C12orf43
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Also known as FLJ12448Custos
Summary
C12orf43 (chromosome 12 open reading frame 43, HGNC:25719) is a protein-coding gene on chromosome 12q24.31, encoding Protein CUSTOS (Q96C57). Plays a role in the regulation of Wnt signaling pathway during early development.
Predicted to be involved in Spemann organizer formation and negative regulation of Wnt signaling pathway. Predicted to be located in nuclear envelope.
Source: NCBI Gene 64897 — RefSeq curated summary.
At a glance
- GWAS associations: 16
- Clinical variants (ClinVar): 91 total — 2 pathogenic, 7 likely-pathogenic
- Phenotypes (HPO): 1
- MANE Select transcript:
NM_022895
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:25719 |
| Approved symbol | C12orf43 |
| Name | chromosome 12 open reading frame 43 |
| Location | 12q24.31 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ12448, Custos |
| Ensembl gene | ENSG00000157895 |
| Ensembl biotype | protein_coding |
| Entrez | 64897 |
Gene structure
Transcript identifiers
Ensembl transcripts: 13 — 10 protein_coding, 2 retained_intron, 1 nonsense_mediated_decay
ENST00000288757, ENST00000445832, ENST00000502891, ENST00000508193, ENST00000535367, ENST00000537817, ENST00000538296, ENST00000539736, ENST00000546272, ENST00000886555, ENST00000886556, ENST00000886557, ENST00000886558
RefSeq mRNA: 7 — MANE Select: NM_022895
NM_001286191, NM_001286192, NM_001286195, NM_001286196, NM_001286197, NM_001286198, NM_022895
CCDS: CCDS66486, CCDS66487, CCDS76613, CCDS9210
Canonical transcript exons
ENST00000288757 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001191399 | 121000486 | 121004489 |
| ENSE00003477665 | 121011104 | 121011146 |
| ENSE00003480821 | 121016330 | 121016487 |
| ENSE00003525440 | 121006321 | 121006394 |
| ENSE00003548666 | 121010828 | 121010926 |
| ENSE00003569609 | 121005003 | 121005093 |
Expression profiles
Bgee: expression breadth ubiquitous, 266 present calls, max score 90.61.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 9.6362 / max 71.7681, expressed in 1788 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 133687 | 9.6362 | 1788 |
Top tissues by expression
285 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| secondary oocyte | CL:0000655 | 90.61 | gold quality |
| oocyte | CL:0000023 | 88.86 | gold quality |
| prefrontal cortex | UBERON:0000451 | 86.35 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 84.15 | gold quality |
| frontal cortex | UBERON:0001870 | 83.93 | gold quality |
| right frontal lobe | UBERON:0002810 | 83.91 | gold quality |
| neocortex | UBERON:0001950 | 83.63 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 83.58 | gold quality |
| sural nerve | UBERON:0015488 | 83.48 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 83.42 | gold quality |
| cortical plate | UBERON:0005343 | 83.38 | gold quality |
| cingulate cortex | UBERON:0003027 | 83.29 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 83.03 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 82.15 | gold quality |
| granulocyte | CL:0000094 | 81.99 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 81.94 | gold quality |
