select transcript:
NM_152587
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:28519 |
| Approved symbol | C11orf65 |
| Name | chromosome 11 open reading frame 65 |
| Location | 11q22.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MGC33948, MFI |
| Ensembl gene | ENSG00000166323 |
| Ensembl biotype | protein_coding |
| Entrez | 160140 |
Gene structure
Transcript identifiers
Ensembl transcripts: 11 — 9 protein_coding, 1 protein_coding_CDS_not_defined, 1 nonsense_mediated_decay
ENST00000393084, ENST00000524755, ENST00000525729, ENST00000526725, ENST00000527531, ENST00000529391, ENST00000533583, ENST00000615746, ENST00000874861, ENST00000874862, ENST00000874863
RefSeq mRNA: 3 — MANE Select: NM_152587
NM_001330368, NM_001351110, NM_152587
CCDS: CCDS81622, CCDS8340
Canonical transcript exons
ENST00000393084 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00003521204 | 108393208 | 108393378 |
| ENSE00003841720 | 108382755 | 108383175 |
| ENSE00003847899 | 108467471 | 108467529 |
| ENSE00003890857 | 108407096 | 108407149 |
| ENSE00003892310 | 108406763 | 108406963 |
| ENSE00003892662 | 108461479 | 108461568 |
| ENSE00003892699 | 108385920 | 108385975 |
| ENSE00003893392 | 108405429 | 108405559 |
| ENSE00003894610 | 108431746 | 108431838 |
Expression profiles
Bgee: expression breadth ubiquitous, 163 present calls, max score 95.45.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 4.7032 / max 81.5612, expressed in 1477 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 122146 | 2.2573 | 1144 |
| 122144 | 1.6010 | 591 |
| 122145 | 0.7268 | 271 |
| 122143 | 0.1182 | 49 |
Top tissues by expression
245 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| sperm | CL:0000019 | 95.45 | gold quality |
| left testis | UBERON:0004533 | 93.49 | gold quality |
| right testis | UBERON:0004534 | 92.91 | gold quality |
| testis | UBERON:0000473 | 91.22 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 88.68 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 88.60 | gold quality |
| adult organism | UBERON:0007023 | 80.12 | gold quality |
| calcaneal tendon | UBERON:0003701 | 73.21 | gold quality |
| islet of Langerhans | UBERON:0000006 | 71.07 | gold quality |
| adrenal tissue | UBERON:0018303 | 70.68 | gold quality |
| colonic epithelium | UBERON:0000397 | 69.29 | gold quality |
| right adrenal gland | UBERON:0001233 | 69.25 | gold quality |
| right uterine tube | UBERON:0001302 | 69.24 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 68.95 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 68.45 | gold quality |
| left adrenal gland | UBERON:0001234 | 68.13 | gold quality |
| monocyte | CL:0000576 | 68.04 | gold quality |
| secondary oocyte | CL:0000655 | 67.32 | silver quality |
| leukocyte | CL:0000738 | 67.30 | gold quality |
| pancreas | UBERON:0001264 | 67.02 | gold quality |
| adrenal gland | UBERON:0002369 | 66.86 | gold quality |
| right lobe of liver | UBERON:0001114 | 66.29 | gold quality |
| body of pancreas | UBERON:0001150 | 66.25 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 65.96 | gold quality |
| spinal cord | UBERON:0002240 | 65.89 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 65.58 | gold quality |
| adrenal cortex | UBERON:0001235 | 64.75 | gold quality |
| vermiform appendix | UBERON:0001154 | 63.39 | gold quality |
| stromal cell of endometrium | CL:0002255 | 62.91 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 62.81 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-134144 | yes | 27.70 |
| E-ANND-3 | no | 4.36 |
Regulation
Is transcription factor: no
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | 4930550C14Rik | ENSMUSG00000005131 |
| rattus_norvegicus | C8h11orf65 | ENSRNOG00000007266 |
Protein
Protein identifiers
Protein MFI — Q8NCR3 (reviewed: Q8NCR3)
Alternative names: Mitochondrial fission factor interactor
All UniProt accessions (3): E9PQ22, Q8NCR3, H0YD27
UniProt curated annotations — full annotation on UniProt →
Function. Acts as an inhibitor of mitochondrial fission. Interacts with MFF and prevents DNM1L recruitment to mitochondria, promoting a more fused mitochondrial network.
