C12orf57
gene geneOn this page
Also known as GRCC10C10
Summary
C12orf57 (chromosome 12 open reading frame 57, HGNC:29521) is a protein-coding gene on chromosome 12p13.31, encoding Protein C10 (Q99622). In brain, may be required for corpus callosum development.
This gene is ubiquitously expressed in human tissues. It is required for development of the human corpus callosum. Mutations in this gene are associated with Temtamy syndrome (TEMTYS). Multiple alternatively spliced transcript variants have been found for this gene.
Source: NCBI Gene 113246 — RefSeq curated summary.
At a glance
- Gene–disease (curated): temtamy syndrome (Definitive, GenCC)
- GWAS associations: 1
- Clinical variants (ClinVar): 304 total — 14 pathogenic, 9 likely-pathogenic
- Phenotypes (HPO): 37
- MANE Select transcript:
NM_138425
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:29521 |
| Approved symbol | C12orf57 |
| Name | chromosome 12 open reading frame 57 |
| Location | 12p13.31 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | GRCC10, C10 |
| Ensembl gene | ENSG00000111678 |
| Ensembl biotype | protein_coding |
| OMIM | 615140 |
| Entrez | 113246 |
Gene structure
Transcript identifiers
Ensembl transcripts: 9 — 7 protein_coding, 1 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000229281, ENST00000537087, ENST00000538392, ENST00000540506, ENST00000542222, ENST00000544681, ENST00000545581, ENST00000852280, ENST00000921170
RefSeq mRNA: 5 — MANE Select: NM_138425
NM_001301834, NM_001301836, NM_001301837, NM_001301838, NM_138425
CCDS: CCDS76515, CCDS76516, CCDS8571
Canonical transcript exons
ENST00000229281 — 3 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001045191 | 6944022 | 6944173 |
| ENSE00002227940 | 6945771 | 6946002 |
| ENSE00003477826 | 6944476 | 6944652 |
Expression profiles
Bgee: expression breadth ubiquitous, 145 present calls, max score 99.96.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 130.7357 / max 1476.2805, expressed in 1812 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 123845 | 80.6683 | 1806 |
| 123847 | 27.0244 | 1715 |
| 123846 | 20.9372 | 1742 |
| 123844 | 2.0836 | 696 |
| 123848 | 1.3038 | 806 |
| 123849 | 0.4909 | 220 |
| 123843 | 0.3111 | 73 |
Top tissues by expression
145 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| thymus | UBERON:0002370 | 99.96 | gold quality |
| left ovary | UBERON:0002119 | 99.47 | gold quality |
| endocervix | UBERON:0000458 | 99.40 | gold quality |
| ganglionic eminence | UBERON:0004023 | 99.40 | gold quality |
| embryo | UBERON:0000922 | 99.39 | gold quality |
| right ovary | UBERON:0002118 | 99.39 | gold quality |
| pituitary gland | UBERON:0000007 | 99.35 | gold quality |
| ovary | UBERON:0000992 | 99.35 | gold quality |
| adenohypophysis | UBERON:0002196 | 99.30 | gold quality |
| cortical plate | UBERON:0005343 | 99.28 | gold quality |
| body of uterus | UBERON:0009853 | 99.26 | gold quality |
| mucosa of stomach | UBERON:0001199 | 99.22 | gold quality |
| ascending aorta | UBERON:0001496 | 99.20 | gold quality |