| monocyte | CL:0000576 | 81.75 | gold quality |
| cerebral cortex | UBERON:0000956 | 81.73 | gold quality |
| leukocyte | CL:0000738 | 81.54 | gold quality |
| popliteal artery | UBERON:0002250 | 81.48 | gold quality |
| tibial artery | UBERON:0007610 | 81.48 | gold quality |
| mononuclear cell | CL:0000842 | 81.45 | gold quality |
| mucosa of stomach | UBERON:0001199 | 81.31 | gold quality |
| ventricular zone | UBERON:0003053 | 81.22 | gold quality |
| aorta | UBERON:0000947 | 80.64 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 80.63 | gold quality |
| lower esophagus | UBERON:0013473 | 80.59 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 80.57 | gold quality |
| ganglionic eminence | UBERON:0004023 | 80.55 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 80.50 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 4.56 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
47 targeting C12orf43, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6758-5P | 100.00 | 66.21 | 1470 |
| HSA-MIR-6851-5P | 100.00 | 65.63 | 1294 |
| HSA-MIR-3689D | 100.00 | 66.14 | 1181 |
| HSA-MIR-12118 | 100.00 | 65.88 | 1270 |
| HSA-MIR-6721-5P | 99.93 | 68.92 | 2981 |
| HSA-MIR-627-3P | 99.90 | 71.42 | 3316 |
| HSA-MIR-7110-5P | 99.80 | 67.84 | 1712 |
| HSA-MIR-6842-5P | 99.80 | 67.54 | 1587 |
| HSA-MIR-1299 | 99.77 | 71.24 | 2389 |
| HSA-MIR-92A-2-5P | 99.75 | 67.01 | 2164 |
| HSA-MIR-4719 | 99.73 | 72.10 | 3329 |
| HSA-MIR-4428 | 99.73 | 66.41 | 1733 |
| HSA-MIR-4306 | 99.72 | 70.50 | 3630 |
| HSA-MIR-1200 | 99.71 | 70.42 | 1838 |
| HSA-MIR-587 | 99.64 | 70.86 | 2611 |
| HSA-MIR-6134 | 99.63 | 65.68 | 1537 |
| HSA-MIR-6752-5P | 99.59 | 67.32 | 1243 |
| HSA-MIR-6832-5P | 99.58 | 64.82 | 1132 |
| HSA-MIR-372-5P | 99.41 | 69.11 | 2299 |
| HSA-MIR-4644 | 99.35 | 69.12 | 2514 |
| HSA-MIR-185-5P | 99.35 | 68.60 | 2497 |
| HSA-MIR-1273H-3P | 99.29 | 67.55 | 980 |
| HSA-MIR-6878-3P | 99.24 | 64.23 | 920 |
| HSA-MIR-6744-3P | 99.22 | 64.41 | 972 |
| HSA-MIR-544B | 99.18 | 67.41 | 1632 |
| HSA-MIR-4757-5P | 99.12 | 64.51 | 981 |
| HSA-MIR-7151-3P | 99.04 | 69.72 | 2370 |
| HSA-MIR-6074 | 98.89 | 69.64 | 2187 |
| HSA-MIR-382-3P | 98.83 | 67.10 | 1074 |
| HSA-MIR-3194-3P | 98.83 | 66.22 | 1167 |
Literature-anchored findings (GeneRIF, showing 2)
- Study provides evidence that C12orf43/rs2258287 was associated with the risk of coronary artery disease in the studied Pakistani cohort. (PMID:27263109)
- Association of a single-nucleotide polymorphism in C12orf43 region with the risk of coronary artery disease. (PMID:38430045)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | zgc:162025 | ENSDARG00000046141 |
| mus_musculus | 2210016L21Rik | ENSMUSG00000029559 |
| rattus_norvegicus | C12h12orf43 | ENSRNOG00000001185 |
Protein
Protein identifiers
Protein CUSTOS — Q96C57 (reviewed: Q96C57)
All UniProt accessions (7): E7ENF1, Q96C57, F5H3K2, F5H7W8, F5H8B7, G5EA44, H0YGK4
UniProt curated annotations — full annotation on UniProt →
Function. Plays a role in the regulation of Wnt signaling pathway during early development.
Subcellular location. Nucleus envelope.
Similarity. Belongs to the CUSTOS family.