Subunit / interactions. Can homodimerize. Interacts with MFF; the interaction inhibits MFF interaction with DNM1L.
Subcellular location. Cytoplasm. Cytosol. Mitochondrion outer membrane.
Tissue specificity. Enriched in the pancreatic beta cell and the testis and is expressed at low levels in other tissues tested.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8NCR3-1 | 1 | yes |
| Q8NCR3-2 | 2 |
RefSeq proteins (3): NP_001317297, NP_001338039, NP_689800* (*=MANE)
Domains & families (InterPro)
UniProt features (3 total): splice variant 2, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8NCR3-F1 | 74.69 | 0.19 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 58 (showing top):
chr11q22, GOBP_PROTEIN_TARGETING, GOBP_ESTABLISHMENT_OF_PROTEIN_LOCALIZATION_TO_ORGANELLE, GOBP_NEGATIVE_REGULATION_OF_CELLULAR_COMPONENT_ORGANIZATION, GOBP_REGULATION_OF_MITOCHONDRION_ORGANIZATION, GOBP_ORGANELLE_FISSION, GOBP_MITOCHONDRIAL_FISSION, GOBP_NEGATIVE_REGULATION_OF_ESTABLISHMENT_OF_PROTEIN_LOCALIZATION, GOBP_REGULATION_OF_MITOCHONDRIAL_FISSION, GOCC_MITOCHONDRIAL_ENVELOPE, GOBP_REGULATION_OF_ESTABLISHMENT_OF_PROTEIN_LOCALIZATION_TO_MITOCHONDRION, GOBP_NEGATIVE_REGULATION_OF_DEVELOPMENTAL_PROCESS, GOBP_PROTEIN_TARGETING_TO_MITOCHONDRION, GOBP_NEGATIVE_REGULATION_OF_ORGANELLE_ORGANIZATION, GOBP_REGULATION_OF_PROTEIN_TARGETING
GO Biological Process (2): negative regulation of mitochondrial fission (GO:0090258), obsolete negative regulation of protein targeting to mitochondrion (GO:1903215)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (5): mitochondrial outer membrane (GO:0005741), cytosol (GO:0005829), cytoplasm (GO:0005737), mitochondrion (GO:0005739), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| cytoplasm | 2 |
| mitochondrial fission | 1 |
| negative regulation of organelle organization | 1 |
| negative regulation of developmental process | 1 |
| regulation of mitochondrial fission | 1 |
| binding | 1 |
| mitochondrial membrane | 1 |
| organelle outer membrane | 1 |
| intracellular anatomical structure | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
242 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| C11orf65 | POGLUT3 | Q7Z4H8 | 615 |
| C11orf65 | NPAT | Q14207 | 493 |
| C11orf65 | CCDC148 | Q8NFR7 | 417 |
| C11orf65 | EXPH5 | Q8NEV8 | 396 |
| C11orf65 | FAM135A | Q9P2D6 | 375 |
| C11orf65 | MTRNR2L10 | P0CJ77 | 368 |
| C11orf65 | ZNF236 | Q9UL36 | 347 |
| C11orf65 | NAA16 | Q6N069 | 347 |
| C11orf65 | METTL27 | Q8N6F8 | 330 |
| C11orf65 | ZBTB22 | O15209 | 322 |
| C11orf65 | CUL5 | Q93034 | 318 |
| C11orf65 | SLF1 | Q9BQI6 | 317 |
| C11orf65 | C1orf35 | Q9BU76 | 310 |
| C11orf65 | KBTBD8 | Q8NFY9 | 310 |
| C11orf65 | SLC47A2 | Q86VL8 | 308 |
IntAct
50 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| HEL-S-72 | MFI | psi-mi:“MI:0915”(physical association) | 0.560 |
| MFI | CALML3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MFI | CALM1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CALM1 | MFI | psi-mi:“MI:0915”(physical association) | 0.560 |