| thoracic aorta | UBERON:0001515 | 99.19 | gold quality |
| left uterine tube | UBERON:0001303 | 99.17 | gold quality |
| left coronary artery | UBERON:0001626 | 99.14 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 99.13 | gold quality |
| popliteal artery | UBERON:0002250 | 99.12 | gold quality |
| tibial artery | UBERON:0007610 | 99.12 | gold quality |
| skin of leg | UBERON:0001511 | 99.09 | gold quality |
| right coronary artery | UBERON:0001625 | 99.05 | gold quality |
| prostate gland | UBERON:0002367 | 99.05 | gold quality |
| zone of skin | UBERON:0000014 | 98.98 | gold quality |
| primary visual cortex | UBERON:0002436 | 98.97 | gold quality |
| fallopian tube | UBERON:0003889 | 98.97 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 98.97 | gold quality |
| skin of abdomen | UBERON:0001416 | 98.95 | gold quality |
| hypothalamus | UBERON:0001898 | 98.94 | gold quality |
| myometrium | UBERON:0001296 | 98.92 | gold quality |
| right atrium auricular region | UBERON:0006631 | 98.90 | gold quality |
Single-cell (SCXA)
Detected in 10 experiment(s), a significant marker in 8.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-122 | yes | 80.28 |
| E-HCAD-10 | yes | 51.83 |
| E-CURD-112 | yes | 39.25 |
| E-CURD-88 | yes | 33.39 |
| E-GEOD-125970 | yes | 27.16 |
| E-HCAD-13 | yes | 24.41 |
| E-MTAB-10042 | yes | 7.76 |
| E-CURD-77 | no | 861.83 |
| E-HCAD-30 | no | 137.22 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Literature-anchored findings (GeneRIF, showing 2)
- The findings strongly support the candidacy of C12orf57 as a gene that is mutated in a distinct syndromic form of colobomatous microphthalmia in humans. (PMID:23453665)
- Exome sequencing identifies compound heterozygous mutations in C12orf57 in two siblings with severe intellectual disability, hypoplasia of the corpus callosum, chorioretinal coloboma, and intractable seizures. (PMID:24798461)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | C20H12orf57 | ENSDARG00000030038 |
| mus_musculus | Grcc10 | ENSMUSG00000072772 |
| drosophila_melanogaster | CG15387 | FBGN0031403 |
Protein
Protein identifiers
Protein C10 — Q99622 (reviewed: Q99622)
All UniProt accessions (4): Q99622, F5GXW5, U3KQ07, U3KQ85
UniProt curated annotations — full annotation on UniProt →
Function. In brain, may be required for corpus callosum development.
Subcellular location. Cytoplasm.
Tissue specificity. Ubiquitously expressed, with higher expression in lung and fetal brain.
Disease relevance. Temtamy syndrome (TEMTYS) [MIM:218340] An autosomal recessive syndrome characterized by intellectual disability, variable craniofacial dysmorphism, ocular coloboma, seizures, and brain abnormalities, including abnormalities of the corpus callosum and thalamus. The disease is caused by variants affecting the gene represented in this entry. A variant resulting in a GUG start codon may be able to produce some protein because of a consensus Kozak sequence, although less efficiently than the wild type. This would explain the phenotypic variability observed.
Similarity. Belongs to the UPF0456 family.