RefSeq proteins (7): NP_001273120, NP_001273121, NP_001273124, NP_001273125, NP_001273126, NP_001273127, NP_075046* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR026694 | CUSTOS | Family |
Pfam: PF23999
UniProt features (17 total): modified residue 5, compositionally biased region 5, region of interest 2, sequence conflict 2, chain 1, sequence variant 1, short sequence motif 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96C57-F1 | 64.08 | 0.07 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (5): 79, 138, 182, 211, 61
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 73 (showing top):
GOBP_DEVELOPMENTAL_INDUCTION, GOBP_REGULATION_OF_WNT_SIGNALING_PATHWAY, TIEN_INTESTINE_PROBIOTICS_24HR_UP, GOBP_NEGATIVE_REGULATION_OF_WNT_SIGNALING_PATHWAY, GOCC_NUCLEAR_ENVELOPE, GOCC_NUCLEOLUS, chr12q24, GOCC_ORGANELLE_ENVELOPE, MODULE_358, TBK1.DF_DN, CIITA_TARGET_GENES, DIDO1_TARGET_GENES, E2F2_TARGET_GENES, GLI4_TARGET_GENES, OVOL3_TARGET_GENES
GO Biological Process (3): Wnt signaling pathway (GO:0016055), negative regulation of Wnt signaling pathway (GO:0030178), Spemann organizer formation (GO:0060061)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (2): nuclear envelope (GO:0005635), nucleus (GO:0005634)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cell surface receptor signaling pathway | 1 |
| negative regulation of signal transduction | 1 |
| Wnt signaling pathway | 1 |
| regulation of Wnt signaling pathway | 1 |
| developmental induction | 1 |
| anatomical structure formation involved in morphogenesis | 1 |
| binding | 1 |
| nucleus | 1 |
| endomembrane system | 1 |
| organelle envelope | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
504 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| C12orf43 | FAM78B | Q5VT40 | 550 |
| C12orf43 | ANKRD13A | Q8IZ07 | 532 |
| C12orf43 | GPHA2 | Q96T91 | 479 |
| C12orf43 | OAZ1 | P54368 | 449 |
| C12orf43 | MMAB | Q96EY8 | 446 |
| C12orf43 | CPED1 | A4D0V7 | 435 |
| C12orf43 | UBE2QL1 | A1L167 | 419 |
| C12orf43 | MRAS | O14807 | 417 |
| C12orf43 | LANCL3 | Q6ZV70 | 415 |
| C12orf43 | PPP2R5B | Q15173 | 402 |
| C12orf43 | EID2B | Q96D98 | 400 |
| C12orf43 | GLTP | Q9NZD2 | 378 |
| C12orf43 | OASL | Q15646 | 373 |
| C12orf43 | PCNX3 | Q9H6A9 | 367 |
| C12orf43 | TMEM130 | Q8N3G9 | 360 |
IntAct
54 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SPC25 | NDC80 | psi-mi:“MI:0914”(association) | 0.940 |
| YEATS4 | ZNHIT1 | psi-mi:“MI:0914”(association) | 0.790 |
| RPL28 | MAGEB2 | psi-mi:“MI:0914”(association) | 0.560 |
| PIP4K2A | AP3B1 | psi-mi:“MI:0914”(association) | 0.530 |
| FAM177A1 | SLC27A2 | psi-mi:“MI:0914”(association) | 0.530 |
| N | RBM47 | psi-mi:“MI:0914”(association) | 0.530 |
| MAGEB2 | POLRMT | psi-mi:“MI:0914”(association) | 0.530 |
| ANGPTL4 | NMT2 | psi-mi:“MI:0914”(association) | 0.530 |
| TERF1 | CUSTOS | psi-mi:“MI:0915”(physical association) | 0.510 |
| Xpo1 | IFT56 | psi-mi:“MI:0914”(association) | 0.350 |
| ESR1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| AURKC | USP19 | psi-mi:“MI:0914”(association) | 0.350 |
| CDK17 | DHPS | psi-mi:“MI:0914”(association) | 0.350 |