| MFI | psi-mi:“MI:0915”(physical association) | 0.560 | |
| CALML3 | MFI | psi-mi:“MI:0915”(physical association) | 0.560 |
| MFI | psi-mi:“MI:0915”(physical association) | 0.560 | |
| ATOSB | MFI | psi-mi:“MI:0915”(physical association) | 0.560 |
| CALR | MFI | psi-mi:“MI:0915”(physical association) | 0.560 |
| MFI | CDH1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MFI | DLST | psi-mi:“MI:0915”(physical association) | 0.560 |
| CDK5R1 | MFI | psi-mi:“MI:0915”(physical association) | 0.560 |
| MFI | AHCYL1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MFI | NEK7 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (20): C11orf65 (Two-hybrid), C11orf65 (Two-hybrid), C11orf65 (Two-hybrid), C11orf65 (Two-hybrid), UBE2T (Affinity Capture-MS), LASP1 (Affinity Capture-MS), C11orf65 (Two-hybrid), UBE2T (Affinity Capture-MS), LASP1 (Affinity Capture-MS), C11orf65 (Reconstituted Complex), C11orf65 (Two-hybrid), C11orf65 (Two-hybrid), C11orf65 (Two-hybrid), CALM1 (Two-hybrid), CCDC47 (Proximity Label-MS)
ESM2 similar proteins: A0A1B0GVH7, A0A4X1TZW7, A0A5F8MPE6, E1B836, E1C760, E7EXT2, F7AEX0, O74370, O95391, P21374, P51950, Q20716, Q24276, Q24740, Q28E45, Q2F5J3, Q2KI00, Q3B820, Q3KQD1, Q3TGF2, Q3ZBE5, Q45GW3, Q4R4P2, Q502W7, Q569B9, Q5EAW4, Q5RHY1, Q5U4F3, Q5XI37, Q5XIN9, Q5ZIG2, Q69ZQ2, Q6SP97, Q7L590, Q80ZG5, Q8BHJ9, Q8BRC6, Q8CDN8, Q8NCR3, Q8TC29
Diamond homologs: Q569B9, Q8NCR3, Q9D4W2
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
1114 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 132 |
| Likely pathogenic | 23 |
| Uncertain significance | 496 |
| Likely benign | 169 |
| Benign | 18 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1068581 | NM_000051.4(ATM):c.7679dup (p.Leu2561fs) | Pathogenic |
| 1069988 | NM_000051.4(ATM):c.7113T>G (p.Tyr2371Ter) | Pathogenic |
| 1070130 | NM_000051.4(ATM):c.6661G>T (p.Glu2221Ter) | Pathogenic |
| 1070471 | NM_000051.4(ATM):c.8182dup (p.Met2728fs) | Pathogenic |
| 1072260 | NM_000051.4(ATM):c.7760_7761insCAATAACTAAAAATGT (p.Val2587_Pro2588insAsnAsnTer) | Pathogenic |
| 1072795 | NM_000051.4(ATM):c.8663del (p.Ile2888fs) | Pathogenic |
| 1075138 | NM_000051.4(ATM):c.6024del (p.Tyr2009fs) | Pathogenic |
| 1075306 | NM_000051.4(ATM):c.6388_6392del (p.Asn2130fs) | Pathogenic |
| 1076423 | NM_000051.4(ATM):c.8110dup (p.Cys2704fs) | Pathogenic |
| 1163050 | NM_000051.4(ATM):c.6452+1G>C | Pathogenic |
| 1176293 | NM_000051.4(ATM):c.6298del (p.Tyr2100fs) | Pathogenic |
| 1184926 | NM_000051.4(ATM):c.8695del (p.Ile2899fs) | Pathogenic |
| 127447 | NM_000051.4(ATM):c.7630-2A>C | Pathogenic |
| 127453 | NM_000051.4(ATM):c.7998dup (p.Met2667fs) | Pathogenic |
| 1331872 | NM_000051.4(ATM):c.7282_7283insAA (p.Arg2428fs) | Pathogenic |
| 1331958 | NM_000051.4(ATM):c.8592C>G (p.Tyr2864Ter) | Pathogenic |
| 1332009 | NM_000051.4(ATM):c.6187G>T (p.Gly2063Ter) | Pathogenic |