RefSeq proteins (5): NP_001288763, NP_001288765, NP_001288766, NP_001288767, NP_612434* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR026317 | Grcc10 | Domain |
Pfam: PF14974
UniProt features (4 total): initiator methionine 1, chain 1, modified residue 1, sequence variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q99622-F1 | 81.41 | 0.47 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 2
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 310 (showing top):
AHRARNT_01, HORIUCHI_WTAP_TARGETS_DN, GOBP_COGNITION, GOBP_BEHAVIOR, GOBP_NEUROGENESIS, GOBP_MULTICELLULAR_ORGANISMAL_MOVEMENT, GOBP_VENTRICULAR_SYSTEM_DEVELOPMENT, GOBP_SKELETAL_MUSCLE_CONTRACTION, EFC_Q6, GOBP_FOREBRAIN_DEVELOPMENT, GOBP_REGULATION_OF_STRIATED_MUSCLE_CONTRACTION, GOBP_ANIMAL_ORGAN_MORPHOGENESIS, GOBP_REGULATION_OF_MUSCLE_CONTRACTION, GOBP_MUSCLE_CONTRACTION, KORKOLA_EMBRYONAL_CARCINOMA_UP
GO Biological Process (7): post-embryonic development (GO:0009791), regulation of skeletal muscle contraction (GO:0014819), corpus callosum morphogenesis (GO:0021540), third ventricle development (GO:0021678), psychomotor behavior (GO:0036343), camera-type eye morphogenesis (GO:0048593), cognition (GO:0050890)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (2): cytoplasm (GO:0005737), nuclear speck (GO:0016607)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| multicellular organism development | 1 |
| multicellular organismal process | 1 |
| skeletal muscle contraction | 1 |
| regulation of striated muscle contraction | 1 |
| central nervous system projection neuron axonogenesis | 1 |
| corpus callosum development | 1 |
| ventricular system development | 1 |
| anatomical structure development | 1 |
| motor behavior | 1 |
| camera-type eye development | 1 |
| eye morphogenesis | 1 |
| nervous system process | 1 |
| binding | 1 |
| intracellular anatomical structure | 1 |
| cellular anatomical structure | 1 |
| nuclear ribonucleoprotein granule | 1 |
Protein interactions and networks
STRING
744 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| C12orf57 | HLA-B | P01889 | 809 |
| C12orf57 | PLAC8 | Q9NZF1 | 769 |
| C12orf57 | HLA-A | P01891 | 764 |
| C12orf57 | POLR3H | Q9Y535 | 665 |
| C12orf57 | B2M | P01884 | 651 |
| C12orf57 | APLP1 | P51693 | 628 |
| C12orf57 | TAPBP | O15533 | 595 |
| C12orf57 | HLA-G | P17693 | 594 |
| C12orf57 | HLA-C | P04222 | 579 |
| C12orf57 | TBL1XR1 | Q9BZK7 | 478 |
| C12orf57 | CNOT11 | Q9UKZ1 | 473 |
| C12orf57 | KIR3DL2 | P43630 | 447 |
| C12orf57 | ERAP1 | Q9NZ08 | 440 |
| C12orf57 | AGRN | O00468 | 431 |
| C12orf57 | PNMA2 | Q9UL42 | 426 |
IntAct
48 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| AKR7A3 | AKR7A2 | psi-mi:“MI:0914”(association) | 0.890 |
| VPS29 | VPS26C | psi-mi:“MI:0914”(association) | 0.760 |
| PPP1CC | CCDC85C | psi-mi:“MI:0914”(association) | 0.740 |
| TAX1BP3 | ARVCF | psi-mi:“MI:0914”(association) | 0.690 |
| TANC2 | TAX1BP3 | psi-mi:“MI:0914”(association) | 0.690 |
| PPP1CA | CCDC85C | psi-mi:“MI:0914”(association) | 0.670 |
| CNOT7 | CAPZA2 | psi-mi:“MI:0914”(association) | 0.640 |
| INSL3 | C12orf57 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ANKK1 | C12orf57 | psi-mi:“MI:0915”(physical association) | 0.560 |