| SLC30A6 | ACTBL2 | psi-mi:“MI:0914”(association) | 0.350 |
| rep | URB1 | psi-mi:“MI:0914”(association) | 0.350 |
| N | RBM47 | psi-mi:“MI:0914”(association) | 0.350 |
| MAPRE1 | SCAMP1 | psi-mi:“MI:0914”(association) | 0.350 |
| SRP9 | RPS3A | psi-mi:“MI:0914”(association) | 0.350 |
| CTCFL | TARS3 | psi-mi:“MI:0914”(association) | 0.350 |
| ANOS1 | ZNF724 | psi-mi:“MI:0914”(association) | 0.350 |
| AKR7L | KIF2A | psi-mi:“MI:0914”(association) | 0.350 |
| PIP4K2C | AP3B1 | psi-mi:“MI:0914”(association) | 0.350 |
| LINC02910 | MPHOSPH10 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (63): C12orf43 (Affinity Capture-MS), C12orf43 (Affinity Capture-MS), C12orf43 (Affinity Capture-MS), C12orf43 (Affinity Capture-MS), C12orf43 (Affinity Capture-MS), C12orf43 (Affinity Capture-MS), C12orf43 (Affinity Capture-MS), C12orf43 (Affinity Capture-MS), C12orf43 (Affinity Capture-MS), C12orf43 (Affinity Capture-MS), C12orf43 (Affinity Capture-MS), C12orf43 (Affinity Capture-MS), C12orf43 (Affinity Capture-MS), C12orf43 (Affinity Capture-MS), C12orf43 (Affinity Capture-MS)
ESM2 similar proteins: A1YF19, A2T767, B0K035, F1RCE7, F7BHS0, O95997, P0DPK0, P23999, P97613, Q08B36, Q08BD8, Q09HN1, Q0VA20, Q14140, Q2KHM9, Q2QD14, Q2QD15, Q2T9X8, Q2WG80, Q3SZY3, Q3UHI0, Q3V1H1, Q5R7F8, Q5RBY6, Q5RKG1, Q5XG16, Q5ZJU5, Q6A000, Q6AYH4, Q6DF94, Q7SXC6, Q8BHE0, Q8BHZ5, Q8C804, Q8N0Z3, Q8QGU6, Q8R080, Q8WWK9, Q96C57, Q96FF9
Diamond homologs: A9C3N6, P0DPK0, Q3UY34, Q58CQ0, Q5I034, Q96C57
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 77 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| ribosomal small subunit biogenesis | 5 | 17.0× | 4e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
91 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 7 |
| Uncertain significance | 30 |
| Likely benign | 11 |
| Benign | 15 |
Top pathogenic / likely-pathogenic (9)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1315998 | NM_000545.8(HNF1A):c.1781G>T (p.Ser594Ile) | Pathogenic |
| 3673260 | NM_000545.8(HNF1A):c.1819C>T (p.Gln607Ter) | Pathogenic |
| 1687070 | NM_000545.8(HNF1A):c.1772_1773del (p.Ser591fs) | Likely pathogenic |
| 1687084 | NM_000545.8(HNF1A):c.1802del (p.Ser600_Ser601insTer) | Likely pathogenic |
| 1687087 | NM_000545.8(HNF1A):c.1840_1841del (p.Asn614fs) | Likely pathogenic |
| 1700003 | NM_000545.8(HNF1A):c.1786del (p.Val596fs) | Likely pathogenic |
| 3338657 | NM_000545.8(HNF1A):c.1853_1854del (p.Ile618fs) | Likely pathogenic |
| 3370444 | NM_022895.3(C12orf43):c.*3089_*3099del | Likely pathogenic |
| 522535 | NM_000545.8(HNF1A):c.1822_1829del (p.Ser608fs) | Likely pathogenic |
SpliceAI
1295 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 12:121001061:GCA:G | acceptor_loss | 1.0000 |
| 12:121001063:A:AG | acceptor_gain | 1.0000 |
| 12:121001063:A:AT | acceptor_loss | 1.0000 |
| 12:121001064:G:GC | acceptor_loss | 1.0000 |
| 12:121001064:G:GG | acceptor_gain | 1.0000 |
| 12:121001064:GT:G | acceptor_gain | 1.0000 |
| 12:121004488:CACTG:C | acceptor_gain | 1.0000 |
| 12:121004490:CTG:C | acceptor_gain | 1.0000 |
| 12:121004493:C:CC | acceptor_gain | 1.0000 |