| 1354222 | NM_000051.4(ATM):c.8686C>T (p.Gln2896Ter) | Pathogenic |
| 135775 | NM_000051.4(ATM):c.6807G>A (p.Gln2269=) | Pathogenic |
| 1359901 | NM_000051.4(ATM):c.6606_6609del (p.Val2201_Tyr2202insTer) | Pathogenic |
| 1364211 | NM_000051.4(ATM):c.7142dup (p.Asn2381fs) | Pathogenic |
| 1383209 | NM_000051.4(ATM):c.7311_7314del (p.Arg2436_Tyr2437insTer) | Pathogenic |
| 1401082 | NM_000051.4(ATM):c.6198+1del | Pathogenic |
| 141766 | NM_000051.4(ATM):c.7951C>T (p.Gln2651Ter) | Pathogenic |
| 1421780 | NM_000051.4(ATM):c.7915A>T (p.Lys2639Ter) | Pathogenic |
| 142531 | NM_000051.4(ATM):c.8206_8207dup (p.Asn2736fs) | Pathogenic |
| 142570 | NM_000051.4(ATM):c.6403_6404insCT (p.Leu2135fs) | Pathogenic |
| 1431470 | NM_000051.4(ATM):c.8516dup (p.Asp2841fs) | Pathogenic |
| 1433261 | NM_000051.4(ATM):c.5799G>A (p.Trp1933Ter) | Pathogenic |
| 1460103 | NM_000051.4(ATM):c.8504dup (p.Cys2835fs) | Pathogenic |
SpliceAI
5752 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:108310158:A:AG | acceptor_gain | 1.0000 |
| 11:108310159:G:GG | acceptor_gain | 1.0000 |
| 11:108310159:GA:G | acceptor_gain | 1.0000 |
| 11:108310159:GAC:G | acceptor_gain | 1.0000 |
| 11:108310311:AAAAG:A | donor_loss | 1.0000 |
| 11:108310312:AAAGG:A | donor_loss | 1.0000 |
| 11:108310313:AAGGT:A | donor_loss | 1.0000 |
| 11:108310314:AGG:A | donor_loss | 1.0000 |
| 11:108310316:G:GC | donor_loss | 1.0000 |
| 11:108310317:T:G | donor_loss | 1.0000 |
| 11:108316005:TTATA:T | acceptor_loss | 1.0000 |
| 11:108316006:TATAG:T | acceptor_loss | 1.0000 |
| 11:108316007:ATAGA:A | acceptor_loss | 1.0000 |
| 11:108316008:TA:T | acceptor_loss | 1.0000 |
| 11:108316009:A:AG | acceptor_gain | 1.0000 |
| 11:108316009:A:G | acceptor_loss | 1.0000 |
| 11:108316010:G:GA | acceptor_gain | 1.0000 |
| 11:108316010:GACT:G | acceptor_gain | 1.0000 |
| 11:108316100:C:T | donor_gain | 1.0000 |
| 11:108317517:GTCAG:G | donor_gain | 1.0000 |
| 11:108317521:GGTA:G | donor_loss | 1.0000 |
| 11:108317522:G:GG | donor_gain | 1.0000 |
| 11:108317522:GTAAG:G | donor_loss | 1.0000 |
| 11:108319939:T:TA | acceptor_gain | 1.0000 |
| 11:108319952:A:AG | acceptor_gain | 1.0000 |
| 11:108319953:G:GA | acceptor_gain | 1.0000 |
| 11:108319953:GC:G | acceptor_gain | 1.0000 |
| 11:108319953:GCAAA:G | acceptor_gain | 1.0000 |
| 11:108320040:A:T | donor_gain | 1.0000 |
| 11:108321300:GA:G | acceptor_gain | 1.0000 |
AlphaMissense
2097 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:108406783:A:G | W137R | 0.998 |
| 11:108406783:A:T | W137R | 0.998 |
| 11:108393233:A:G | W236R | 0.995 |
| 11:108393233:A:T | W236R | 0.995 |
| 11:108406781:C:A | W137C | 0.994 |
| 11:108406781:C:G | W137C | 0.994 |
| 11:108407109:A:G | F72S | 0.993 |
| 11:108385942:G:C | S255R | 0.991 |
| 11:108385942:G:T | S255R | 0.991 |
| 11:108385944:T:G | S255R | 0.991 |
| 11:108393257:A:G | W228R | 0.991 |
| 11:108393257:A:T | W228R | 0.991 |
| 11:108406801:G:T | R131S | 0.991 |
| 11:108405442:A:G | W183R | 0.990 |