| YWHAB | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.480 |
| EGLN3 | FAM168B | psi-mi:“MI:0914”(association) | 0.350 |
| ESR1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| ARHGAP39 | HMGN4 | psi-mi:“MI:0914”(association) | 0.350 |
| SYNGAP1 | POTEF | psi-mi:“MI:0914”(association) | 0.350 |
| SYNGAP1 | POM121C | psi-mi:“MI:0914”(association) | 0.350 |
| HCN1 | POTEF | psi-mi:“MI:0914”(association) | 0.350 |
| SYNGAP1 | IGLON5 | psi-mi:“MI:0914”(association) | 0.350 |
| AGAP3 | AHCYL1 | psi-mi:“MI:0914”(association) | 0.350 |
| C12orf57 | TANC1 | psi-mi:“MI:0914”(association) | 0.350 |
| CAPZB | ENAH | psi-mi:“MI:0914”(association) | 0.350 |
| VPS35 | KIF2A | psi-mi:“MI:0914”(association) | 0.350 |
| YWHAB | BRAF | psi-mi:“MI:0914”(association) | 0.350 |
| RPL35A | SMCHD1 | psi-mi:“MI:0914”(association) | 0.350 |
| CIMAP1A | HSPA8 | psi-mi:“MI:0914”(association) | 0.350 |
| TMEM154 | RPSA2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (51): C12orf57 (Affinity Capture-MS), C12orf57 (Co-fractionation), C12orf57 (Affinity Capture-MS), C12orf57 (Affinity Capture-RNA), C12orf57 (Affinity Capture-MS), C12orf57 (Affinity Capture-MS), C12orf57 (Affinity Capture-MS), ANKK1 (Two-hybrid), INSL3 (Two-hybrid), C12orf57 (Affinity Capture-MS), C12orf57 (Affinity Capture-MS), C12orf57 (Affinity Capture-RNA), C12orf57 (Affinity Capture-MS), C12orf57 (Affinity Capture-MS), C12orf57 (Affinity Capture-MS)
ESM2 similar proteins: A0A8W7Q4I4, A0RHW7, A9VUB0, B4QAF0, B7GGM5, B7H6T6, B7HMD4, B7IVI6, B7JK37, B9IW28, C1EPW3, C3LI15, C3P6V6, D4B5D3, F7IW82, O05544, O29607, O35127, P07096, P07580, P0CK49, P0CK50, P0CK62, P19400, P30659, P43215, P68830, P68831, P74102, P80734, Q2J1G7, Q32KM2, Q3V4Q3, Q4P9Y9, Q52329, Q57I62, Q635X7, Q6AX50, Q6HEL5, Q6P7L0
Diamond homologs: O35127, Q32KM2, Q6AX50, Q6P7L0, Q6TH01, Q99622
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
304 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 14 |
| Likely pathogenic | 9 |
| Uncertain significance | 119 |
| Likely benign | 117 |
| Benign | 18 |
Top pathogenic / likely-pathogenic (23)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1244254 | NM_138425.4(C12orf57):c.53_54del | Pathogenic |
| 1933844 | NM_138425.4(C12orf57):c.41dup (p.Gln15fs) | Pathogenic |
| 1964294 | NM_138425.4(C12orf57):c.19C>T (p.Gln7Ter) | Pathogenic |
| 2023867 | NM_138425.4(C12orf57):c.143del (p.Gly48fs) | Pathogenic |
| 2161002 | NM_138425.4(C12orf57):c.154C>T (p.Gln52Ter) | Pathogenic |
| 242885 | NM_138425.4(C12orf57):c.53-2A>G | Pathogenic |
| 2442369 | NM_138425.4(C12orf57):c.55dup (p.Val19fs) | Pathogenic |
| 2627440 | NM_138425.4(C12orf57):c.3G>A (p.Met1Ile) | Pathogenic |
| 2859820 | NM_138425.4(C12orf57):c.4del (p.Ala2fs) | Pathogenic |
| 41943 | NM_138425.4(C12orf57):c.152T>A (p.Leu51Gln) | Pathogenic |
| 4808688 | NM_138425.4(C12orf57):c.145A>T (p.Lys49Ter) | Pathogenic |
| 583666 | NC_000012.11:g.(?7053265)(7055105_?)del | Pathogenic |
| 662818 | NM_138425.4(C12orf57):c.161_162del (p.Val54fs) | Pathogenic |
| 802816 | NM_138425.4(C12orf57):c.182del (p.Ile61fs) | Pathogenic |
| 1202612 | NR_023317.1(RNU7-1):n.40_47del | Likely pathogenic |
| 1202615 | NR_023317.1(RNU7-1):n.35G>A | Likely pathogenic |