| 12:121004999:TCAC:T | donor_loss | 1.0000 |
| 12:121005000:CA:C | donor_loss | 1.0000 |
| 12:121005001:ACCTG:A | donor_loss | 1.0000 |
| 12:121006395:C:CC | acceptor_gain | 1.0000 |
| 12:121016342:T:TA | donor_gain | 1.0000 |
| 12:121016343:C:A | donor_gain | 1.0000 |
| 12:121001063:AGT:A | acceptor_gain | 0.9900 |
| 12:121001064:GTG:G | acceptor_gain | 0.9900 |
| 12:121001064:GTGT:G | acceptor_gain | 0.9900 |
| 12:121001064:GTGTC:G | acceptor_gain | 0.9900 |
| 12:121004491:TG:T | acceptor_gain | 0.9900 |
| 12:121004492:GCT:G | acceptor_loss | 0.9900 |
| 12:121004493:C:CG | acceptor_loss | 0.9900 |
| 12:121004494:T:G | acceptor_loss | 0.9900 |
| 12:121005001:A:AC | donor_gain | 0.9900 |
| 12:121005002:C:CC | donor_gain | 0.9900 |
| 12:121005073:A:AC | acceptor_gain | 0.9900 |
| 12:121005073:A:C | acceptor_gain | 0.9900 |
| 12:121005094:C:CA | acceptor_loss | 0.9900 |
| 12:121005102:CAA:C | acceptor_gain | 0.9900 |
| 12:121005103:A:T | acceptor_gain | 0.9900 |
AlphaMissense
1712 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 12:121010869:G:C | F82L | 0.994 |
| 12:121010869:G:T | F82L | 0.994 |
| 12:121010871:A:G | F82L | 0.994 |
| 12:121010870:A:G | F82S | 0.990 |
| 12:121005089:G:C | F122L | 0.985 |
| 12:121005089:G:T | F122L | 0.985 |
| 12:121005091:A:G | F122L | 0.985 |
| 12:121010870:A:C | F82C | 0.979 |
| 12:121010856:C:G | A87P | 0.978 |
| 12:121005090:A:G | F122S | 0.977 |
| 12:121010867:C:G | R83P | 0.960 |
| 12:121010926:C:A | R63S | 0.958 |
| 12:121010926:C:G | R63S | 0.958 |
| 12:121016390:C:G | A29P | 0.953 |
| 12:121004452:C:G | A164P | 0.948 |
| 12:121010831:T:A | D95V | 0.948 |
| 12:121010858:A:T | V86E | 0.948 |
| 12:121004449:C:G | A165P | 0.943 |
| 12:121010865:C:G | A84P | 0.941 |
| 12:121010855:G:T | A87D | 0.940 |
| 12:121004448:G:T | A165D | 0.939 |
| 12:121010858:A:C | V86G | 0.937 |
| 12:121010846:A:G | L90P | 0.935 |
| 12:121011104:C:G | R63T | 0.935 |
| 12:121010846:A:T | L90Q | 0.932 |
| 12:121005090:A:C | F122C | 0.931 |
| 12:121010830:G:C | D95E | 0.931 |
| 12:121010830:G:T | D95E | 0.931 |
| 12:121010832:C:G | D95H | 0.927 |
| 12:121011109:G:C | S61R | 0.927 |
dbSNP variants (sampled 300 via entrez): RS1000123997 (12:121002255 G>A), RS1000304786 (12:121015921 C>T), RS1000380389 (12:121008959 G>A), RS1000440254 (12:121015616 C>A,T), RS1000878973 (12:121013142 C>A,T), RS1000918249 (12:121010734 G>A,T), RS1001177772 (12:121015107 T>C), RS1001304081 (12:121003943 G>A), RS1001589804 (12:121007682 T>G), RS1001758189 (12:121001576 C>G), RS1001858592 (12:121003731 A>G), RS1001973074 (12:121014116 T>C), RS1002006913 (12:121010113 T>C), RS1002058403 (12:121003417 G>A), RS1002109135 (12:121013751 A>C)
Disease associations
OMIM: gene `` | disease phenotypes: MIM:600496, MIM:125850, MIM:606391, MIM:222100, MIM:125853, MIM:142330, MIM:144700, MIM:612520, MIM:620009, MIM:167000
GenCC curated gene-disease