| 11:108405442:A:T | W183R | 0.990 |
| 11:108406892:G:C | S100R | 0.990 |
| 11:108406892:G:T | S100R | 0.990 |
| 11:108406894:T:G | S100R | 0.990 |
| 11:108393231:C:A | W236C | 0.989 |
| 11:108393231:C:G | W236C | 0.989 |
| 11:108406928:A:C | F88L | 0.989 |
| 11:108406928:A:T | F88L | 0.989 |
| 11:108406930:A:G | F88L | 0.989 |
| 11:108406934:C:A | K86N | 0.989 |
| 11:108406934:C:G | K86N | 0.989 |
| 11:108407112:C:G | R71P | 0.989 |
| 11:108385962:A:G | W249R | 0.988 |
| 11:108385962:A:T | W249R | 0.988 |
| 11:108406778:C:A | R138S | 0.988 |
| 11:108406778:C:G | R138S | 0.988 |
dbSNP variants (sampled 300 via entrez): RS1000002831 (11:108379369 T>C), RS1000007177 (11:108309111 G>A), RS1000008047 (11:108419040 A>G), RS1000032847 (11:108316037 T>A,C), RS1000085382 (11:108432759 T>C), RS1000098120 (11:108360262 T>C), RS1000110836 (11:108406464 C>G,T), RS1000122000 (11:108399751 A>C), RS1000124162 (11:108454352 G>A), RS1000129752 (11:108339269 G>A), RS1000188035 (11:108310000 A>G), RS1000220936 (11:108313457 C>A), RS1000228433 (11:108344001 A>C,G), RS1000241214 (11:108336980 C>T), RS1000244798 (11:108320395 A>C,G)
Disease associations
OMIM: gene `` | disease phenotypes: MIM:208900, MIM:114480, MIM:114500, MIM:167000, MIM:109800, MIM:613659, MIM:604370
GenCC curated gene-disease
Mondo (17): ataxia telangiectasia (MONDO:0008840), hereditary neoplastic syndrome (MONDO:0015356), hereditary breast carcinoma (MONDO:0016419), hereditary breast ovarian cancer syndrome (MONDO:0003582), familial colorectal cancer type X (MONDO:0018604), colorectal cancer (MONDO:0005575), ovarian cancer (MONDO:0008170), ATM-related cancer predisposition (MONDO:0700270), breast cancer (MONDO:0007254), urinary bladder cancer (MONDO:0001187), colon carcinoma (MONDO:0002032), thyroid gland papillary carcinoma (MONDO:0005075), gastric cancer (MONDO:0001056), childhood neoplasm (MONDO:0021079), breast-ovarian cancer, familial, susceptibility to, 1 (MONDO:0011450)
Orphanet (10): Ataxia-telangiectasia (Orphanet:100), Inherited cancer-predisposing syndrome (Orphanet:140162), Hereditary breast cancer (Orphanet:227535), Hereditary breast and/or ovarian cancer syndrome (Orphanet:145), Familial colorectal cancer Type X (Orphanet:440437), Rare ovarian cancer (Orphanet:213500), Differentiated thyroid carcinoma (Orphanet:146), NON RARE IN EUROPE: Colorectal cancer (Orphanet:466667), NON RARE IN EUROPE: Bladder cancer (Orphanet:157980), OBSOLETE: Familial ovarian cancer (Orphanet:213517)
HPO phenotypes
1 total (1 of 1 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0002895 | Papillary thyroid carcinoma |
GWAS associations
23 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004603_63 | Platelet count | 1.000000e-15 |
| GCST004610_120 | White blood cell count | 2.000000e-10 |
| GCST004613_25 | Sum neutrophil eosinophil counts | 1.000000e-10 |
| GCST004614_1 | Granulocyte count | 1.000000e-10 |
| GCST004620_123 | Sum basophil neutrophil counts | 2.000000e-09 |