| 1328141 | NR_023317.1(RNU7-1):n.28C>G | Likely pathogenic |
| 1328524 | NR_023317.1(RNU7-1):n.30A>G | Likely pathogenic |
| 1993030 | NM_138425.4(C12orf57):c.52+1G>C | Likely pathogenic |
| 3775418 | NM_138425.4(C12orf57):c.286_287del (p.Ala96fs) | Likely pathogenic |
| 534668 | NM_138425.4(C12orf57):c.53-1G>A | Likely pathogenic |
| 661984 | NM_138425.4(C12orf57):c.52+1G>T | Likely pathogenic |
| 806819 | NM_138425.4(C12orf57):c.174del (p.Thr59fs) | Likely pathogenic |
SpliceAI
306 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 12:6944172:GG:G | donor_gain | 1.0000 |
| 12:6944173:GG:G | donor_gain | 1.0000 |
| 12:6944401:C:CA | acceptor_gain | 1.0000 |
| 12:6944411:T:A | acceptor_gain | 1.0000 |
| 12:6944412:G:A | acceptor_gain | 1.0000 |
| 12:6945768:CAGGT:C | acceptor_loss | 1.0000 |
| 12:6944408:C:A | acceptor_gain | 0.9900 |
| 12:6944420:T:A | acceptor_gain | 0.9900 |
| 12:6944434:C:CA | acceptor_gain | 0.9900 |
| 12:6945769:A:AG | acceptor_gain | 0.9900 |
| 12:6945770:G:GG | acceptor_gain | 0.9900 |
| 12:6945770:GGT:G | acceptor_gain | 0.9900 |
| 12:6944170:AAGGG:A | donor_loss | 0.9800 |
| 12:6944171:AGGG:A | donor_loss | 0.9800 |
| 12:6944173:GGTGA:G | donor_loss | 0.9800 |
| 12:6944174:GTG:G | donor_loss | 0.9800 |
| 12:6944175:T:G | donor_loss | 0.9800 |
| 12:6944176:GAGAA:G | donor_loss | 0.9800 |
| 12:6944431:C:A | acceptor_gain | 0.9800 |
| 12:6944439:ACCC:A | acceptor_gain | 0.9800 |
| 12:6944439:ACCCG:A | acceptor_gain | 0.9800 |
| 12:6945769:AG:A | acceptor_gain | 0.9800 |
| 12:6945770:GG:G | acceptor_gain | 0.9800 |
| 12:6944177:AG:A | donor_loss | 0.9700 |
| 12:6944399:T:TA | acceptor_gain | 0.9700 |
| 12:6944417:C:A | acceptor_gain | 0.9700 |
| 12:6944439:A:AG | acceptor_gain | 0.9700 |
| 12:6944440:C:G | acceptor_gain | 0.9700 |
| 12:6944442:C:CA | acceptor_gain | 0.9700 |
| 12:6944443:G:A | acceptor_gain | 0.9700 |
AlphaMissense
816 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 12:6944551:C:A | A43D | 1.000 |
| 12:6944575:T:C | L51P | 1.000 |
| 12:6944596:C:A | A58D | 1.000 |
| 12:6944611:A:C | Q63P | 1.000 |
| 12:6944620:T:A | I66N | 1.000 |
| 12:6944634:T:C | F71L | 1.000 |
| 12:6944635:T:C | F71S | 1.000 |
| 12:6944636:C:A | F71L | 1.000 |
| 12:6944636:C:G | F71L | 1.000 |
| 12:6944652:G:C | G77R | 1.000 |
| 12:6945777:T:A | L79H | 1.000 |
| 12:6945782:T:C | F81L | 1.000 |
| 12:6945783:T:C | F81S | 1.000 |
| 12:6945784:T:A | F81L | 1.000 |
| 12:6945784:T:G | F81L | 1.000 |
| 12:6945795:T:A | V85D | 1.000 |
| 12:6944482:T:A | L20H | 0.999 |
| 12:6944482:T:C | L20P | 0.999 |
| 12:6944538:G:C | A39P | 0.999 |
| 12:6944539:C:A | A39D | 0.999 |
| 12:6944560:A:T | D46V | 0.999 |
| 12:6944565:G:C | G48R | 0.999 |
| 12:6944566:G:A | G48D | 0.999 |
| 12:6944575:T:A | L51Q | 0.999 |
| 12:6944587:T:A | L55Q | 0.999 |
| 12:6944587:T:C | L55P | 0.999 |
| 12:6944589:C:T | P56S | 0.999 |
| 12:6944590:C:A | P56H | 0.999 |
| 12:6944595:G:C | A58P | 0.999 |