Mondo (11): maturity-onset diabetes of the young type 3 (MONDO:0010894), monogenic diabetes (MONDO:0015967), maturity-onset diabetes of the young (MONDO:0018911), type 1 diabetes mellitus (MONDO:0005147), type 2 diabetes mellitus (MONDO:0005148), hepatic adenomas, familial (MONDO:0007718), nonpapillary renal cell carcinoma (MONDO:0007763), type 1 diabetes mellitus 20 (MONDO:0012919), keratoderma-ichthyosis-deafness syndrome, autosomal recessive (MONDO:0859278), gestational diabetes (MONDO:0005406), ovarian cancer (MONDO:0008170)
Orphanet (5): Rare genetic diabetes mellitus (Orphanet:183625), MODY (Orphanet:552), Hereditary clear cell renal cell carcinoma (Orphanet:422526), Rare ovarian cancer (Orphanet:213500), NON RARE IN EUROPE: Diabetes mellitus type 1 (Orphanet:243377)
HPO phenotypes
1 total (1 of 1 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0004904 | Maturity-onset diabetes of the young |
GWAS associations
16 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000248_11 | Liver enzyme levels | 2.000000e-10 |
| GCST000338_2 | Coronary heart disease | 5.000000e-07 |
| GCST000925_2 | N-glycan levels | 2.000000e-08 |
| GCST000925_6 | N-glycan levels | 4.000000e-08 |
| GCST001650_6 | C-reactive protein | 3.000000e-10 |
| GCST002424_2 | C-reactive protein levels | 3.000000e-10 |
| GCST002690_21 | Very long-chain saturated fatty acid levels (fatty acid 20:0) | 3.000000e-06 |
| GCST004615_94 | Hemoglobin concentration | 6.000000e-10 |
| GCST005046_13 | N-glycan levels | 4.000000e-10 |
| GCST005046_14 | N-glycan levels | 4.000000e-08 |
| GCST005046_15 | N-glycan levels | 8.000000e-12 |
| GCST005046_16 | N-glycan levels | 3.000000e-11 |
| GCST005046_17 | N-glycan levels | 4.000000e-09 |
| GCST005046_18 | N-glycan levels | 5.000000e-10 |
| GCST008062_55 | Blood urea nitrogen levels | 6.000000e-20 |
| GCST009731_23 | Blood protein levels in cardiovascular risk | 3.000000e-10 |
EFO canonical traits (6, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004532 | serum gamma-glutamyl transferase measurement |
| EFO:0004999 | N-glycan measurement |
| EFO:0004458 | C-reactive protein measurement |
| EFO:0006796 | very long-chain saturated fatty acid measurement |
| EFO:0004509 | hemoglobin measurement |
| EFO:0008137 | galectin-3 measurement |
MeSH disease descriptors (8)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D003922 | Diabetes Mellitus, Type 1 | C18.452.394.750.124; C19.246.267; C20.111.327 |
| D003924 | Diabetes Mellitus, Type 2 | C18.452.394.750.149; C19.246.300 |
| D016640 | Diabetes, Gestational | C12.050.703.170; C18.452.394.750.448; C19.246.200 |
| D010051 | Ovarian Neoplasms | C04.588.322.455; C12.050.351.500.056.630.705; C12.050.351.937.418.685; C12.100.250.056.630.705; C12.900.418.685; C19.344.410; C19.391.630.705 |
| C567286 | Diabetes Mellitus, Insulin-Dependent, 20 (supp.) | |
| C564190 | Hepatic Adenomas, Familial (supp.) | |
| C562772 | Mason-Type Diabetes (supp.) | |
| C563933 | Maturity-Onset Diabetes of the Young, Type 3 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs12819210 | C12orf43, OASL | 3 | 2.25 | 1 | peginterferon alfa-2b;ribavirin |
CTD chemical–gene interactions
23 total (human), top 23 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | affects cotreatment, increases abundance, increases expression | 2 |
| GSK-J4 | decreases expression | 1 |
| FR900359 | affects phosphorylation | 1 |
