C12orf42-AS1

Summary

C12orf42-AS1 (C12orf42 antisense RNA 1, HGNC:56185) is a long non-coding RNA gene on chromosome 12q23.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56185
Approved symbol	C12orf42-AS1
Name	C12orf42 antisense RNA 1
Location	12q23.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000257860
Ensembl biotype	lncRNA
Entrez	101929058
RNAcentral	URS00007E4EF8 — lncRNA, 927 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 14 lncRNA

ENST00000547418, ENST00000549568, ENST00000550664, ENST00000552759, ENST00000652849, ENST00000658970, ENST00000660400, ENST00000669766, ENST00000820908, ENST00000820909, ENST00000820910, ENST00000820911, ENST00000820912, ENST00000820913

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000547418 — 7 exons

Exon	Start	End
ENSE00002326045	103156099	103156208
ENSE00002368969	103164691	103164763
ENSE00002380768	103159459	103159583
ENSE00002409805	103162716	103162950
ENSE00002414561	103168038	103168234
ENSE00002420734	103151842	103151918
ENSE00003756244	103164403	103164437

Expression profiles

Bgee: expression breadth broad, 62 present calls, max score 80.07.

Top tissues by expression

68 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	80.07	gold quality
testis	UBERON:0000473	79.45	gold quality
right testis	UBERON:0004534	78.00	gold quality
cerebellar vermis	UBERON:0004720	72.17	gold quality
quadriceps femoris	UBERON:0001377	70.66	gold quality
bone marrow	UBERON:0002371	66.82	silver quality
thymus	UBERON:0002370	64.23	silver quality
multicellular organism	UBERON:0000468	61.67	gold quality
kidney	UBERON:0002113	61.31	silver quality
skeletal muscle tissue	UBERON:0001134	61.19	silver quality
monocyte	CL:0000576	61.14	gold quality
prefrontal cortex	UBERON:0000451	57.06	gold quality
blood	UBERON:0000178	55.03	gold quality
fundus of stomach	UBERON:0001160	54.91	gold quality
left adrenal gland cortex	UBERON:0035825	54.44	gold quality
lung	UBERON:0002048	54.07	gold quality
left adrenal gland	UBERON:0001234	52.04	gold quality
gastrocnemius	UBERON:0001388	52.02	gold quality
prostate gland	UBERON:0002367	51.37	gold quality
tonsil	UBERON:0002372	49.95	gold quality
thoracic mammary gland	UBERON:0005200	49.94	gold quality
right atrium auricular region	UBERON:0006631	48.74	gold quality
right lobe of liver	UBERON:0001114	48.71	silver quality
heart left ventricle	UBERON:0002084	48.59	gold quality
left lobe of thyroid gland	UBERON:0001120	47.52	gold quality
Brodmann (1909) area 9	UBERON:0013540	47.45	gold quality
right ovary	UBERON:0002118	46.71	gold quality
heart	UBERON:0000948	46.24	gold quality
thoracic aorta	UBERON:0001515	46.16	gold quality
small intestine	UBERON:0002108	46.13	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.59

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.