| 12:6944602:A:C | Q60P | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000062722 (12:6942517 C>A,T), RS1001643880 (12:6943087 C>T), RS1001989739 (12:6942775 C>T), RS1002761008 (12:6945587 G>A,C), RS1003056522 (12:6943826 G>A,C,T), RS1004494517 (12:6946368 C>G,T), RS1006252093 (12:6943973 G>A,C,T), RS1007720531 (12:6944015 G>A,C,T), RS1008339302 (12:6945052 T>C,G), RS1008666597 (12:6943648 A>G,T), RS1008724844 (12:6944264 T>A,C), RS1009250398 (12:6942270 A>G), RS1010048747 (12:6942740 G>T), RS1010684626 (12:6944496 C>G,T), RS1010719965 (12:6943899 T>A,C,G)
Disease associations
OMIM: gene MIM:615140 | disease phenotypes: MIM:218340, MIM:619487, MIM:300345
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| temtamy syndrome | Definitive | Autosomal recessive |
Mondo (7): temtamy syndrome (MONDO:0009033), Aicardi-Goutieres syndrome 9 (MONDO:0030362), intellectual disability (MONDO:0001071), hydronephrosis (MONDO:0005510), vesicoureteral reflux (MONDO:0006007), attention deficit-hyperactivity disorder (MONDO:0007743), microphthalmia, isolated, with coloboma (MONDO:0000170)
Orphanet (3): Temtamy syndrome (Orphanet:1777), Colobomatous microphthalmia (Orphanet:98938), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
37 total (30 of 37 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000276 | Long face |
| HP:0000316 | Hypertelorism |
| HP:0000343 | Long philtrum |
| HP:0000347 | Micrognathia |
| HP:0000369 | Low-set ears |
| HP:0000394 | Lop ear |
| HP:0000444 | Convex nasal ridge |
| HP:0000494 | Downslanted palpebral fissures |
| HP:0000545 | Myopia |
| HP:0000567 | Chorioretinal coloboma |
| HP:0000568 | Microphthalmia |
| HP:0000612 | Iris coloboma |
| HP:0000678 | Dental crowding |
| HP:0000685 | Hypoplasia of teeth |
| HP:0000742 | Self-mutilation |
| HP:0001083 | Ectopia lentis |
| HP:0001156 | Brachydactyly |
| HP:0001250 | Seizure |
| HP:0001252 | Hypotonia |
| HP:0001256 | Mild intellectual disability |
| HP:0001263 | Global developmental delay |
| HP:0001274 | Agenesis of corpus callosum |
| HP:0001276 | Hypertonia |
| HP:0001659 | Aortic regurgitation |
| HP:0001762 | Talipes equinovarus |
| HP:0001763 | Pes planus |
| HP:0001885 | Short 2nd toe |
| HP:0002007 | Frontal bossing |
| HP:0002119 | Ventriculomegaly |
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST010002_206 | Refractive error | 3.000000e-62 |
MeSH disease descriptors (5)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D006869 | Hydronephrosis | C12.050.351.968.419.307; C12.200.777.419.307; C12.950.419.307 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D014718 | Vesico-Ureteral Reflux | C12.050.351.968.829.920; C12.200.777.829.920; C12.950.829.920 |
| C537463 | Microphthalmia associated with colobomatous cyst (supp.) | |
| C536959 | Temtamy syndrome (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
41 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | decreases expression, affects expression, affects cotreatment | 7 |
| Cyclosporine | increases expression | 4 |
| sodium arsenite | increases expression | 2 |
| Benzo(a)pyrene | increases methylation, increases expression | 2 |
| 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide | affects expression, increases expression | 2 |
| Cadmium Chloride | increases abundance, increases expression | 2 |
| aristolochic acid I | decreases expression, increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| trichostatin A | affects cotreatment, decreases expression | 1 |