| uranyl acetate | affects expression | 1 |
| sodium arsenate | decreases expression | 1 |
| beta-lapachone | increases expression | 1 |
| manganese chloride | increases abundance, increases expression, affects cotreatment | 1 |
| ferrous chloride | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| Leflunomide | decreases expression | 1 |
| Air Pollutants | affects expression, increases abundance | 1 |
| Arsenic | affects cotreatment, increases abundance, increases expression | 1 |
| Atrazine | decreases expression | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Doxorubicin | decreases expression | 1 |
| Enzyme Inhibitors | decreases activity, increases O-linked glycosylation | 1 |
| Lead | affects splicing | 1 |
| Manganese | increases abundance, increases expression, affects cotreatment | 1 |
| Ozone | affects expression, increases abundance | 1 |
| Ribonucleotides | affects binding | 1 |
| Tretinoin | decreases expression | 1 |
| Uranium | affects expression | 1 |
| Acrylamide | decreases expression | 1 |
Clinical trials (associated diseases)
299 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04239586 | PHASE4 | UNKNOWN | Switching From Insulin to Sulfonylurea in Diabetes Associated With Variants in MODY Genes |
| NCT00145353 | PHASE4 | UNKNOWN | Insulin NovoRapid Versus Actrapid in Treatment of Type 1 Diabetic Patients During Daily Adjustment of Insulin Dose |
| NCT00145379 | PHASE4 | COMPLETED | The Effect of Metformin in Overweight Patients With Dysregulated Type 1 Diabetes Mellitus |
| NCT00206401 | PHASE4 | COMPLETED | Lantus in the Treatment of Type 1 Diabetes Children |
| NCT00276393 | PHASE4 | COMPLETED | Treatment Trial Evaluating Long Acting Insulin in Type 1 Diabetes |
| NCT00291772 | PHASE4 | COMPLETED | Continuous Subcutaneous Infusion of Pramlintide and Insulin |
| NCT00315952 | PHASE4 | COMPLETED | Study to Estimate the Effects of Inhaled Versus Intravenous (IV) Infusion of Human Insulin in Subjects With Type 1 Diabetes |
| NCT00340613 | PHASE4 | COMPLETED | Lunch Time Insulin Injection by School Nurse for Poorly Controlled Diabetes |
| NCT00346996 | PHASE4 | COMPLETED | Insulin Analogues and Severe Hypoglycaemia |
| NCT00360984 | PHASE4 | COMPLETED | Prevention of Severe Hypoglycemia in Type 1 Diabetes |
| NCT00372086 | PHASE4 | COMPLETED | Rosiglitazone and Insulin in T1DM Adolescents |
| NCT00442767 | PHASE4 | COMPLETED | Post-meal Insulin Dosing With Adjuvant Pre-meal Pramlintide in Children With Type 1 Diabetes Mellitus |
| NCT00453934 | PHASE4 | TERMINATED | Patient Preference of h-Patch vs. Pen or Needle/Syringe as Insulin Administration Device |
| NCT00461331 | PHASE4 | COMPLETED | Comparison of Insulins Aspart and Lispro in Insulin Pumps |
| NCT00472875 | PHASE4 | UNKNOWN | Do Sulphonylureas Preserve Cortical Function During Hypoglycaemia? |
| NCT00497536 | PHASE4 | COMPLETED | Pharmacokinetics of IAsp Following CSII in Patients With T1DM |
| NCT00502138 | PHASE4 | COMPLETED | A Pilot Study of Continuous Subcutaneous Pramlintide Infusion Therapy in Patients With Type 1 Diabetes |