| GCST004626_85 | Myeloid white cell count | 1.000000e-10 |
| GCST004629_96 | Neutrophil count | 2.000000e-09 |
| GCST004630_179 | Mean corpuscular hemoglobin | 1.000000e-16 |
| GCST005993_54 | Mean corpuscular hemoglobin | 1.000000e-11 |
| GCST006011_84 | Mean corpuscular volume | 3.000000e-14 |
| GCST006462_38 | Uterine fibroids | 3.000000e-12 |
| GCST007250_11 | Nonunion in individuals with fractures | 3.000000e-07 |
| GCST009066_40 | Mosaic loss of chromosome Y (Y chromosome dosage) | 6.000000e-26 |
| GCST009067_31 | Mosaic loss of chromosome Y (Y chromosome dosage) | 9.000000e-31 |
| GCST009158_30 | Uterine fibroids | 1.000000e-27 |
| GCST90002388_545 | Lymphocyte count | 6.000000e-10 |
| GCST90002392_358 | Mean corpuscular volume | 3.000000e-41 |
| GCST90002394_472 | Monocyte percentage of white cells | 6.000000e-13 |
| GCST90002395_98 | Mean platelet volume | 2.000000e-10 |
| GCST90002398_200 | Neutrophil count | 1.000000e-15 |
| GCST90002401_193 | Platelet distribution width | 2.000000e-12 |
| GCST90002403_206 | Red blood cell count | 7.000000e-25 |
| GCST90002407_336 | White blood cell count | 3.000000e-16 |
EFO canonical traits (12, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004309 | platelet count |
| EFO:0004833 | neutrophil count |
| EFO:0004842 | eosinophil count |
| EFO:0007987 | granulocyte count |
| EFO:0005090 | basophil count |
| EFO:0004527 | mean corpuscular hemoglobin |
| EFO:0009707 | fractures, ununited |
| EFO:0007783 | mosaic loss of chromosome Y measurement |
| EFO:0004587 | lymphocyte count |
| EFO:0007989 | monocyte percentage of leukocytes |
| EFO:0007984 | platelet component distribution width |
| EFO:0004305 | erythrocyte count |
MeSH disease descriptors (5)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D001260 | Ataxia Telangiectasia | C10.228.140.252.190.530.060; C10.562.100; C10.597.350.090.500.530.060; C14.907.823.213; C16.320.080; C16.320.798.250; C18.452.284.060; C20.673.795.250 |
| D061325 | Hereditary Breast and Ovarian Cancer Syndrome | C04.588.180.483; C04.588.322.455.431; C04.700.517; C12.050.351.500.056.630.705.431; C12.050.351.937.418.685.431; C12.100.250.056.630.705.431; C12.900.418.685.431; C16.320.700.517; C17.800.090.500.483; C19.344.410.431; C19.391.630.705.431 |
| D009386 | Neoplastic Syndromes, Hereditary | C04.700; C16.320.700 |
| D010051 | Ovarian Neoplasms | C04.588.322.455; C12.050.351.500.056.630.705; C12.050.351.937.418.685; C12.100.250.056.630.705; C12.900.418.685; C19.344.410; C19.391.630.705 |
| C562840 | Breast Cancer, Familial (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
1 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs11212617 | Efficacy | 4 | metformin | Diabetes Mellitus;Type 2 |
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs11212617 | ATM, C11orf65 | 4 | -2.00 | 1 | metformin |
CTD chemical–gene interactions
9 total (human), top 9 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| methyleugenol | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| (+)-JQ1 compound | increases expression | 1 |