| arsenite | increases reaction, affects binding | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| chloropicrin | affects expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| ICG 001 | increases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| nabiximols | increases expression | 1 |
| Ethanol | affects cotreatment, increases abundance, increases expression | 1 |
| Cadmium | increases expression, increases abundance | 1 |
| Cisplatin | increases expression | 1 |
| Diuron | decreases expression | 1 |
| Doxorubicin | increases expression | 1 |
| Estradiol | decreases expression | 1 |
| Formaldehyde | increases expression | 1 |
| Gasoline | affects cotreatment, increases abundance, increases expression | 1 |
| Ivermectin | decreases expression | 1 |
| Methapyrilene | increases methylation | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
Cellosaurus cell lines
2 cell lines: 1 transformed cell line, 1 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B2T7 | Abcam HEK293T C12orf57 KO | Transformed cell line | Female |
| CVCL_VE76 | PFIZi028-A | Induced pluripotent stem cell | Female |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT00152750 | PHASE4 | UNKNOWN | Study of Clonidine on Sleep Architecture in Children With Tourette’s Syndrome (TS) and Comorbid ADHD |
| NCT00181571 | PHASE4 | COMPLETED | A Double-Blind Comparison of Concerta and Placebo in Adults With Attention Deficit Hyperactivity Disorder |
| NCT00181675 | PHASE4 | COMPLETED | A Double-Blind Comparison of Galantamine HBr and Placebo in Adults With Attention Deficit Hyperactivity Disorder |
| NCT00181714 | PHASE4 | COMPLETED | Prevention of Cigarette Smoking in Attention Deficit Hyperactivity Disorder (ADHD) Youth With Concerta |
| NCT00181948 | PHASE4 | COMPLETED | Strattera Treatment in Children With ADHD Who Have Poor Response to Stimulant Therapy |
| NCT00181987 | PHASE4 | COMPLETED | Concerta in the Treatment of ADHD in Youth and Adults With Bipolar Disorder |
| NCT00190736 | PHASE4 | COMPLETED | Efficacy and Safety of Once-Daily Atomoxetine Hydrochloride in Adults With ADHD Over an Extended Period of Time (6 Months) |
| NCT00190775 | PHASE4 | COMPLETED | A Randomized, Double-Blind Comparison of Placebo and Atomoxetine Hydrochloride Given Once a Day in Adults With Attention-Deficit/Hyperactivity Disorder (ADHD) |
| NCT00190879 | PHASE4 | COMPLETED | Placebo-Controlled Study of Atomoxetine Hydrochloride in the Treatment of Adults With ADHD and Comorbid Social Anxiety Disorder |
| NCT00190957 | PHASE4 | COMPLETED | Atomoxetine Treatment of Adults With ADHD and Comorbid Alcohol Abuse |
| NCT00191035 | PHASE4 | COMPLETED | Maintenance of Benefit With Atomoxetine Hydrochloride in Adolescents With ADHD |
| NCT00191048 | PHASE4 | COMPLETED | Treatment With Atomoxetine Hydrochloride in Children and Adolescents With ADHD |
| NCT00191633 | PHASE4 | COMPLETED | Study of Atomoxetine in Children With ADHD to Assess Symptomatic and Functional Outcomes |
| NCT00191906 | PHASE4 | COMPLETED | Comparison of Atomoxetine and Placebo in Children With Attention-Deficit/Hyperactivity Disorder (ADHD) and/or Reading Disorder (RD) |
| NCT00216918 | PHASE4 | COMPLETED | Neuropsychological Functioning in Children With Attention-Deficit/Hyperactivity Disorder. |