| NCT00505882 | PHASE4 | WITHDRAWN | Efficacy of Pramlintide on Prevention of Weight Gain Early Onset of Type 1 Diabetes |
| NCT00530023 | PHASE4 | COMPLETED | Feasibility Study for Training Pump Naïve Subjects To Use The Paradigm® System And Evaluate Effectiveness |
| NCT00542399 | PHASE4 | COMPLETED | Comparing the Metabolic Control of Once to Twice-daily Insulin Detemir Injections |
| NCT00564395 | PHASE4 | COMPLETED | Detemir: Role in Type 1 Diabetes |
| NCT00814476 | PHASE4 | COMPLETED | The Effects of Regular Home Use Vs Diabetic Team- Supported Use of the Medtronic CareLink Therapy Management System. |
| NCT00898534 | PHASE4 | COMPLETED | Effect of Immediate Hemoglobin A1c on Glycemic Control in Children With Type I Diabetes Mellitus |
| NCT00913497 | PHASE4 | COMPLETED | The Effect of Insulin Glulisine Compared With Insulin Aspart on Breakfast Post Prandial Glucose Levels in Prepubertal Children |
| NCT00978796 | PHASE4 | COMPLETED | Assessing Glucose Effects of Sitagliptin (Januvia) in Adult Patients With Type 1 Diabetes |
| NCT01019486 | PHASE4 | COMPLETED | Regadenoson Blood Flow in Type 1 Diabetes (RABIT1D) |
| NCT01235819 | PHASE4 | COMPLETED | Comparison Between GLP 1 Analogues and DPP 4 Inhibitors in Type 1 Diabetes Mellitus |
| NCT01269034 | PHASE4 | COMPLETED | New Onset Type 1 Diabetes: Role of Exenatide |
| NCT01269047 | PHASE4 | COMPLETED | Use of Exenatide and Pramlintide to Decrease Post-prandial Hyperglycemia |
| NCT01280682 | PHASE4 | COMPLETED | Immune Intervention With Rituximab to Preserve Beta Cell Function in Early Onset Type 1 Diabetes |
| NCT01331343 | PHASE4 | COMPLETED | Effectiveness Study of the Guardian RT in Type 1 Diabetics |
| NCT01351857 | PHASE4 | COMPLETED | Diabetes Care Management Compared to Standard Diabetes Care in Adolescents and Young Adults With Type 1 Diabetes |
| NCT01390480 | PHASE4 | COMPLETED | Effects of Vitamin D Supplementation in Subjects With New Onset of Type 1 Diabetes |
| NCT01400659 | PHASE4 | COMPLETED | Pizza-Salami Study in Children and Adolescents With Type 1 Diabetes |
| NCT01454700 | PHASE4 | COMPLETED | Effect of CSII and CGM on Progression of Late Diabetic Complications |
| NCT01488136 | PHASE4 | COMPLETED | Use of Diazoxide in Acute Hypoglycaemia |
| NCT01497912 | PHASE4 | COMPLETED | Treatment Effects of Atorvastatin on Hemostasis and Skin Microcirculation in Patients With Type 1 Diabetes |
| NCT01526733 | PHASE4 | COMPLETED | Randomized, Double Blind, 2 Way Crossover Study of CSII With, Versus Without, Pretreatment With Human Hyaluronidase |
| NCT01668485 | PHASE4 | COMPLETED | Mechanisms of Glucose Counterregulation in Pancreatic Islet Transplantation |
| NCT01678235 | PHASE4 | COMPLETED | Insulin Glulisine and Aspart in Postprandial Glycemic Control After High-GI Meal in Children With Type 1 Diabetes Mellitus |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): gestational diabetes, hepatic adenomas, familial, keratoderma-ichthyosis-deafness syndrome, autosomal recessive, maturity-onset diabetes of the young, maturity-onset diabetes of the young type 3, monogenic diabetes, nonpapillary renal cell carcinoma, ovarian cancer, type 1 diabetes mellitus 20