| Leflunomide | decreases expression | 1 |
| Cadmium | decreases expression, increases abundance | 1 |
| N-Nitrosopyrrolidine | decreases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Cadmium Chloride | increases abundance, decreases expression | 1 |
| Okadaic Acid | decreases expression | 1 |
Clinical trials (associated diseases)
119 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01052623 | PHASE4 | UNKNOWN | Status of Growth Hormone/ Insulin-like Growth Factor-1 (GH/IGF-1) Axis and Growth Failure in Ataxia Telangiectasia (AT) |
| NCT02733679 | PHASE4 | COMPLETED | Response of Individuals With Ataxia-Telangiectasia to Metformin and Pioglitazone |
| NCT02562170 | PHASE4 | COMPLETED | Protexa® Versus TiLoopBra® in Immediate Breast Reconstruction- A Pilot Study |
| NCT00656409 | PHASE3 | COMPLETED | Conjugate Pneumococcal Vaccine in Ataxia Telangiectasia (AT) |
| NCT03563053 | PHASE3 | TERMINATED | Extension Treatment Using EryDex System in Patients With AT Who Participated in the ATTeST-IEDAT-02-2015 Study |
| NCT06193200 | PHASE3 | COMPLETED | Evaluate the Neurological Effects of EryDex on Subjects With A-T |
| NCT06664853 | PHASE3 | TERMINATED | Open-Label Extension of EryDex Study IEDAT-04-2022 |
| NCT06673056 | PHASE3 | ACTIVE_NOT_RECRUITING | A Pivotal Study of N-Acetyl-L-Leucine on Ataxia-Telangiectasia (A-T) |
| NCT00673335 | PHASE3 | COMPLETED | Letrozole in Preventing Breast Cancer in Postmenopausal Women With a BRCA1 or BRCA2 Mutation |
| NCT00685256 | PHASE3 | COMPLETED | Standard Genetic Counseling With or Without a Decision Guide in Improving Communication Between Mothers Undergoing BRCA1/2 Testing and Their Minor-Age Children |
| NCT03162276 | PHASE3 | UNKNOWN | Trial of Inquiry Based Stress Reduction (IBSR) Program for BRCA1/2 Mutation Carriers |
| NCT03759678 | PHASE2 | TERMINATED | N-Acetyl-L-Leucine for Ataxia-Telangiectasia (A-T) |
| NCT03962114 | PHASE2 | COMPLETED | Effects of Vitamin B3 in Patients With Ataxia Telangiectasia |
| NCT04513002 | PHASE2 | COMPLETED | Ataxia-telangiectasia: Treating Mitochondrial Dysfunction With a Novel Form of Anaplerosis |
| NCT04870866 | PHASE2 | ACTIVE_NOT_RECRUITING | NAD Supplementation to Prevent Progressive Neurological Disease in Ataxia Telangiectasia |
| NCT04887311 | PHASE2 | UNKNOWN | MBM-01 (Tempol) for the Treatment of Ataxia Telangiectasia |
| NCT00253539 | PHASE2 | COMPLETED | Arzoxifene or Tamoxifen in Preventing Breast Cancer in Premenopausal Women at High Risk for Breast Cancer |
| NCT00305695 | PHASE2 | COMPLETED | Zoledronate or Observation in Maintaining Bone Mineral Density in Patients Who Are Undergoing Surgery to Remove Both Ovaries |
| NCT00321633 | PHASE2 | COMPLETED | Carboplatin or Docetaxel in Treating Women With Metastatic Genetic Breast Cancer |
| NCT01333748 | PHASE2 | COMPLETED | Search Allelic Imbalance of Expression of BRCA Genes in Hereditary Risk of Breast and/or Ovarian Cancer |