| NCT00221962 | PHASE4 | COMPLETED | Study of Aripiprazole (Abilify) in Children With ADHD (Attention Deficit Hyperactivity Disorder) |
| NCT00223561 | PHASE4 | COMPLETED | Methylphenidate and Driving Ability in Adult Patients With Attention-Deficit Hyperactivity Disorder |
| NCT00299234 | PHASE4 | TERMINATED | Atomoxetine for Children With Acquired Attentional Disorders Following Completion of Chemotherapy for ALL |
| NCT00302406 | PHASE4 | COMPLETED | Naturalistic Substitution of Concerta in Adult Subject With ADHD Receiving Immediate Release Methylphenidate |
| NCT00305370 | PHASE4 | COMPLETED | Aripiprazole Associated With Methylphenidate in Children and Adolescents With Bipolar Disorder and ADHD |
| NCT00381758 | PHASE4 | COMPLETED | The COMACS Study: A Comparison of Methylphenidates in an Analog Classroom Setting |
| NCT00406354 | PHASE4 | COMPLETED | Comparison of Atomoxetine Versus Placebo in Children and Adolescents With ADHD and Comorbid ODD in Germany |
| NCT00434213 | PHASE4 | COMPLETED | Characterization of Dermal Reactions in Pediatric Patients With ADHD Using DAYTRANA |
| NCT00468143 | PHASE4 | COMPLETED | A Within-Subject Cross-Over Comparison Between Immediate Release and Extended Release Adderall |
| NCT00471354 | PHASE4 | COMPLETED | A Study for Patients With Attention-Deficit/Hyperactivity Disorder Treated With Atomoxetine |
| NCT00483106 | PHASE4 | COMPLETED | Clinical and Pharmacogenetic Study of Attention Deficit With Hyperactivity Disorder (ADHD) |
| NCT00485849 | PHASE4 | COMPLETED | A Study of Atomoxetine for Attention Deficit and Hyperactive/Impulsive Behaviour Problems in Children With ASD |
| NCT00485875 | PHASE4 | COMPLETED | Safety and Efficacy of Switching From a Stimulant Medication to Atomoxetine in Children and Adolescents With ADHD |
| NCT00486122 | PHASE4 | COMPLETED | Evaluation of Continuous Symptom Treatment of ADHD |
| NCT00500071 | PHASE4 | COMPLETED | Dose-Optimization Study Evaluating the Efficacy, Safety and Tolerability of Vyvanse (Lisdexamfetamine Dimesylate) in Children Aged 6-12 Diagnosed With ADHD |
| NCT00506727 | PHASE4 | COMPLETED | Analog Classroom Study Comparison of ADDERALL XR With STRATTERA in Children Aged 6-12 With ADHD |
| NCT00510276 | PHASE4 | COMPLETED | Treatment of Attention-Deficit/Hyperactivity Disorder (ADHD) With Atomoxetine in Young Adults and Its Effects on Functional Outcomes |
| NCT00517504 | PHASE4 | COMPLETED | Methylphenidate Study in Young Children With Developmental Disorders |
| NCT00517647 | PHASE4 | COMPLETED | Atomoxetine Pilot Study in Preschool Children With ADHD |
| NCT00518232 | PHASE4 | COMPLETED | A Study to Determine Effective and Tolerable Titration Scheme for OROS-Methylphenidate in Children With Attention-deficit Hyperactivity Disorder |
| NCT00530257 | PHASE4 | COMPLETED | Study of the Effects of Osmotic-Release Oral System (OROS) Methylphenidate (Concerta) on Attention and Memory |
Related Atlas pages
- Associated diseases: temtamy syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Aicardi-Goutieres syndrome 9, hydronephrosis, microphthalmia, isolated, with coloboma, temtamy syndrome, vesicoureteral reflux