| NCT01367639 | PHASE2 | COMPLETED | Trial of Inquiry Based Stress Reduction (IBSR) Program for BRCA1/2 Mutation Carriers |
| NCT05531890 | PHASE1 | UNKNOWN | Comparative Bioavailability of Betamethasone Oral Solution Metered Spray (GTX-102) in Healthy Subjects |
| NCT00535119 | PHASE1 | COMPLETED | Veliparib, Carboplatin, and Paclitaxel in Treating Patients With Advanced Solid Cancer |
| NCT00892736 | PHASE1 | COMPLETED | Veliparib in Treating Patients With Malignant Solid Tumors That Do Not Respond to Previous Therapy |
| NCT07215416 | PHASE1/PHASE2 | RECRUITING | Safety and Efficacy of Mutation-targeted Precision Genetic Therapy for Ataxia-Telangiectasia (A-T) |
| NCT00640003 | EARLY_PHASE1 | COMPLETED | Baclofen Treatment of Ataxia Telangiectasia |
| NCT00187057 | Not specified | COMPLETED | Study for Treatment of Cancer in Children With Ataxia-telangiectasia |
| NCT00951886 | Not specified | UNKNOWN | The Validity of Forced Expiratory Maneuvers in Ataxia Telangiectasia Studied Longitudinally |
| NCT01075438 | Not specified | UNKNOWN | Immunogenicity of Pneumococcal Vaccines in Ataxia-telangiectasia Patients |
| NCT01793168 | Not specified | RECRUITING | Rare Disease Patient Registry & Natural History Study - Coordination of Rare Diseases at Sanford |
| NCT01942850 | Not specified | COMPLETED | International Ataxia Rating Scale in Younger Patients |
| NCT02285348 | Not specified | COMPLETED | Oxidative Stress, Low Grade Inflammation, Tissue Breakdown and Biomarkers in Cerebrospinal Fluid of A-T |
| NCT02309632 | Not specified | WITHDRAWN | Pancreatic Cancer Screening of High-Risk Individuals in Arkansas |
| NCT02345135 | Not specified | COMPLETED | Susceptibility to Infections in Ataxia Telangiectasia |
| NCT02345200 | Not specified | COMPLETED | Body Composition and Hormonal Status in Ataxia Telangiectasia |
| NCT03357978 | Not specified | UNKNOWN | Susceptibility to Infections, Tumor Risk and Liver Disease in Patients With Ataxia Telangiectasia |
| NCT04037189 | Not specified | UNKNOWN | Treatment of Leukemia and Lymphoma in Children With Ataxia Telangiectasia |
| NCT04605523 | Not specified | UNKNOWN | Neurofilament Light- Chain in Ataxia Telangiectasia |
| NCT04991701 | Not specified | UNKNOWN | A National Retrospective Population Based Cohort Study of the Natural History of Ataxia Telangiectasia |
| NCT05252819 | Not specified | COMPLETED | Whole Body MRI for Cancer Surveillance in A-T |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): ataxia telangiectasia, ATM-related cancer predisposition, breast-ovarian cancer, familial, susceptibility to, 1, childhood neoplasm, colon carcinoma, familial colorectal cancer type X, familial ovarian cancer, gastric cancer, hereditary breast carcinoma, hereditary breast ovarian cancer syndrome, ovarian cancer, polyp of large intestine, thyroid gland papillary carcinoma, urinary bladder cancer, uterine corpus leiomyoma